##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138999_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6723432 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.41303622911632 32.0 28.0 33.0 18.0 34.0 2 31.560788894719245 33.0 31.0 33.0 27.0 34.0 3 32.350032096702996 33.0 33.0 34.0 30.0 34.0 4 32.622821053295404 33.0 33.0 34.0 31.0 34.0 5 32.960988227440986 33.0 33.0 34.0 32.0 34.0 6 36.54596952865739 38.0 37.0 38.0 34.0 38.0 7 36.663271823080834 38.0 37.0 38.0 34.0 38.0 8 36.71481365469302 38.0 38.0 38.0 34.0 38.0 9 36.93923163051251 38.0 38.0 38.0 35.0 38.0 10-11 37.06662341494641 38.0 38.0 38.0 36.0 38.0 12-13 37.12549818307079 38.0 38.0 38.0 36.0 38.0 14-15 37.125624234765816 38.0 38.0 38.0 36.0 38.0 16-17 37.084844391971245 38.0 38.0 38.0 36.0 38.0 18-19 37.127772467989566 38.0 38.0 38.0 36.0 38.0 20-21 37.09825439418441 38.0 38.0 38.0 36.0 38.0 22-23 37.13953814225583 38.0 38.0 38.0 36.0 38.0 24-25 37.14560414500563 38.0 38.0 38.0 36.0 38.0 26-27 37.07838313144323 38.0 38.0 38.0 36.0 38.0 28-29 37.06750365728297 38.0 38.0 38.0 36.0 38.0 30-31 36.93810575516337 38.0 38.0 38.0 36.0 38.0 32-33 37.02988110358705 38.0 38.0 38.0 36.0 38.0 34-35 37.04263198469078 38.0 38.0 38.0 36.0 38.0 36-37 36.96769718196113 38.0 38.0 38.0 36.0 38.0 38-39 36.98562091532918 38.0 38.0 38.0 36.0 38.0 40-41 36.92615015528172 38.0 38.0 38.0 35.5 38.0 42-43 36.91093608180462 38.0 38.0 38.0 35.5 38.0 44-45 36.90989207283164 38.0 38.0 38.0 36.0 38.0 46-47 36.86829257375117 38.0 38.0 38.0 35.0 38.0 48-49 36.83472384972754 38.0 38.0 38.0 35.0 38.0 50-51 36.853674020557754 38.0 38.0 38.0 35.0 38.0 52-53 36.763120167588724 38.0 38.0 38.0 35.0 38.0 54-55 36.747338539761756 38.0 38.0 38.0 35.0 38.0 56-57 36.74953359959636 38.0 38.0 38.0 35.0 38.0 58-59 36.76887185278177 38.0 38.0 38.0 35.0 38.0 60-61 36.76065597175624 38.0 38.0 38.0 35.0 38.0 62-63 36.76405173905111 38.0 38.0 38.0 35.0 38.0 64-65 36.722230614788 38.0 38.0 38.0 35.0 38.0 66-67 36.722958459622646 38.0 38.0 38.0 35.0 38.0 68-69 36.73344092905089 38.0 38.0 38.0 35.0 38.0 70-71 36.64672806589644 38.0 38.0 38.0 34.0 38.0 72-73 36.60147890144763 38.0 38.0 38.0 34.0 38.0 74-75 36.65306755737201 38.0 38.0 38.0 34.0 38.0 76-77 36.63068319572424 38.0 38.0 38.0 34.0 38.0 78-79 36.64930657144697 38.0 38.0 38.0 34.0 38.0 80-81 36.671709906103644 38.0 38.0 38.0 34.0 38.0 82-83 36.546151770861655 38.0 38.0 38.0 34.0 38.0 84-85 36.56471337651436 38.0 38.0 38.0 34.0 38.0 86-87 36.560962569802406 38.0 38.0 38.0 34.0 38.0 88-89 36.5108185292521 38.0 38.0 38.0 34.0 38.0 90-91 36.51016234455095 38.0 38.0 38.0 34.0 38.0 92-93 36.55837947524048 38.0 38.0 38.0 34.0 38.0 94-95 36.45949544914559 38.0 38.0 38.0 34.0 38.0 96-97 36.41913640877736 38.0 38.0 38.0 34.0 38.0 98-99 36.48880425754352 38.0 38.0 38.0 34.0 38.0 100 34.85984317370247 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 22.0 20 53.0 21 177.0 22 658.0 23 2193.0 24 5271.0 25 10375.0 26 17990.0 27 28778.0 28 42479.0 29 59506.0 30 79944.0 31 103594.0 32 134050.0 33 178580.0 34 255569.0 35 427987.0 36 1071911.0 37 4304292.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.272730355568406 20.181285391151423 15.369353032796345 26.176631220483827 2 12.711186786748197 21.088218041024287 44.438807442389546 21.761787729837977 3 15.941441811265436 28.117857070615127 31.801526363321592 24.13917475479785 4 11.109832002465406 20.195563813242998 40.72789016085832 27.96671402343327 5 12.50131634450684 37.9315750738789 37.08054719474343 12.486561386870825 6 27.12609083070831 40.28394133887892 20.234802736876457 12.355165093536321 7 24.226972177304688 33.58165889087597 25.342711876910485 16.848657054908863 8 22.706870538736766 37.82532492334273 22.742878934448953 16.72492560347156 9 24.55368397474444 17.343168986191724 22.658996574814257 35.44415046424958 10-11 22.47193843858315 27.83926423290962 30.595066626687085 19.093730701820142 12-13 23.556845670484954 25.309031161466343 30.489555036772884 20.64456813127581 14-15 20.96096160413313 26.708606556889396 27.95443606777015 24.37599577120732 16-17 20.55628732468775 29.84764328694036 28.622227457643657 20.973841930728234 18-19 20.517348877775518 29.039016085832355 30.22773934502498 20.215895691367148 20-21 21.312438897675015 28.182768330028185 29.952792899614227 20.551999872682575 22-23 20.95183592846524 28.31902831478924 29.78461037323939 20.944525383506132 24-25 20.874059712801767 28.395152445858603 29.935831920358336 20.79495592098129 26-27 20.8144392843789 28.53948558401885 29.88131419498354 20.764760936618714 28-29 20.575839316517307 28.441905764024778 30.114219044680844 20.868035874777068 30-31 20.980324935032492 28.213031490911394 29.80448044677934 21.002163127276766 32-33 21.017131495359166 28.25855479422862 30.00068254157021 20.723631168842008 34-35 21.02489512911004 28.594950226906203 29.81671381907654 20.563440824907218 36-37 20.849101506780485 28.450506218490613 29.766120003408027 20.93427227132087 38-39 20.725347059125138 28.451450008719505 30.000195935457807 20.82300699669755 40-41 20.971664911724353 28.32588453351462 29.89570675204161 20.806743802719406 42-43 21.033774415565095 28.302172177639594 29.777702579685688 20.886350827109617 44-45 20.87723502064296 28.595952340967184 29.653427936528182 20.873384701861674 46-47 21.117039504166804 28.330181141789517 29.307327344781875 21.245452009261808 48-49 21.084102407751317 28.343252364225492 29.39213201224747 21.180513215775722 50-51 20.93251408832729 28.47218057974693 29.439022013103394 21.156283318822382 52-53 21.063609338068876 28.581353412012767 29.47692785549931 20.87810939441905 54-55 21.038752371386774 28.515693948466847 29.341092379815937 21.10446130033045 56-57 21.274301603497587 28.649032465314033 28.978516760594413 21.098149170593967 58-59 20.902684783190235 28.931710323208343 29.415870914815745 20.749733978785674 60-61 21.170975632752516 29.219119847471582 28.95057423898916 20.659330280786744 62-63 20.9499575503147 29.38301130912934 28.931373637769802 20.73565750278615 64-65 20.92123475132463 29.24039027360528 28.940309778400913 20.898065196669176 66-67 21.04250092676707 29.21525030858288 28.82111969756841 20.92112906708164 68-69 21.043681938667937 29.08291159456411 28.944784906037448 20.928621560730505 70-71 21.115582221886072 28.688326370408994 29.04617556653789 21.14991584116704 72-73 21.148042324383287 28.553654011621028 29.155761992364894 21.14254167163079 74-75 21.117963819040053 28.66468210686014 29.025667031586643 21.191687042513163 76-77 21.094564774274783 28.676223301047578 28.972684598530208 21.256527326147438 78-79 21.12717611015833 28.66032531430431 28.974815842986928 21.23768273255043 80-81 21.116049347768133 28.66315402376147 28.96301834475758 21.257778283712813 82-83 21.19873823072678 28.58686765699622 29.054232466467994 21.16016164580901 84-85 21.345623351408456 28.608321523258912 28.878014725539952 21.168040399792684 86-87 21.1249882224666 28.66822215548041 28.96351342249906 21.24327619955393 88-89 21.288650310357703 28.598805134441985 28.895943796536272 21.216600758664043 90-91 21.291393351848136 28.647739460920945 28.926063970752814 21.134803216478108 92-93 21.292911188917664 28.66546635749722 28.89869546682753 21.142926986757583 94-95 21.18096040455059 28.74721002515615 28.856230098683323 21.215599471609934 96-97 21.23272043478346 28.87059519150404 28.963366889574633 20.93331748413787 98-99 22.18059676392509 30.737816670470515 29.3229247998975 17.758661765706897 100 21.028358918933527 31.796395642780272 23.32596404425965 23.849281394026548 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 629.0 1 717.5 2 1315.5 3 2025.5 4 2725.5 5 3955.0 6 4924.0 7 5665.0 8 6397.5 9 6759.0 10 6778.5 11 6957.5 12 7900.5 13 9839.0 14 13489.0 15 17766.0 16 21154.5 17 23533.0 18 24073.5 19 23116.0 20 22271.5 21 22348.0 22 24611.0 23 29891.0 24 38318.5 25 50029.5 26 65626.0 27 83487.0 28 101261.5 29 120052.0 30 139401.5 31 158436.0 32 177375.5 33 196401.0 34 216683.0 35 235301.5 36 251814.5 37 266667.5 38 275669.5 39 281308.0 40 287655.0 41 290699.0 42 290043.0 43 290162.0 44 293124.0 45 300002.5 46 294103.0 47 281505.0 48 269405.5 49 251236.5 50 235435.5 51 217215.0 52 196731.5 53 177151.5 54 156579.0 55 136715.5 56 119578.5 57 103285.0 58 87141.0 59 72568.5 60 58615.5 61 45761.5 62 35007.0 63 26221.0 64 19315.5 65 14218.0 66 10737.5 67 7721.5 68 5234.5 69 3827.0 70 2809.5 71 1784.0 72 1161.5 73 738.0 74 442.5 75 272.0 76 186.0 77 108.5 78 58.0 79 35.5 80 20.5 81 15.0 82 14.0 83 10.5 84 6.5 85 3.0 86 2.5 87 2.5 88 2.0 89 2.0 90 2.0 91 2.0 92 1.0 93 0.0 94 0.0 95 0.5 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0039860595005645925 6 1.4873356345390271E-5 7 0.0 8 0.0 9 1.4873356345390271E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.4874723590448881E-5 26-27 0.0 28-29 4.463626465882829E-5 30-31 0.0 32-33 2.9805299859199764E-5 34-35 0.0 36-37 5.31098907970882E-4 38-39 4.504261369074747E-5 40-41 1.8844645346789718E-4 42-43 6.813245312260117E-5 44-45 7.457083533108348E-4 46-47 0.0 48-49 7.702998862190038E-5 50-51 0.0 52-53 1.246166771539389E-4 54-55 0.0022474125586196846 56-57 0.0012130912076803483 58-59 1.505965127871499E-4 60-61 3.66929622260312E-4 62-63 8.832802910135545E-5 64-65 7.437484907766699E-4 66-67 0.001328009021988163 68-69 3.28695899839128E-4 70-71 7.21498387948688E-4 72-73 1.1721316327266185E-4 74-75 1.349159309321502E-4 76-77 8.494835734511918E-6 78-79 0.001720883928176983 80-81 0.0 82-83 9.831103383883186E-4 84-85 1.4905967893597344E-4 86-87 0.0 88-89 4.4568551022032646E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 3.066977205853651E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 49.0 20-21 144.0 22-23 333.0 24-25 472.0 26-27 999.0 28-29 2244.0 30-31 6882.0 32-33 9439.0 34-35 13636.0 36-37 22096.0 38-39 27206.0 40-41 27736.0 42-43 31990.0 44-45 39048.0 46-47 40468.0 48-49 38140.0 50-51 34544.0 52-53 33845.0 54-55 36950.0 56-57 39238.0 58-59 39377.0 60-61 41496.0 62-63 41434.0 64-65 46481.0 66-67 51212.0 68-69 52072.0 70-71 62868.0 72-73 42858.0 74-75 43061.0 76-77 45357.0 78-79 46538.0 80-81 46611.0 82-83 45158.0 84-85 44833.0 86-87 47203.0 88-89 48723.0 90-91 50009.0 92-93 50824.0 94-95 61824.0 96-97 202575.0 98-99 471136.0 100-101 4736323.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.92705111084227 #Duplication Level Percentage of deduplicated Percentage of total 1 90.38713696454785 78.57087274679951 2 6.955515427132399 12.092448900731798 3 1.5971656196289856 4.165106923499066 4 0.5525404207209631 1.921228375712698 5 0.21872136043817025 0.9506401438920891 6 0.10465672243791636 0.5458500156272394 7 0.0635107827776529 0.3864563542421844 8 0.03877201560551242 0.26962695857686014 9 0.02280277224152574 0.17839599732972028 >10 0.057375707949702794 0.7051028683992969 >50 0.001118785718595961 0.0660968048529616 >100 6.346748502277295E-4 0.11097004990605443 >500 4.874595056047193E-5 0.03720386043055055 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.9746712690780543E-5 0.0 2.9746712690780543E-5 0.0 3 0.0 2.9746712690780543E-5 0.0 2.9746712690780543E-5 0.0 4 0.0 4.462006903617081E-5 0.0 2.9746712690780543E-5 0.0 5 0.0 5.9493425381561086E-5 0.0 4.462006903617081E-5 0.0 6 0.0 5.9493425381561086E-5 0.0 4.462006903617081E-5 0.0 7 0.0 7.436678172695136E-5 0.0 4.462006903617081E-5 0.0 8 0.0 1.0411349441773189E-4 0.0 4.462006903617081E-5 1.4873356345390271E-5 9 0.0 2.3797370152624434E-4 0.0 4.462006903617081E-5 1.4873356345390271E-5 10-11 0.0 2.454103796989395E-4 0.0 5.9493425381561086E-5 1.4873356345390271E-5 12-13 0.0 2.6028373604432975E-4 0.0 6.693010355425622E-5 1.4873356345390271E-5 14-15 0.0 3.569605522893665E-4 0.0 8.924013807234162E-5 1.4873356345390271E-5 16-17 0.0 3.7183390863475675E-4 0.0 9.667681624503675E-5 1.4873356345390271E-5 18-19 0.0 4.238906558436227E-4 0.0 1.3386020710851244E-4 1.4873356345390271E-5 20-21 0.0 4.610740467070984E-4 0.0 1.4129688528120756E-4 1.4873356345390271E-5 22-23 0.0 4.833840812251838E-4 0.0 1.6360691979929297E-4 1.4873356345390271E-5 24-25 0.0 5.428775066067449E-4 0.0 1.7848027614468325E-4 1.4873356345390271E-5 26-27 0.0 5.874975756429157E-4 0.0 1.7848027614468325E-4 1.4873356345390271E-5 28-29 0.0 6.02370931988306E-4 0.0 2.6028373604432975E-4 1.4873356345390271E-5 30-31 0.0 6.395543228517816E-4 0.0 5.428775066067448E-4 1.4873356345390271E-5 32-33 0.0 6.395543228517816E-4 0.0 0.001435278887330161 1.4873356345390271E-5 34-35 0.0 7.362311390968184E-4 0.0 0.002565653969579822 2.9746712690780543E-5 36-37 0.0 8.403446335145503E-4 0.0 0.0043950768000628245 2.9746712690780543E-5 38-39 0.0 8.700913462053308E-4 0.0 0.0075407916671128665 2.9746712690780543E-5 40-41 0.0 8.998380588961113E-4 0.0 0.011155017259042704 2.9746712690780543E-5 42-43 0.0 9.072747370688065E-4 0.0 0.014345352195128917 2.9746712690780543E-5 44-45 0.0 0.0010113882314865385 0.0 0.01805625460330379 2.9746712690780543E-5 46-47 0.0 0.0011155017259042704 0.0 0.02228772448356732 2.9746712690780543E-5 48-49 0.0 0.0011155017259042704 0.0 0.026742294709011707 4.462006903617081E-5 50-51 1.4873356345390271E-5 0.0012493619330127827 0.0 0.03138278188877347 4.462006903617081E-5 52-53 1.4873356345390271E-5 0.0012493619330127827 0.0 0.03553988498731005 5.205674720886595E-5 54-55 1.4873356345390271E-5 0.0012493619330127827 0.0 0.04044809258128884 5.9493425381561086E-5 56-57 1.4873356345390271E-5 0.0012493619330127827 0.0 0.045267060037195286 6.693010355425622E-5 58-59 1.4873356345390271E-5 0.0012493619330127827 0.0 0.05036862126366415 7.436678172695136E-5 60-61 1.4873356345390271E-5 0.0012716719675308682 0.0 0.05517271536322521 7.436678172695136E-5 62-63 1.4873356345390271E-5 0.0012939820020489536 0.0 0.059865259290195844 1.0411349441773189E-4 64-65 1.4873356345390271E-5 0.0014724622781936369 0.0 0.06422315269939519 1.0411349441773189E-4 66-67 2.9746712690780543E-5 0.001487335634539027 0.0 0.06870003295935767 1.0411349441773189E-4 68-69 2.9746712690780543E-5 0.0015319557035751979 0.0 0.07328846339191056 1.0411349441773189E-4 70-71 2.9746712690780543E-5 0.0015617024162659786 0.0 0.07749018655948331 1.0411349441773189E-4 72-73 2.9746712690780543E-5 0.0015914491289567589 0.0 0.08108953879506775 1.1898685076312217E-4 74-75 2.9746712690780543E-5 0.0016732525888564055 0.0 0.08360313601743871 1.1898685076312217E-4 76-77 2.9746712690780543E-5 0.0017699294051014424 0.0 0.08597543635452846 1.1898685076312217E-4 78-79 2.9746712690780543E-5 0.0017996761177922229 0.0 0.08748508202358557 1.1898685076312217E-4 80-81 2.9746712690780543E-5 0.0017996761177922229 0.0 0.08798333946115615 1.1898685076312217E-4 82-83 2.9746712690780543E-5 0.0018219861523103083 0.0 0.08845185018603594 1.3386020710851244E-4 84-85 2.9746712690780543E-5 0.0018591695431737839 0.0 0.08879393738197991 1.4129688528120756E-4 86-87 2.9746712690780543E-5 0.0018889162558645644 0.0 0.08886086748553418 1.4873356345390272E-4 88 2.9746712690780543E-5 0.0020525231756638573 0.0 0.08886830416370686 1.6360691979929297E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7480 0.0 46.614674 1 CTTATAC 6200 0.0 38.809402 1 GTATCAA 13510 0.0 36.106506 1 ATCAACG 14925 0.0 32.243656 3 TCAACGC 15115 0.0 31.809402 4 CAACGCA 15430 0.0 31.188374 5 AACGCAG 15960 0.0 30.20637 6 TATCAAC 16765 0.0 29.017982 2 ACGCAGA 17550 0.0 27.444798 7 TATACAC 10240 0.0 26.915756 3 CGCAGAG 18000 0.0 26.807283 8 TTATACA 10135 0.0 25.122637 2 ACATCTC 10335 0.0 23.408009 8 ACACATC 10800 0.0 22.278645 6 GCAGAGT 22015 0.0 21.799059 9 TACACAT 13110 0.0 20.22255 5 TACATGG 15780 0.0 19.961422 2 GTACATG 16430 0.0 19.810768 1 CACATCT 12025 0.0 19.754433 7 CATCTCC 11985 0.0 19.747358 9 >>END_MODULE