##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138995_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7019641 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.963831483689834 18.0 18.0 30.0 18.0 33.0 2 31.227659505664178 32.0 32.0 33.0 27.0 33.0 3 31.831435111852585 33.0 31.0 33.0 29.0 33.0 4 32.57223695627739 33.0 33.0 33.0 31.0 34.0 5 33.088759952253966 33.0 33.0 34.0 33.0 34.0 6 37.040507912014306 38.0 38.0 38.0 36.0 38.0 7 37.16424543648315 38.0 38.0 38.0 36.0 38.0 8 37.17358907670634 38.0 38.0 38.0 36.0 38.0 9 37.35755261558248 38.0 38.0 38.0 37.0 38.0 10-11 37.39737822774698 38.0 38.0 38.0 37.0 38.0 12-13 37.43451374507613 38.0 38.0 38.0 37.0 38.0 14-15 37.43097788049275 38.0 38.0 38.0 37.0 38.0 16-17 37.36532203000125 38.0 38.0 38.0 37.0 38.0 18-19 37.41856414024592 38.0 38.0 38.0 37.0 38.0 20-21 37.45550780948282 38.0 38.0 38.0 37.0 38.0 22-23 37.47164568958463 38.0 38.0 38.0 37.0 38.0 24-25 37.477851744063265 38.0 38.0 38.0 37.0 38.0 26-27 37.452453742070134 38.0 38.0 38.0 37.0 38.0 28-29 37.42822452411873 38.0 38.0 38.0 37.0 38.0 30-31 37.33216078471611 38.0 38.0 38.0 37.0 38.0 32-33 37.39766367324201 38.0 38.0 38.0 37.0 38.0 34-35 37.406892904823714 38.0 38.0 38.0 37.0 38.0 36-37 37.39081217047142 38.0 38.0 38.0 37.0 38.0 38-39 37.36894813509437 38.0 38.0 38.0 37.0 38.0 40-41 37.36607743212818 38.0 38.0 38.0 37.0 38.0 42-43 37.356298099307196 38.0 38.0 38.0 37.0 38.0 44-45 37.32955275943242 38.0 38.0 38.0 37.0 38.0 46-47 37.310571302008064 38.0 38.0 38.0 37.0 38.0 48-49 37.287542809671095 38.0 38.0 38.0 37.0 38.0 50-51 37.24527391473309 38.0 38.0 38.0 37.0 38.0 52-53 37.2214947608274 38.0 38.0 38.0 37.0 38.0 54-55 37.20550370603293 38.0 38.0 38.0 37.0 38.0 56-57 37.19498956460703 38.0 38.0 38.0 37.0 38.0 58-59 37.18200582816095 38.0 38.0 38.0 36.5 38.0 60-61 37.178021466077055 38.0 38.0 38.0 36.0 38.0 62-63 37.18227273024646 38.0 38.0 38.0 36.0 38.0 64-65 37.18246670186373 38.0 38.0 38.0 36.0 38.0 66-67 37.16159872751303 38.0 38.0 38.0 36.0 38.0 68-69 37.15657667915657 38.0 38.0 38.0 36.0 38.0 70-71 37.136869817997336 38.0 38.0 38.0 36.0 38.0 72-73 37.12300097005231 38.0 38.0 38.0 36.0 38.0 74-75 37.10955414651586 38.0 38.0 38.0 36.0 38.0 76-77 37.10959351793004 38.0 38.0 38.0 36.0 38.0 78-79 37.09114707091524 38.0 38.0 38.0 36.0 38.0 80-81 37.085756573127284 38.0 38.0 38.0 36.0 38.0 82-83 37.034718134965665 38.0 38.0 38.0 36.0 38.0 84-85 37.02160915333222 38.0 38.0 38.0 36.0 38.0 86-87 37.0105598950082 38.0 38.0 38.0 36.0 38.0 88-89 37.013265518087415 38.0 38.0 38.0 36.0 38.0 90-91 37.001375575474746 38.0 38.0 38.0 36.0 38.0 92-93 36.98157330667537 38.0 38.0 38.0 36.0 38.0 94-95 36.950462874518706 38.0 38.0 38.0 35.5 38.0 96-97 36.91838898554224 38.0 38.0 38.0 35.0 38.0 98-99 36.92076772485365 38.0 38.0 38.0 35.0 38.0 100 35.37124646213574 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 15.0 19 31.0 20 78.0 21 193.0 22 530.0 23 1325.0 24 2797.0 25 5500.0 26 9562.0 27 15724.0 28 23942.0 29 35111.0 30 48683.0 31 64973.0 32 86093.0 33 118948.0 34 178782.0 35 323438.0 36 1004607.0 37 5099306.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.51021982463206 18.62553939724268 16.72665311516643 24.137587662958833 2 14.139135816328915 20.771044268000313 42.232313970511555 22.857505945159218 3 17.87987448360963 25.88756319589563 30.723593984364726 25.50896833613001 4 12.263670737247718 17.87546811397171 39.0583599061514 30.802501242629166 5 13.28325357897391 37.43066071939904 35.829941576785714 13.456144124841336 6 29.945790675050194 37.98652951055474 18.86226090479556 13.205418909599508 7 26.420225763682215 32.37010268758758 23.39290570557668 17.81676584315352 8 24.015900528246387 37.20505079960642 21.318554609844007 17.460494062303187 9 25.302939885552323 17.014166137317552 21.36934056467673 36.313553412453395 10-11 24.072844979193313 26.740361549537088 29.187638246463234 19.999155224806362 12-13 24.80776615269685 24.14445583075088 29.253335694327937 21.794442322224334 14-15 21.968317183172186 25.513014127075728 26.62455245218381 25.894116237568277 16-17 21.890335987267726 28.678311326747334 27.261458242665114 22.16989444331982 18-19 21.921348969270653 27.9812457645626 28.756449225822234 21.340956040344512 20-21 22.595838827782472 27.1663586356144 28.58912090879453 21.648681627808596 22-23 22.309261536951432 27.18069621495207 28.487608466828824 22.02243378126768 24-25 22.1408829674266 27.290665533365782 28.57600083886301 21.992450660344613 26-27 22.141013802692605 27.478545537544473 28.47110071476169 21.909339945001236 28-29 22.107220926422936 27.410715138221253 28.51805705446922 21.964006880886586 30-31 22.361555171905092 27.262538913771976 28.443743596665332 21.932162317657593 32-33 22.11412280064778 27.40453500624084 28.488094914238644 21.993247278872733 34-35 22.228454955684764 27.29920804466109 28.522695530851138 21.949641468803012 36-37 22.16415942887996 27.374985727163033 28.47950248476464 21.981352359192368 38-39 22.04422457417539 27.353590338997552 28.640987993170558 21.961197093656494 40-41 22.246604077328122 27.216075154084233 28.563969019731505 21.97335174885614 42-43 22.182496244815837 27.209235510861674 28.511119902138088 22.097148342184404 44-45 22.13770108148669 27.374143473473218 28.410350199170466 22.077805245869627 46-47 22.30504634801933 27.22377434220536 28.179847242764026 22.291332067011286 48-49 22.208174161096792 27.330298192420038 28.210974975811986 22.25055267067118 50-51 22.11805033347678 27.43642796410155 28.218292902655158 22.227228799766515 52-53 22.26811625075146 27.38749384436411 28.165187354832007 22.179202550052423 54-55 22.26033645456568 27.282253853286893 28.142760707486026 22.314648984661396 56-57 22.309203626103614 27.466337181576762 28.03400958834944 22.190449603970183 58-59 22.164861443884444 27.55899154343612 28.20747194957809 22.068675063101345 60-61 22.2714974769352 27.65946488751766 28.013407017484344 22.0556306180628 62-63 22.18629361568195 27.842472022760283 27.98312034654461 21.988114015013153 64-65 22.1522115531558 27.741747934824456 27.993878160167547 22.11216235185219 66-67 22.164033101935924 27.775091000215152 27.841196705362535 22.219679192486392 68-69 22.13862909234897 27.70396435533841 27.95093008074953 22.206476471563086 70-71 22.181562948030013 27.46846766008443 27.981471622190185 22.368497769695374 72-73 22.32984873671899 27.368375115802973 27.94250665187738 22.359269495600653 74-75 22.232164142904647 27.49064858090014 27.910210797028647 22.36697647916657 76-77 22.315713315096847 27.47736200408052 27.788695520416535 22.418229160406103 78-79 22.272201358653202 27.465346346924402 27.760011112581246 22.502441181841153 80-81 22.31159453787032 27.50918785390822 27.74533174546111 22.43388586276035 82-83 22.384306859900466 27.486539412073213 27.78687098503876 22.34228274298756 84-85 22.433430923514646 27.468164563521334 27.755026271917004 22.343378241047017 86-87 22.30121310944731 27.512736545432432 27.796280390914973 22.38976995420529 88-89 22.376187708264574 27.49792611278697 27.753369524015696 22.372516654932763 90-91 22.405077445866578 27.5661948816249 27.70777290226181 22.320954770246722 92-93 22.433622399056386 27.52901864043152 27.751202455972983 22.286156504539107 94-95 22.330420193916613 27.608376476494968 27.707023090909573 22.354180238678843 96-97 22.442523211641973 27.65929670733247 27.774897642110336 22.123282438915222 98-99 23.50471040382868 29.592990950848563 28.030515298444296 18.87178334687846 100 22.388640914617465 30.476454521141783 21.972259344017193 25.162645220223556 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 623.0 1 708.0 2 1262.5 3 1906.0 4 2307.0 5 2885.5 6 3565.0 7 5081.5 8 6748.5 9 7441.0 10 7434.5 11 7410.5 12 8057.0 13 9413.0 14 11864.5 15 14576.5 16 16382.0 17 17217.0 18 17217.0 19 16600.0 20 16160.5 21 16774.5 22 19101.5 23 23479.5 24 30162.5 25 39801.5 26 51512.0 27 64839.5 28 79788.0 29 95524.0 30 110215.5 31 124806.5 32 141501.0 33 158726.0 34 174771.5 35 189641.0 36 206520.0 37 221140.0 38 232411.0 39 244559.0 40 256799.5 41 266729.5 42 274178.5 43 287001.0 44 295939.5 45 297738.0 46 297288.0 47 294326.5 48 293024.5 49 289256.0 50 283302.0 51 274491.0 52 264413.0 53 251538.0 54 234315.5 55 216457.5 56 197240.0 57 177031.5 58 157173.5 59 135709.0 60 112235.5 61 89875.0 62 70244.0 63 53485.5 64 39398.0 65 28757.5 66 20950.0 67 15820.0 68 11966.5 69 8779.5 70 6414.5 71 4531.5 72 3231.5 73 2258.0 74 1509.0 75 957.5 76 565.0 77 339.5 78 204.5 79 114.0 80 63.0 81 39.5 82 31.5 83 23.5 84 15.0 85 10.5 86 9.5 87 8.5 88 7.0 89 5.0 90 2.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006909185241809375 3 0.0 4 0.003561435691654317 5 0.002436022013091553 6 0.0 7 0.0 8 0.0 9 1.9944039873264174E-4 10-11 3.1340634086557986E-4 12-13 7.1228713833086335E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 7.336787464379184E-4 24-25 0.0014602955609721835 26-27 0.0 28-29 0.0018597030075672813 30-31 0.0030088394998738356 32-33 5.426481070541898E-4 34-35 1.4306195648527386E-5 36-37 0.0011762400654333743 38-39 0.0024916985390436917 40-41 0.0015770429995242104 42-43 0.0 44-45 0.0 46-47 0.0013015528923152493 48-49 5.475803276291496E-4 50-51 0.001690063624567033 52-53 0.002463316795418021 54-55 0.0018146516328175154 56-57 0.0017347664777059026 58-59 0.002066104203469942 60-61 8.596529780489914E-4 62-63 6.645610385018075E-4 64-65 0.0032601648087228624 66-67 0.0023129797129725466 68-69 7.11602352177855E-5 70-71 0.00268785858386382 72-73 0.010329210370913652 74-75 0.01177258163303638 76-77 0.005094051064141543 78-79 0.0041794089178199606 80-81 3.1593280741051995E-4 82-83 9.223161605889944E-5 84-85 5.071959267433253E-5 86-87 0.0016279193452048144 88-89 0.004754088946339145 90-91 4.5110440334285713E-4 92-93 0.001120668703015089 94-95 0.0022362934876216734 96-97 0.002546329752572062 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 32.0 20-21 129.0 22-23 276.0 24-25 363.0 26-27 1009.0 28-29 2968.0 30-31 9442.0 32-33 11853.0 34-35 16124.0 36-37 26675.0 38-39 31394.0 40-41 31392.0 42-43 35954.0 44-45 41634.0 46-47 42917.0 48-49 41758.0 50-51 38640.0 52-53 36926.0 54-55 40058.0 56-57 41115.0 58-59 43307.0 60-61 44446.0 62-63 43815.0 64-65 47128.0 66-67 52332.0 68-69 54801.0 70-71 60083.0 72-73 48801.0 74-75 47278.0 76-77 48749.0 78-79 51511.0 80-81 51123.0 82-83 48785.0 84-85 48220.0 86-87 49709.0 88-89 51827.0 90-91 53037.0 92-93 53036.0 94-95 63495.0 96-97 220554.0 98-99 492396.0 100-101 4894549.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.21325595964899 #Duplication Level Percentage of deduplicated Percentage of total 1 89.0667132658203 75.00597921739188 2 7.536999964304224 12.69430614323634 3 1.8686945815429827 4.721065653176651 4 0.703667596017807 2.370325574958339 5 0.32780482057002364 1.3802755629735106 6 0.16573103807632314 0.837405019798784 7 0.10457860190332822 0.6164833198991051 8 0.056496551118516196 0.3806206816144798 9 0.04204450563057396 0.31866342429279854 >10 0.12577425527135588 1.5430852193708873 >50 0.0011483032193536837 0.06086293595822731 >100 2.913706235995213E-4 0.03711881266582221 >500 5.51459016222924E-5 0.03380843466308965 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.4245742766617267E-5 1.4245742766617267E-5 2 0.0 2.8491485533234534E-5 0.0 1.4245742766617267E-5 1.4245742766617267E-5 3 0.0 2.8491485533234534E-5 0.0 1.4245742766617267E-5 1.4245742766617267E-5 4 0.0 4.27372282998518E-5 0.0 1.4245742766617267E-5 1.4245742766617267E-5 5 0.0 4.27372282998518E-5 0.0 1.4245742766617267E-5 1.4245742766617267E-5 6 0.0 4.27372282998518E-5 0.0 1.4245742766617267E-5 1.4245742766617267E-5 7 0.0 4.27372282998518E-5 0.0 2.8491485533234534E-5 1.4245742766617267E-5 8 0.0 4.27372282998518E-5 0.0 2.8491485533234534E-5 1.4245742766617267E-5 9 0.0 1.5670317043278993E-4 0.0 1.1396594213293814E-4 1.4245742766617267E-5 10-11 0.0 1.5670317043278993E-4 0.0 1.282116848995554E-4 1.4245742766617267E-5 12-13 0.0 1.5670317043278993E-4 0.0 1.282116848995554E-4 1.4245742766617267E-5 14-15 0.0 2.4930049841580216E-4 0.0 1.5670317043278993E-4 3.561435691654317E-5 16-17 0.0 2.6354624118241944E-4 0.0 1.923175273493331E-4 4.27372282998518E-5 18-19 0.0 2.777919839490367E-4 0.0 1.9944039873264174E-4 4.27372282998518E-5 20-21 0.0 2.8491485533234536E-4 0.0 2.1368614149925902E-4 4.27372282998518E-5 22-23 0.0 3.1340634086557986E-4 0.0 2.350547556491849E-4 4.9860099683160435E-5 24-25 0.0 3.2765208363219714E-4 0.0 2.4217762703249355E-4 7.122871383308634E-5 26-27 0.0 3.418978263988144E-4 0.0 2.706691125657281E-4 8.54744565997036E-5 28-29 0.0 3.4902069778212306E-4 0.0 5.05723868214913E-4 8.54744565997036E-5 30-31 0.0 3.703893119320489E-4 0.0 0.001168150906862616 8.54744565997036E-5 32-33 0.0 3.846350546986662E-4 0.0 0.0025571108266077996 8.54744565997036E-5 34-35 0.0 4.701095112983698E-4 0.0 0.004259477087218563 8.54744565997036E-5 36-37 0.0 5.627068392813821E-4 0.0 0.0068165879138263625 8.54744565997036E-5 38-39 0.0 6.481812958810856E-4 0.0 0.014381077322900133 8.54744565997036E-5 40-41 0.0 6.837956527976288E-4 0.0 0.022764696941054395 8.54744565997036E-5 42-43 0.0 7.122871383308633E-4 0.0 0.0280498675074694 8.54744565997036E-5 44-45 0.0 7.906387235472583E-4 0.0 0.03380514758518278 8.54744565997036E-5 46-47 0.0 8.404988232304188E-4 0.0 0.040856790254658326 8.54744565997036E-5 48-49 0.0 8.618674373803447E-4 0.0 0.04730298885655264 9.972019936632087E-5 50-51 0.0 9.615876367466656E-4 0.0 0.05467516073827707 9.972019936632087E-5 52-53 0.0 9.687105081299742E-4 0.0 0.0740992310005597 1.0684307074962951E-4 54-55 0.0 9.972019936632086E-4 0.0 0.09871587450127435 1.1396594213293814E-4 56-57 0.0 0.001011447736429826 0.0 0.1373859432412569 1.1396594213293814E-4 58-59 0.0 0.0010256934791964432 0.0 0.1662264494722736 1.1396594213293814E-4 60-61 0.0 0.0010969221930295296 0.0 0.1772811458591686 1.1396594213293814E-4 62-63 0.0 0.0011254136785627642 0.0 0.18580722290498902 1.1396594213293814E-4 64-65 0.0 0.0013248540772954058 0.0 0.1896891878088922 1.1396594213293814E-4 66-67 0.0 0.0013390998200620231 0.0 0.19369224152631168 1.1396594213293814E-4 68-69 0.0 0.0013462226914453318 0.0 0.1976668037581979 1.1396594213293814E-4 70-71 0.0 0.0013533455628286404 0.0 0.20141343410581825 1.1396594213293814E-4 72-73 0.0 0.0013533455628286404 0.0 0.2042768284019083 1.1396594213293814E-4 74-75 0.0 0.001381837048361875 0.0 0.20670572754361655 1.1396594213293814E-4 76-77 0.0 0.0014103285338951095 0.0 0.20893518628659213 1.1396594213293814E-4 78-79 0.0 0.001438820019428344 0.0 0.21051646373368665 1.1396594213293814E-4 80-81 0.0 0.001438820019428344 0.0 0.21117889077233437 1.282116848995554E-4 82-83 0.0 0.001438820019428344 0.0 0.2116062630553329 1.4245742766617268E-4 84-85 0.0 0.001438820019428344 0.0 0.21179858058268222 1.4245742766617268E-4 86-87 0.0 0.0014886801191115043 0.0 0.21192679226758177 1.4245742766617268E-4 88 0.0 0.0015812774470945166 0.0 0.2119624066244983 1.5670317043278993E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6440 0.0 45.512947 1 GTATCAA 11855 0.0 37.214626 1 TCAACGC 13835 0.0 31.97989 4 ATCAACG 14055 0.0 31.603025 3 CAACGCA 14075 0.0 31.37159 5 AACGCAG 14825 0.0 29.900072 6 TATCAAC 15160 0.0 29.647377 2 ACGCAGA 16915 0.0 26.205648 7 CGCAGAG 17785 0.0 24.92373 8 CTTATAC 5920 0.0 22.805822 1 GTACATG 17565 0.0 20.356392 1 GCAGAGT 21875 0.0 20.303516 9 TACATGG 17710 0.0 20.214315 2 TATACCG 500 0.0 20.031101 5 TATACAC 8435 0.0 19.721395 3 ACATGGG 17690 0.0 19.668821 3 AGAGTAC 19155 0.0 19.01522 10-11 TATGCCG 4055 0.0 17.972233 42-43 CTCGTAT 4030 0.0 17.91202 38-39 GAGTACT 12380 0.0 17.60352 12-13 >>END_MODULE