##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138994_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11083133 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.665505593048465 18.0 18.0 25.0 18.0 33.0 2 30.49826244979646 32.0 27.0 32.0 27.0 33.0 3 31.50922144487484 33.0 31.0 33.0 29.0 33.0 4 32.44691243892859 33.0 33.0 33.0 31.0 34.0 5 32.86394469866959 33.0 33.0 34.0 32.0 34.0 6 37.13777268575591 38.0 38.0 38.0 36.0 38.0 7 37.260435023201474 38.0 38.0 38.0 36.0 38.0 8 37.31826406847234 38.0 38.0 38.0 37.0 38.0 9 37.405353793011415 38.0 38.0 38.0 37.0 38.0 10-11 37.43027183739471 38.0 38.0 38.0 37.0 38.0 12-13 37.45548167652595 38.0 38.0 38.0 37.0 38.0 14-15 37.44268709939689 38.0 38.0 38.0 37.0 38.0 16-17 37.3850556967962 38.0 38.0 38.0 37.0 38.0 18-19 37.41324943948611 38.0 38.0 38.0 37.0 38.0 20-21 37.43737572137168 38.0 38.0 38.0 37.0 38.0 22-23 37.44218288019556 38.0 38.0 38.0 37.0 38.0 24-25 37.44395734533455 38.0 38.0 38.0 37.0 38.0 26-27 37.41353257089233 38.0 38.0 38.0 37.0 38.0 28-29 37.38675363685478 38.0 38.0 38.0 37.0 38.0 30-31 37.29218232518387 38.0 38.0 38.0 37.0 38.0 32-33 37.35635180525447 38.0 38.0 38.0 37.0 38.0 34-35 37.365847897815115 38.0 38.0 38.0 37.0 38.0 36-37 37.34404951554454 38.0 38.0 38.0 37.0 38.0 38-39 37.32289158765491 38.0 38.0 38.0 37.0 38.0 40-41 37.31341621054587 38.0 38.0 38.0 37.0 38.0 42-43 37.29216426008885 38.0 38.0 38.0 37.0 38.0 44-45 37.25820572521437 38.0 38.0 38.0 37.0 38.0 46-47 37.23112395055381 38.0 38.0 38.0 37.0 38.0 48-49 37.19986438284326 38.0 38.0 38.0 37.0 38.0 50-51 37.15253045806376 38.0 38.0 38.0 36.5 38.0 52-53 37.12647015604554 38.0 38.0 38.0 36.0 38.0 54-55 37.105819142050464 38.0 38.0 38.0 36.0 38.0 56-57 37.093067555273706 38.0 38.0 38.0 36.0 38.0 58-59 37.077715962477285 38.0 38.0 38.0 36.0 38.0 60-61 37.07209746117415 38.0 38.0 38.0 36.0 38.0 62-63 37.07588679443516 38.0 38.0 38.0 36.0 38.0 64-65 37.07698494944507 38.0 38.0 38.0 36.0 38.0 66-67 37.053466387516124 38.0 38.0 38.0 36.0 38.0 68-69 37.048624997351055 38.0 38.0 38.0 36.0 38.0 70-71 37.026745179224676 38.0 38.0 38.0 36.0 38.0 72-73 37.0134114817036 38.0 38.0 38.0 36.0 38.0 74-75 36.99860812642873 38.0 38.0 38.0 36.0 38.0 76-77 36.99644347521257 38.0 38.0 38.0 36.0 38.0 78-79 36.974130339752335 38.0 38.0 38.0 36.0 38.0 80-81 36.96581431952333 38.0 38.0 38.0 36.0 38.0 82-83 36.91378660536766 38.0 38.0 38.0 35.5 38.0 84-85 36.89574726943883 38.0 38.0 38.0 35.0 38.0 86-87 36.8801772571765 38.0 38.0 38.0 35.0 38.0 88-89 36.88094847574139 38.0 38.0 38.0 35.0 38.0 90-91 36.86617364756745 38.0 38.0 38.0 35.0 38.0 92-93 36.84472213741176 38.0 38.0 38.0 35.0 38.0 94-95 36.81514530481049 38.0 38.0 38.0 35.0 38.0 96-97 36.779912557403 38.0 38.0 38.0 35.0 38.0 98-99 36.777854374411774 38.0 38.0 38.0 35.0 38.0 100 35.09048637415522 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 15.0 19 41.0 20 157.0 21 448.0 22 1121.0 23 2653.0 24 5551.0 25 10444.0 26 18096.0 27 29031.0 28 44171.0 29 63518.0 30 87394.0 31 115736.0 32 151327.0 33 204883.0 34 305693.0 35 552027.0 36 1769979.0 37 7720845.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.48390766401522 17.651687478621795 19.67812711441792 23.18627774294507 2 14.205468130992383 21.006618809264005 42.25817317327208 22.529739886471535 3 18.319007811238933 25.751409822475285 30.474731287624174 25.4548510786616 4 12.426003682277472 18.13639404790209 38.882007865330245 30.555594404490193 5 13.311538907129108 37.385468281205846 35.96047841388164 13.342514397783406 6 29.933819254898413 37.95909514033622 18.771009966225254 13.336075638540112 7 26.270883873720546 32.465278545335515 23.492220115016213 17.77161746592773 8 23.79458949017394 37.5076343485186 21.255424797302354 17.442351364005106 9 25.098733434838998 17.190900580837987 21.64322788022331 36.0671381040997 10-11 24.04086527584359 26.927719645985377 29.121518917786688 19.909896160384346 12-13 24.727199167491605 24.3935930923494 29.337552297380938 21.54165544277806 14-15 21.901997386479074 25.802586687356367 26.814033540876935 25.481382385287628 16-17 21.60084607845092 28.941780270975727 27.55667102433942 21.900702626233937 18-19 21.611637250947002 28.08496478387474 29.25440847818031 21.048989486997947 20-21 22.253379531988905 27.27086282950389 29.14676626779927 21.32899137070794 22-23 22.084158537788085 27.222475722544342 29.000856928338255 21.69250881132932 24-25 21.914328531746847 27.359563577725986 29.02907459013786 21.697033300389304 26-27 21.89436263734826 27.408823254303115 29.035201880737738 21.661612227610885 28-29 21.843365201986778 27.4125406824391 29.04075896232255 21.703335153251572 30-31 21.961540865743334 27.344551408862667 29.04233453185031 21.65157319354369 32-33 21.828312129760764 27.47335055529892 28.990278582211364 21.708058732728954 34-35 21.992059224737304 27.395905830122057 29.01633002772907 21.595704917411567 36-37 21.907060278473047 27.431432785618938 28.929989420872577 21.73151751503545 38-39 21.78815589899413 27.488645963969937 29.048147507799083 21.67505062923685 40-41 21.950967816805544 27.329131529604005 28.951241136949367 21.768659516641083 42-43 21.92557084489446 27.45732822009266 28.798234339270145 21.818866595742737 44-45 21.931413367053878 27.496802379511426 28.767500581459387 21.804283671975313 46-47 21.99024745358408 27.514738349171225 28.514992928835987 21.980021268408713 48-49 21.91596180523592 27.632897700072494 28.45804255504997 21.993097939641608 50-51 21.88280171856324 27.62663365600216 28.510057403877997 21.980507221556607 52-53 21.994472147578197 27.660644809980905 28.387837771363923 21.957045271076975 54-55 22.004918022409438 27.571387383751343 28.386257351952427 22.03743724188679 56-57 22.043824905614766 27.646395757709826 28.3106220063638 21.999157330311604 58-59 21.91155231884844 27.743452404211506 28.447887220443747 21.89710805649631 60-61 22.05445912746103 27.75153765252261 28.37047525074361 21.823527969272742 62-63 21.98944939147294 27.891517647092456 28.299147625418108 21.819885336016494 64-65 21.94141945677957 27.816740116448983 28.29180269451177 21.95003773225967 66-67 21.985503452207105 27.825103518176924 28.14485499449184 22.044538035124127 68-69 21.859752708290156 27.80359168281076 28.24611432731527 22.09054128158381 70-71 21.939199007639907 27.623405900954783 28.266930123176575 22.170464968228735 72-73 22.052104525882164 27.570876033480673 28.223552816289892 22.153466624347278 74-75 21.96038759043329 27.685614534749973 28.211536039035522 22.14246183578121 76-77 22.073790608163417 27.6125776719687 28.127625287357645 22.18600643251024 78-79 22.04903590171762 27.5741005618708 28.094650987840787 22.28221254857079 80-81 22.101278889839094 27.672827081388395 28.01968598045433 22.20620804831818 82-83 22.062440641296856 27.705899697934917 28.09672425675189 22.134935404016336 84-85 22.18495139717424 27.68594257770685 28.027965363919517 22.101140661199395 86-87 22.097376114071896 27.685080946982772 28.096422187712527 22.12112075123281 88-89 22.12574376737386 27.686363038360472 28.022411829181326 22.165481365084343 90-91 22.219320547528625 27.72351874239224 27.957549966717988 22.099610743361147 92-93 22.24239150364103 27.67040672889653 28.016586513939817 22.07061525352262 94-95 22.08555492338601 27.812690420489172 28.00466454001991 22.097090116104912 96-97 22.232963555196772 27.877926262260644 28.04479767243312 21.84431251010946 98-99 23.301670096097137 29.772120322035722 28.251396763613574 18.674812818253564 100 22.167797749069265 30.65798067251606 22.217840818817137 24.95638075959754 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2425.0 1 2381.5 2 3066.5 3 3981.5 4 4603.0 5 5683.0 6 7037.0 7 10383.0 8 14017.0 9 15230.5 10 14833.0 11 14308.5 12 15012.5 13 17274.5 14 22191.0 15 27865.5 16 31559.5 17 32908.0 18 32545.5 19 31340.0 20 30290.5 21 30798.5 22 34615.5 23 42396.0 24 53607.0 25 69063.5 26 88990.0 27 110502.0 28 133115.5 29 158832.5 30 185187.5 31 212042.5 32 240556.5 33 269427.5 34 295058.5 35 316274.0 36 339814.0 37 365386.0 38 385558.0 39 398689.5 40 411332.0 41 424269.5 42 435509.0 43 451385.5 44 462443.0 45 463992.0 46 461906.5 47 457831.5 48 454687.5 49 448711.5 50 438603.0 51 422576.0 52 402358.5 53 380149.5 54 356007.5 55 328268.5 56 298750.0 57 269613.5 58 239116.5 59 205210.0 60 168822.0 61 135548.0 62 106589.5 63 81351.5 64 60270.5 65 44296.0 66 32425.5 67 24212.0 68 17858.5 69 12838.0 70 9541.5 71 7032.0 72 4899.0 73 3231.0 74 2105.0 75 1358.5 76 872.5 77 525.0 78 309.5 79 188.5 80 126.0 81 76.5 82 49.0 83 36.0 84 28.0 85 18.5 86 11.5 87 10.0 88 6.5 89 3.5 90 3.0 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005648222393433337 3 0.0 4 0.0028692247941083087 5 0.0015970213476640585 6 0.0 7 0.0 8 0.0 9 7.218175582662411E-5 10-11 2.8421566356733247E-4 12-13 1.3534079217492022E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 5.05293718666714E-4 24-25 0.0012678139134320418 26-27 0.0 28-29 0.0020038708104488504 30-31 0.0028724559118665487 32-33 5.066322687481533E-4 34-35 2.7196912171379712E-5 36-37 9.639617445415893E-4 38-39 0.001964149700181684 40-41 0.0014918999244547782 42-43 0.0 44-45 0.0 46-47 0.0013133090930436961 48-49 4.565082904493995E-4 50-51 0.0015680767245255395 52-53 0.002306952411003591 54-55 0.0017072178870397225 56-57 0.0016797120278531006 58-59 0.0017398909661847817 60-61 7.341971048062941E-4 62-63 5.963934755736701E-4 64-65 0.002839581562835199 66-67 0.002246646230025051 68-69 1.009241676493737E-4 70-71 0.002769148791149475 72-73 0.009342747234053744 74-75 0.011560165770602825 76-77 0.004514735836803938 78-79 0.004321896311232545 80-81 2.761565529374321E-4 82-83 4.8215529847154085E-5 84-85 5.402261873023616E-5 86-87 0.001852461469073864 88-89 0.0041890953230839766 90-91 5.105342924496917E-4 92-93 9.523116497012346E-4 94-95 0.002257203534135819 96-97 0.0024049752106749677 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 74.0 20-21 277.0 22-23 568.0 24-25 709.0 26-27 1977.0 28-29 5026.0 30-31 16422.0 32-33 20947.0 34-35 29845.0 36-37 47720.0 38-39 53909.0 40-41 54452.0 42-43 61185.0 44-45 72790.0 46-47 74926.0 48-49 71187.0 50-51 65824.0 52-53 62365.0 54-55 67448.0 56-57 69326.0 58-59 72860.0 60-61 71489.0 62-63 71122.0 64-65 77219.0 66-67 83183.0 68-69 85770.0 70-71 89675.0 72-73 77781.0 74-75 77270.0 76-77 80986.0 78-79 82867.0 80-81 83028.0 82-83 78345.0 84-85 77713.0 86-87 80942.0 88-89 84374.0 90-91 84809.0 92-93 85281.0 94-95 101741.0 96-97 342878.0 98-99 773407.0 100-101 7643416.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.88824321610653 #Duplication Level Percentage of deduplicated Percentage of total 1 89.63050270534575 76.08575913233284 2 7.156063789856697 12.149313669266567 3 1.7953771850127986 4.572192454380454 4 0.6455100391019319 2.1918485279089293 5 0.30862987449687607 1.3099523925023626 6 0.15862183375093675 0.8079077281700601 7 0.09358690308596966 0.5561099453702789 8 0.056743470422048706 0.38534828144902544 9 0.03603683467563507 0.27531932280155386 >10 0.11691101442615712 1.5123118525883024 >50 0.0016999403971246644 0.09609292024449477 >100 2.9895961313017387E-4 0.0426013592365888 >500 0.0 0.0 >1k 1.744981494282829E-5 0.015242413748562007 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.6090877913312056E-5 0.0 0.0 0.0 3 0.0 3.6090877913312056E-5 0.0 0.0 0.0 4 0.0 8.120447530495213E-5 0.0 2.7068158434984044E-5 0.0 5 0.0 8.120447530495213E-5 0.0 2.7068158434984044E-5 0.0 6 0.0 8.120447530495213E-5 0.0 2.7068158434984044E-5 1.8045438956656028E-5 7 0.0 8.120447530495213E-5 0.0 2.7068158434984044E-5 1.8045438956656028E-5 8 0.0 8.120447530495213E-5 0.0 3.6090877913312056E-5 1.8045438956656028E-5 9 0.0 1.0827263373993618E-4 0.0 6.31590363482961E-5 1.8045438956656028E-5 10-11 2.2556798695820038E-5 1.0827263373993618E-4 0.0 8.571583504411613E-5 1.8045438956656028E-5 12-13 4.511359739164007E-5 1.0827263373993618E-4 0.0 1.308294324357562E-4 1.8045438956656028E-5 14-15 4.511359739164007E-5 1.4887487139241223E-4 0.0 1.6240895060990425E-4 2.2556798695820038E-5 16-17 4.511359739164007E-5 1.7143167008823226E-4 0.0 1.7143167008823226E-4 4.060223765247606E-5 18-19 5.413631686996809E-5 2.030111882623803E-4 0.0 1.9849982852321633E-4 4.511359739164007E-5 20-21 6.76703960874601E-5 2.3007934669736437E-4 0.0 2.1203390774070835E-4 5.8647676609132094E-5 22-23 7.218175582662411E-5 2.526361453931844E-4 0.0 2.706815843498404E-4 6.76703960874601E-5 24-25 7.218175582662411E-5 2.8421566356733247E-4 0.0 3.157951817414805E-4 8.120447530495213E-5 26-27 8.120447530495213E-5 2.8872702330649645E-4 0.0 3.6090877913312055E-4 8.120447530495213E-5 28-29 8.120447530495213E-5 2.9774974278482446E-4 0.0 5.594086076563369E-4 9.022719478328015E-5 30-31 9.022719478328014E-5 3.428633401764645E-4 0.0 0.0014030328788800063 1.0376127400077217E-4 32-33 9.022719478328014E-5 3.473746999156285E-4 0.0 0.0032391562927197573 1.0827263373993618E-4 34-35 9.022719478328014E-5 4.1053373626392465E-4 0.0 0.005706870070042469 1.1729535321826419E-4 36-37 9.924991426160816E-5 4.6015869339472874E-4 0.0 0.009906945987204159 1.1729535321826419E-4 38-39 1.0376127400077217E-4 4.736927726122208E-4 0.0 0.019822914693886647 1.1729535321826419E-4 40-41 1.263180726965922E-4 5.278290894821889E-4 0.0 0.030835143817185988 1.1729535321826419E-4 42-43 1.263180726965922E-4 5.41363168699681E-4 0.0 0.0378277514128902 1.218067129574282E-4 44-45 1.263180726965922E-4 5.77454046612993E-4 0.0 0.04611963061347364 1.353407921749202E-4 46-47 1.263180726965922E-4 6.09033564787141E-4 0.0 0.05531829312162906 1.4436351165324823E-4 48-49 1.308294324357562E-4 6.13544924526305E-4 0.0 0.06492748936604839 1.4436351165324823E-4 50-51 1.4436351165324823E-4 6.36101723222125E-4 0.0 0.07453217425072856 1.4436351165324823E-4 52-53 1.5338623113157624E-4 6.40613082961289E-4 0.0 0.09778823370611903 1.5338623113157624E-4 54-55 1.6240895060990425E-4 6.451244427004531E-4 0.0 0.12766696925860224 1.6240895060990425E-4 56-57 1.6240895060990425E-4 6.49635802439617E-4 0.0 0.17110685218701244 1.6692031034906826E-4 58-59 1.6240895060990425E-4 6.94749399831257E-4 0.0 0.20235704110020153 1.7143167008823226E-4 60-61 1.6240895060990425E-4 7.218175582662412E-4 0.0 0.21628360861500084 1.7594302982739627E-4 62-63 1.6692031034906826E-4 7.398629972228971E-4 0.0 0.2267274064111655 1.894771090448883E-4 64-65 1.7143167008823226E-4 8.481356309628334E-4 0.0 0.23138764102172193 1.894771090448883E-4 66-67 1.8045438956656028E-4 8.706924296586534E-4 0.0 0.23616968234523578 1.894771090448883E-4 68-69 1.8045438956656028E-4 9.022719478328015E-4 0.0 0.2408434510350097 1.894771090448883E-4 70-71 1.8045438956656028E-4 9.203173867894575E-4 0.0 0.2448630725626048 1.894771090448883E-4 72-73 1.9849982852321633E-4 9.248287465286214E-4 0.0 0.24839546723837025 1.9849982852321633E-4 74-75 1.9849982852321633E-4 9.473855452244415E-4 0.0 0.2510661922039553 1.9849982852321633E-4 76-77 1.9849982852321633E-4 9.789650633985894E-4 0.0 0.25325871303718905 1.9849982852321633E-4 78-79 2.0301118826238033E-4 9.924991426160815E-4 0.0 0.255072279652333 1.9849982852321633E-4 80-81 2.0752254800154434E-4 9.970105023552455E-4 0.0 0.25560010874181516 2.0301118826238033E-4 82-83 2.1203390774070835E-4 0.0010331013802685578 0.0 0.2560602674352099 2.1654526747987235E-4 84-85 2.1654526747987235E-4 0.0010691922581818696 0.0 0.25622718774555897 2.1654526747987235E-4 86-87 2.1654526747987235E-4 0.0010917490568776898 0.0 0.25633997173903805 2.1654526747987235E-4 88 2.1654526747987235E-4 0.0011188172153126738 0.0 0.25635350581825556 2.1654526747987235E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12735 0.0 44.02695 1 GTATCAA 22535 0.0 32.8277 1 ATCAACG 25425 0.0 30.237318 3 TCAACGC 25495 0.0 30.205456 4 CAACGCA 26015 0.0 29.634228 5 AACGCAG 27060 0.0 28.53776 6 TATCAAC 28215 0.0 27.525457 2 ACGCAGA 30445 0.0 25.307846 7 CGCAGAG 31735 0.0 24.265442 8 TACATGG 28145 0.0 20.599144 2 GTACATG 27760 0.0 20.338108 1 GCAGAGT 37845 0.0 20.313463 9 ACATGGG 28185 0.0 20.04573 3 GAGTACT 22975 0.0 18.919373 12-13 AGAGTAC 34110 0.0 18.705072 10-11 CATGGGG 21720 0.0 18.30657 4 CAGAGTA 37440 0.0 18.11264 10-11 GTGGTAT 6845 0.0 16.977758 1 GTACTTT 26335 0.0 16.33293 14-15 TATGCCG 4510 0.0 15.899203 42-43 >>END_MODULE