##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138996_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10668502 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.421033805870778 18.0 18.0 30.0 18.0 33.0 2 31.342981142057244 32.0 32.0 33.0 27.0 33.0 3 31.871734850872222 33.0 31.0 33.0 29.0 33.0 4 32.585591585397836 33.0 33.0 33.0 31.0 34.0 5 33.0899689572163 33.0 33.0 34.0 33.0 34.0 6 37.02606495269907 38.0 38.0 38.0 36.0 38.0 7 37.146955495720015 38.0 38.0 38.0 36.0 38.0 8 37.15547346759648 38.0 38.0 38.0 36.0 38.0 9 37.34048669625783 38.0 38.0 38.0 37.0 38.0 10-11 37.37908100874893 38.0 38.0 38.0 37.0 38.0 12-13 37.41357708889214 38.0 38.0 38.0 37.0 38.0 14-15 37.41030751083892 38.0 38.0 38.0 37.0 38.0 16-17 37.34486927030618 38.0 38.0 38.0 37.0 38.0 18-19 37.398938951316694 38.0 38.0 38.0 37.0 38.0 20-21 37.43592546350029 38.0 38.0 38.0 37.0 38.0 22-23 37.45279328107109 38.0 38.0 38.0 37.0 38.0 24-25 37.456744276414895 38.0 38.0 38.0 37.0 38.0 26-27 37.4304861990766 38.0 38.0 38.0 37.0 38.0 28-29 37.408112277564456 38.0 38.0 38.0 37.0 38.0 30-31 37.31195482228486 38.0 38.0 38.0 37.0 38.0 32-33 37.3767862563698 38.0 38.0 38.0 37.0 38.0 34-35 37.38627897673362 38.0 38.0 38.0 37.0 38.0 36-37 37.36990878058946 38.0 38.0 38.0 37.0 38.0 38-39 37.35128481535372 38.0 38.0 38.0 37.0 38.0 40-41 37.33866540013622 38.0 38.0 38.0 37.0 38.0 42-43 37.32522669323053 38.0 38.0 38.0 37.0 38.0 44-45 37.29380879174366 38.0 38.0 38.0 37.0 38.0 46-47 37.268183030593114 38.0 38.0 38.0 37.0 38.0 48-49 37.23913510030351 38.0 38.0 38.0 37.0 38.0 50-51 37.19487643504466 38.0 38.0 38.0 37.0 38.0 52-53 37.170025301045996 38.0 38.0 38.0 37.0 38.0 54-55 37.15594216176846 38.0 38.0 38.0 36.5 38.0 56-57 37.14570627452646 38.0 38.0 38.0 36.0 38.0 58-59 37.13471258459667 38.0 38.0 38.0 36.0 38.0 60-61 37.1323299982989 38.0 38.0 38.0 36.0 38.0 62-63 37.137470067759594 38.0 38.0 38.0 36.0 38.0 64-65 37.139115643296165 38.0 38.0 38.0 36.0 38.0 66-67 37.119591390398185 38.0 38.0 38.0 36.0 38.0 68-69 37.11836742549053 38.0 38.0 38.0 36.0 38.0 70-71 37.099078083113135 38.0 38.0 38.0 36.0 38.0 72-73 37.0861695140578 38.0 38.0 38.0 36.0 38.0 74-75 37.071155538573514 38.0 38.0 38.0 36.0 38.0 76-77 37.07069650101659 38.0 38.0 38.0 36.0 38.0 78-79 37.05034612847763 38.0 38.0 38.0 36.0 38.0 80-81 37.04467253219546 38.0 38.0 38.0 36.0 38.0 82-83 36.99077628884372 38.0 38.0 38.0 36.0 38.0 84-85 36.975830891437454 38.0 38.0 38.0 36.0 38.0 86-87 36.96467366757089 38.0 38.0 38.0 36.0 38.0 88-89 36.96457096915324 38.0 38.0 38.0 36.0 38.0 90-91 36.955051975167585 38.0 38.0 38.0 36.0 38.0 92-93 36.93320076514322 38.0 38.0 38.0 35.0 38.0 94-95 36.90464995291491 38.0 38.0 38.0 35.0 38.0 96-97 36.87015259408284 38.0 38.0 38.0 35.0 38.0 98-99 36.86898469465845 38.0 38.0 38.0 35.0 38.0 100 35.297635808136945 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 9.0 18 20.0 19 52.0 20 136.0 21 338.0 22 853.0 23 2095.0 24 4803.0 25 8861.0 26 15510.0 27 25409.0 28 39048.0 29 57172.0 30 78904.0 31 105993.0 32 140736.0 33 191497.0 34 283134.0 35 505302.0 36 1527099.0 37 7681531.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.99215616213036 18.686166061552033 16.578513084592384 23.74316469172523 2 14.439103113926324 20.84322529372162 42.04142690204517 22.67624469030688 3 18.17968445804294 25.797586202823975 30.599628701386568 25.423100637746515 4 12.440815391452444 17.82533408235747 38.889135209886895 30.84471531630319 5 13.362954611410776 37.39517475810425 35.59428591354219 13.64758471694279 6 29.973477063602743 37.77826540220923 18.843657713144733 13.404599821043291 7 26.482443364588583 32.45176314350412 23.24802488671793 17.817768605189368 8 24.092482712193334 37.13853172638483 21.189441591706128 17.57954396971571 9 25.44345808115362 17.03948911949337 21.431969287479767 36.08508351187324 10-11 24.1799873140114 26.81343132558083 28.981297493369006 20.025283867038766 12-13 24.889133909253044 24.36252290738877 29.12154669151739 21.626796491840793 14-15 22.104855958221687 25.696231767121567 26.661971849468653 25.536940425188092 16-17 21.765759616485987 28.770285650225308 27.391877510075922 22.07207722321278 18-19 21.80607924149051 27.962904257786143 29.078998157379548 21.152018343343798 20-21 22.520894913251173 27.091975299731374 29.00149094717795 21.385638839839505 22-23 22.29654631381929 27.051808151730132 28.82738112032882 21.824264414121757 24-25 22.074888684278072 27.160712735598512 28.90458092623455 21.859817653888864 26-27 21.969458654875638 27.314191707908126 28.884664860775118 21.83168477644112 28-29 21.970497913756866 27.23916967377844 28.969337141963887 21.820995270500806 30-31 22.155691544658787 27.17843578395077 28.876074569181164 21.789798102209282 32-33 21.991683970974808 27.36738863776746 28.818493132984575 21.822434258273155 34-35 22.179397973787285 27.27955050467008 28.809557660439893 21.73149386110274 36-37 22.0476973870582 27.2556537944653 28.81591938701741 21.8807294314591 38-39 21.93509582047519 27.332161321533942 28.93725390703657 21.795488950954297 40-41 22.142656596602485 27.192521512795754 28.82292888364456 21.841893006957203 42-43 22.038093119939333 27.283088952690893 28.69613500028375 21.982682927086024 44-45 22.063445443533677 27.372744434723757 28.625704467935986 21.938105653806584 46-47 22.15336246578564 27.297604718845104 28.402402313393356 22.146630501975903 48-49 22.08217830374215 27.37720446924542 28.44333537769102 22.097281849321412 50-51 22.03438930560522 27.541904892587198 28.352498109163648 22.07120769264393 52-53 22.21916704920744 27.456242335205182 28.268434287915646 22.05615632767173 54-55 22.193443555016735 27.393457111540464 28.266726490037865 22.146372843404933 56-57 22.152066941787915 27.503710292382273 28.2431325577314 22.101090208098412 58-59 22.1021345107005 27.49779424580093 28.3163908895969 22.083680353901677 60-61 22.173885567303927 27.522759759218694 28.275086230585373 22.028268442892003 62-63 22.16439816346588 27.603707417687644 28.27248768228025 21.95940673656623 64-65 22.12416560864228 27.53141084955824 28.251417877469315 22.093005664330168 66-67 22.127870907147162 27.581608275832565 28.113942586326328 22.176578230693945 68-69 22.07987389735442 27.596020929472658 28.179411282803596 22.144693890369318 70-71 22.11590401304272 27.37163473891007 28.23048812691994 22.281973121127265 72-73 22.206446391899267 27.360703528131005 28.140288554010823 22.292561525958902 74-75 22.06445279816404 27.53739430258489 28.10438665617092 22.29376624308015 76-77 22.24411560689414 27.43842613278906 28.00750475661731 22.30995350369949 78-79 22.213516260471195 27.448706280829043 27.944449047458132 22.39332841124163 80-81 22.1933406929828 27.54754856901082 27.90679767914564 22.352313058860734 82-83 22.244922787500983 27.50807023294839 27.969022350025803 22.277984629524827 84-85 22.300941174730664 27.51341090175669 27.907646906384088 22.278001017128556 86-87 22.24967135318068 27.529652769240798 27.969670373308368 22.251005504270154 88-89 22.294822551763147 27.531279878087084 27.911531148470342 22.262366421679427 90-91 22.320061196763717 27.572132969334234 27.87908104662807 22.228724787273975 92-93 22.37333995495165 27.56264748485806 27.894238996271998 22.16977356391829 94-95 22.26054493207404 27.615798196543935 27.865629319843894 22.258027551538135 96-97 22.38318634067079 27.701398148676116 27.929533622784135 21.985881887868956 98-99 23.44329663890221 29.576773991512624 28.174443094970364 18.8054862746148 100 22.257540123605942 30.49258471732255 22.163627528364398 25.08624763070711 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2279.0 1 2172.0 2 2839.5 3 3911.0 4 4529.5 5 5487.5 6 6806.5 7 10187.0 8 14081.5 9 15605.5 10 15164.0 11 14466.5 12 15382.0 13 17794.0 14 22345.5 15 27466.0 16 30616.0 17 31796.5 18 31266.0 19 29565.0 20 27987.0 21 27836.0 22 30368.5 23 36440.5 24 46496.0 25 60852.0 26 78558.0 27 98835.0 28 120168.0 29 144133.0 30 168393.0 31 191282.5 32 216613.5 33 242412.5 34 267155.5 35 290051.5 36 315634.0 37 339535.5 38 358875.5 39 377575.5 40 393936.5 41 407506.0 42 416855.5 43 427843.0 44 436978.5 45 443596.5 46 445408.0 47 440284.0 48 436934.5 49 432465.0 50 424324.5 51 411541.0 52 394806.0 53 373661.5 54 349166.5 55 324623.5 56 298281.0 57 269168.0 58 239478.5 59 207096.5 60 171724.0 61 138270.5 62 108621.5 63 83294.5 64 61780.0 65 44916.0 66 33077.0 67 24999.0 68 18921.5 69 13943.5 70 10135.0 71 7246.5 72 5034.5 73 3394.5 74 2208.5 75 1388.0 76 870.5 77 507.0 78 295.0 79 175.0 80 114.5 81 80.5 82 59.0 83 40.0 84 30.0 85 24.5 86 17.5 87 17.0 88 14.5 89 6.5 90 2.5 91 2.0 92 2.5 93 3.0 94 2.0 95 0.5 96 0.5 97 0.5 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00701129361929163 3 0.0 4 0.0037399814894349737 5 0.0025308145417229145 6 0.0 7 0.0 8 0.0 9 1.7809435663976067E-4 10-11 3.6556210047108766E-4 12-13 9.37338719156635E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 7.077194901776268E-4 24-25 0.0013920716317877729 26-27 0.0 28-29 0.002006706619820382 30-31 0.0029698870345053956 32-33 5.920251394548106E-4 34-35 1.883096963863934E-5 36-37 0.001067027353387845 38-39 0.0022093857646809773 40-41 0.0015812116243629848 42-43 0.0 44-45 0.0 46-47 0.0014432347210115892 48-49 5.362753725285627E-4 50-51 0.0017955080215792593 52-53 0.0026198258254930564 54-55 0.0019897722727962902 56-57 0.0019821118648017974 58-59 0.0022112335084697276 60-61 9.663864483274178E-4 62-63 8.047403484892426E-4 64-65 0.0034256303095667236 66-67 0.0025058300590487226 68-69 7.291332480594639E-5 70-71 0.002903735853082938 72-73 0.010229825309848013 74-75 0.012138147808280009 76-77 0.004898749146617465 78-79 0.004597982353290746 80-81 3.663952352432405E-4 82-83 1.2132771343364709E-4 84-85 8.339846753647933E-5 86-87 0.001855444608812297 88-89 0.0045967980502791324 90-91 4.906854493449149E-4 92-93 0.0013705272153305562 94-95 0.002389419580334205 96-97 0.0027182815460406137 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 69.0 20-21 247.0 22-23 512.0 24-25 654.0 26-27 1836.0 28-29 4750.0 30-31 14802.0 32-33 18934.0 34-35 26730.0 36-37 42287.0 38-39 47685.0 40-41 47764.0 42-43 55034.0 44-45 65605.0 46-47 69105.0 48-49 65095.0 50-51 59351.0 52-53 56462.0 54-55 61754.0 56-57 63910.0 58-59 66962.0 60-61 66133.0 62-63 65631.0 64-65 70664.0 66-67 76634.0 68-69 77598.0 70-71 80762.0 72-73 72672.0 74-75 71811.0 76-77 76188.0 78-79 78055.0 80-81 77804.0 82-83 73853.0 84-85 72791.0 86-87 75743.0 88-89 79027.0 90-91 80924.0 92-93 80350.0 94-95 96535.0 96-97 329994.0 98-99 746305.0 100-101 7449480.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.42265837320028 #Duplication Level Percentage of deduplicated Percentage of total 1 89.94753917422554 76.83557910389916 2 7.1102123090041145 12.14746474065964 3 1.6789557233196555 4.302625835305929 4 0.5843631346859821 1.9967140968069226 5 0.25210709187626945 1.0767828991403792 6 0.13838851507996683 0.7092908907870289 7 0.08160236707779561 0.48794837877317143 8 0.05338777032462081 0.36484202125975707 9 0.03600203614606971 0.27678506710007894 >10 0.11390258627853138 1.506041281312784 >50 0.0026116171705556457 0.14642852115953747 >100 8.736228131974578E-4 0.10866661616160038 >500 3.6036280513680466E-5 0.020947307738593053 >1k 1.801571720668472E-5 0.01988323989532901 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.8120161574699053E-5 0.0 0.0 0.0 3 0.0 2.8120161574699053E-5 0.0 1.87467743831327E-5 0.0 4 0.0 5.6240323149398106E-5 0.0 1.87467743831327E-5 0.0 5 0.0 6.561371034096446E-5 0.0 1.87467743831327E-5 0.0 6 9.373387191566351E-5 6.561371034096446E-5 0.0 2.8120161574699053E-5 0.0 7 9.373387191566351E-5 7.49870975325308E-5 0.0 2.8120161574699053E-5 0.0 8 9.373387191566351E-5 7.49870975325308E-5 0.0 2.8120161574699053E-5 0.0 9 9.373387191566351E-5 1.4060080787349526E-4 0.0 7.49870975325308E-5 0.0 10-11 9.84205655114467E-5 1.4060080787349526E-4 0.0 1.2185403349036257E-4 0.0 12-13 1.0310725910722987E-4 1.4060080787349526E-4 0.0 1.4528750146927845E-4 0.0 14-15 1.0779395270301304E-4 1.7809435663976067E-4 0.0 1.499741950650616E-4 4.686693595783175E-6 16-17 1.6403427585241114E-4 1.921544374271102E-4 0.0 1.734076630439775E-4 9.37338719156635E-6 18-19 1.6872096944819433E-4 2.062145182144597E-4 0.0 1.8746774383132702E-4 9.37338719156635E-6 20-21 1.6872096944819433E-4 2.2496129259759243E-4 0.0 2.062145182144597E-4 9.37338719156635E-6 22-23 1.734076630439775E-4 2.3433467978915877E-4 0.0 2.2496129259759243E-4 9.37338719156635E-6 24-25 1.7809435663976067E-4 2.4839476057650833E-4 0.0 2.2496129259759243E-4 9.37338719156635E-6 26-27 1.7809435663976067E-4 2.6245484136385783E-4 0.0 2.952616965343401E-4 9.37338719156635E-6 28-29 1.7809435663976067E-4 2.67141534959641E-4 0.0 5.436564571108484E-4 9.37338719156635E-6 30-31 1.7809435663976067E-4 3.280685517048223E-4 0.0 0.0012982141260319397 9.37338719156635E-6 32-33 1.7809435663976067E-4 3.3744193889638865E-4 0.0 0.0030088572884927984 9.37338719156635E-6 34-35 1.921544374271102E-4 3.843088748542204E-4 0.0 0.005305337150426555 9.37338719156635E-6 36-37 2.0621451821445973E-4 4.4054919800361853E-4 0.0 0.008890657751200685 9.37338719156635E-6 38-39 2.0621451821445973E-4 4.592959723867512E-4 0.0 0.01745793364429233 9.37338719156635E-6 40-41 2.0621451821445973E-4 5.014762147487997E-4 0.0 0.027210943017117115 9.37338719156635E-6 42-43 2.0621451821445973E-4 5.202229891319325E-4 0.0 0.03407226244134369 9.37338719156635E-6 44-45 2.0621451821445973E-4 5.717766186855474E-4 0.0 0.041631899211341944 9.37338719156635E-6 46-47 2.0621451821445973E-4 6.092701674518128E-4 0.0 0.050372582767477574 9.37338719156635E-6 48-49 2.0621451821445973E-4 6.092701674518128E-4 0.0 0.05910857963001741 9.37338719156635E-6 50-51 2.2027459900180927E-4 6.327036354307287E-4 0.0 0.06812577810830424 9.37338719156635E-6 52-53 2.2496129259759243E-4 6.373903290265119E-4 0.0 0.08909873194943395 9.37338719156635E-6 54-55 2.2496129259759243E-4 6.467637162180782E-4 0.0 0.11523173543952094 9.37338719156635E-6 56-57 2.2496129259759243E-4 6.561371034096446E-4 0.0 0.15291743864321344 1.4060080787349525E-5 58-59 2.2496129259759243E-4 6.561371034096446E-4 0.0 0.18167030385334323 1.87467743831327E-5 60-61 2.483947605765083E-4 6.701971841969941E-4 0.0 0.19483991285749397 1.87467743831327E-5 62-63 2.999483901301232E-4 6.842572649843437E-4 0.0 0.20531467304406936 1.87467743831327E-5 64-65 2.999483901301232E-4 7.967379112831398E-4 0.0 0.21030131502998267 1.87467743831327E-5 66-67 3.093217773216896E-4 8.01424604878923E-4 0.0 0.21518484975678873 2.3433467978915877E-5 68-69 3.093217773216896E-4 8.107979920704894E-4 0.0 0.22021835867865985 3.280685517048223E-5 70-71 3.186951645132559E-4 8.154846856662726E-4 0.0 0.22428640871979966 3.74935487662654E-5 72-73 3.5618871327952134E-4 8.154846856662726E-4 0.0 0.2273374462506545 3.74935487662654E-5 74-75 3.6087540687530453E-4 8.342314600494052E-4 0.0 0.22992918780912258 3.74935487662654E-5 76-77 3.655621004710877E-4 8.436048472409716E-4 0.0 0.23263809670748525 3.74935487662654E-5 78-79 3.655621004710877E-4 8.52978234432538E-4 0.0 0.23407691164139072 3.74935487662654E-5 80-81 3.655621004710877E-4 8.576649280283211E-4 0.0 0.23468618180884251 3.74935487662654E-5 82-83 3.7024879406687085E-4 8.623516216241043E-4 0.0 0.23506580399010096 3.74935487662654E-5 84-85 3.7493548766265403E-4 8.623516216241043E-4 0.0 0.23525795842752806 3.74935487662654E-5 86-87 3.889955684500036E-4 8.623516216241043E-4 0.0 0.2353844991546142 3.74935487662654E-5 88 4.030556492373531E-4 8.81098396007237E-4 0.0 0.2354126193161889 3.74935487662654E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12360 0.0 51.079796 1 GTATCAA 22475 0.0 36.85375 1 TCAACGC 26740 0.0 30.973438 4 ATCAACG 27005 0.0 30.653364 3 CAACGCA 27640 0.0 29.93183 5 TATCAAC 28525 0.0 29.31221 2 AACGCAG 28400 0.0 29.22233 6 ACGCAGA 32780 0.0 25.33099 7 CGCAGAG 33870 0.0 24.46434 8 GTACATG 30285 0.0 21.206507 1 GTGGTAT 6550 0.0 21.087118 1 GCAGAGT 39665 0.0 20.94505 9 TACATGG 30945 0.0 20.866854 2 ACATGGG 30615 0.0 20.364515 3 TGGTATC 6185 0.0 20.288597 2 GAGTACT 22360 0.0 19.931593 12-13 CAGAGTA 38690 0.0 18.911217 10-11 AGAGTAC 35220 0.0 18.71491 10-11 CATGGGG 22620 0.0 17.9704 4 GTACTTT 25810 0.0 17.259157 14-15 >>END_MODULE