##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138993_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9601563 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.678927899551354 18.0 18.0 25.0 18.0 33.0 2 30.553987199792367 32.0 27.0 32.0 27.0 33.0 3 31.564861158542623 33.0 31.0 33.0 29.0 33.0 4 32.5068587270635 33.0 33.0 33.0 31.0 34.0 5 32.902573987172715 33.0 33.0 34.0 32.0 34.0 6 37.18404638911394 38.0 38.0 38.0 36.0 38.0 7 37.298235610181386 38.0 38.0 38.0 36.0 38.0 8 37.36665238774145 38.0 38.0 38.0 37.0 38.0 9 37.44626015576839 38.0 38.0 38.0 37.0 38.0 10-11 37.464927012404125 38.0 38.0 38.0 37.0 38.0 12-13 37.488408033150435 38.0 38.0 38.0 37.0 38.0 14-15 37.47849240795483 38.0 38.0 38.0 37.0 38.0 16-17 37.421834497154265 38.0 38.0 38.0 37.0 38.0 18-19 37.45204004806301 38.0 38.0 38.0 37.0 38.0 20-21 37.47485800248643 38.0 38.0 38.0 37.0 38.0 22-23 37.48060087410697 38.0 38.0 38.0 37.0 38.0 24-25 37.481923552068736 38.0 38.0 38.0 37.0 38.0 26-27 37.451013179939956 38.0 38.0 38.0 37.0 38.0 28-29 37.42627123445021 38.0 38.0 38.0 37.0 38.0 30-31 37.33026072171166 38.0 38.0 38.0 37.0 38.0 32-33 37.392377662533576 38.0 38.0 38.0 37.0 38.0 34-35 37.39795310832897 38.0 38.0 38.0 37.0 38.0 36-37 37.37547664711066 38.0 38.0 38.0 37.0 38.0 38-39 37.347723274154674 38.0 38.0 38.0 37.0 38.0 40-41 37.34831371967127 38.0 38.0 38.0 37.0 38.0 42-43 37.33007682729819 38.0 38.0 38.0 37.0 38.0 44-45 37.29527567383394 38.0 38.0 38.0 37.0 38.0 46-47 37.26601894718213 38.0 38.0 38.0 37.0 38.0 48-49 37.23617265383511 38.0 38.0 38.0 37.0 38.0 50-51 37.190353829296996 38.0 38.0 38.0 37.0 38.0 52-53 37.16898626407681 38.0 38.0 38.0 37.0 38.0 54-55 37.151927323992766 38.0 38.0 38.0 36.5 38.0 56-57 37.143461805992914 38.0 38.0 38.0 36.0 38.0 58-59 37.130678031980004 38.0 38.0 38.0 36.0 38.0 60-61 37.1288380594345 38.0 38.0 38.0 36.0 38.0 62-63 37.13686904647062 38.0 38.0 38.0 36.0 38.0 64-65 37.13990987220556 38.0 38.0 38.0 36.0 38.0 66-67 37.12028857742288 38.0 38.0 38.0 36.0 38.0 68-69 37.117639766067406 38.0 38.0 38.0 36.0 38.0 70-71 37.0998366097443 38.0 38.0 38.0 36.0 38.0 72-73 37.088728417593174 38.0 38.0 38.0 36.0 38.0 74-75 37.076743235030975 38.0 38.0 38.0 36.0 38.0 76-77 37.078737929995754 38.0 38.0 38.0 36.0 38.0 78-79 37.06275996963542 38.0 38.0 38.0 36.0 38.0 80-81 37.05802141439772 38.0 38.0 38.0 36.0 38.0 82-83 37.01035393846661 38.0 38.0 38.0 36.0 38.0 84-85 36.99688479157868 38.0 38.0 38.0 36.0 38.0 86-87 36.98841586483748 38.0 38.0 38.0 36.0 38.0 88-89 36.991054447839645 38.0 38.0 38.0 36.0 38.0 90-91 36.98059362786918 38.0 38.0 38.0 36.0 38.0 92-93 36.96309361279508 38.0 38.0 38.0 36.0 38.0 94-95 36.93520293622421 38.0 38.0 38.0 35.5 38.0 96-97 36.9016474769479 38.0 38.0 38.0 35.0 38.0 98-99 36.907266467868006 38.0 38.0 38.0 35.0 38.0 100 35.362376812142756 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 8.0 19 34.0 20 145.0 21 350.0 22 858.0 23 1964.0 24 4138.0 25 8032.0 26 13987.0 27 22678.0 28 35156.0 29 51452.0 30 71372.0 31 94119.0 32 122315.0 33 163374.0 34 243449.0 35 444505.0 36 1485745.0 37 6837880.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.709461886569926 17.723645618947664 19.201457096099876 23.365435398382534 2 14.299323056643034 20.82617649022477 42.29388317886426 22.580617274267933 3 18.3714880587671 25.745277097072634 30.48415138243638 25.399083461723887 4 12.399304924851561 18.103626772474957 38.762500437442405 30.734567865231078 5 13.300784028719043 37.41486948720368 35.867527704715776 13.4168187793615 6 29.883301291675117 37.83657931526357 18.76537184622962 13.514747546831698 7 26.309560224725914 32.53977503454386 23.15668813504635 17.993976605683887 8 23.954964415689403 37.1760826857044 21.288294416232024 17.580658482374172 9 25.218256472810424 17.069580863419105 21.503386745553946 36.208775918216524 10-11 24.149709317463657 26.850531268942273 29.016584839515332 19.983174574078742 12-13 24.875650441042822 24.262974086924608 29.140841875519836 21.720533596512734 14-15 22.04561903098485 25.651958957098962 26.678182500078375 25.62423951183781 16-17 21.739616768644854 28.816579134043074 27.360232912079002 22.08357118523307 18-19 21.770174293497842 27.86579643335153 29.092544620079043 21.27148465307159 20-21 22.47545604324015 27.03116519832896 29.009127478389455 21.484251280041438 22-23 22.18874917444278 27.091707598646863 28.878754508211617 21.84078871869874 24-25 21.988524348885544 27.269061270864924 28.974149369913093 21.768265010336442 26-27 21.987685502759504 27.408707045499327 28.895124998912742 21.708482452828427 28-29 21.90447303005692 27.382908375793313 28.947848140095818 21.76477045405395 30-31 22.276552322149044 27.21516205519501 28.80958998823181 21.69869563442414 32-33 21.959482130024593 27.401864867914895 28.829464898433248 21.80918810362726 34-35 22.068793716975538 27.23004166580533 28.912850354001034 21.78831426321809 36-37 21.936485081210304 27.352803336682776 28.905613792977437 21.805097789129487 38-39 21.80438748455426 27.29537700532178 29.058244903835345 21.841990606288615 40-41 22.095333563858944 27.126684923121335 28.95301620454342 21.8249653084763 42-43 22.050809015323985 27.195444106053152 28.8383370253593 21.915409853263558 44-45 21.996173741693557 27.3786826368376 28.716462308469843 21.908681312999 46-47 22.184199323389915 27.18521699950826 28.442364438489975 22.188219238611847 48-49 22.04737248809679 27.271618469481623 28.483040193825733 22.19796884859585 50-51 21.91389605601846 27.418982268636228 28.519771531863586 22.147350143481727 52-53 22.11983236452576 27.38646620820363 28.491859766427375 22.001841660843233 54-55 22.11069403498016 27.285942775862456 28.407375784385465 22.195987404771923 56-57 22.190499032130777 27.458043962810624 28.252836972207636 22.09862003285096 58-59 21.97660418679629 27.654768085095487 28.499273997345803 21.86935373076242 60-61 22.149081839793638 27.780705509051923 28.21558979307105 21.854622858083385 62-63 22.03592564113046 27.97980958323123 28.137738480571105 21.8465262950672 64-65 21.958109440537775 27.92314105960924 28.206531334674423 21.912218165178558 66-67 22.034047976435616 27.94821827944331 28.03011319135856 21.987620552762515 68-69 21.978074943007023 27.832649277036737 28.13646151536932 22.05281426458692 70-71 22.024058205958866 27.511489706645627 28.223127415390053 22.241324672005458 72-73 22.151839989662903 27.41909215825107 28.175279311119926 22.2537885409661 74-75 22.026193736259497 27.54437338488834 28.16562487946928 22.26380799938288 76-77 22.191852567443522 27.495925773227953 28.018938834090484 22.293282825238038 78-79 22.151218268873556 27.54846431639521 27.97063345051806 22.329683964213174 80-81 22.19190140191461 27.57147616215511 27.94104944482023 22.295572991110046 82-83 22.22939352851663 27.513619515698938 28.046686848166967 22.210300107617464 84-85 22.35999644535786 27.550485648888145 27.870132623295035 22.219385282458955 86-87 22.18553888859029 27.594659709666725 27.97587032066723 22.243931081075758 88-89 22.251929039184766 27.58693539798525 27.91532328257086 22.245812280259123 90-91 22.289567045229383 27.6239554095768 27.89871313878049 22.187764406413326 92-93 22.348008681716728 27.579738451747442 27.922234490405355 22.15001837613047 94-95 22.232735008979553 27.692779795167695 27.88815653695732 22.186328658895434 96-97 22.329570612468693 27.741529355795098 27.948005673526232 21.980894358209984 98-99 23.37194272802013 29.64556146204912 28.188261125419235 18.79423468451152 100 22.251070939966926 30.57355802367087 22.155652432439364 25.01971860392284 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1844.0 1 1867.5 2 2658.0 3 3631.5 4 4221.5 5 5245.0 6 6492.0 7 9359.0 8 12527.5 9 13766.0 10 13601.5 11 13240.0 12 14122.5 13 16425.0 14 20971.5 15 26195.5 16 29512.5 17 30759.0 18 30236.0 19 28427.0 20 26876.5 21 26803.0 22 29231.5 23 35022.5 24 44521.5 25 58722.0 26 76878.0 27 96422.0 28 116843.0 29 139291.0 30 160425.0 31 179884.5 32 201187.0 33 223248.0 34 245503.0 35 266266.5 36 287809.0 37 308021.5 38 321207.5 39 333029.5 40 348618.5 41 361626.0 42 371161.5 43 390496.5 44 403269.5 45 403794.0 46 401287.0 47 396467.5 48 394582.0 49 391115.0 50 384114.5 51 371737.5 52 355951.5 53 336531.0 54 315427.0 55 294095.0 56 270986.0 57 245773.0 58 218439.0 59 188770.5 60 156617.5 61 125352.0 62 97974.0 63 74800.0 64 55567.5 65 41129.0 66 30618.0 67 22770.0 68 16577.5 69 12010.5 70 8725.5 71 6132.5 72 4354.5 73 3078.0 74 2091.5 75 1316.5 76 779.5 77 430.0 78 274.5 79 185.5 80 109.0 81 57.0 82 33.0 83 25.5 84 21.5 85 14.0 86 8.0 87 6.0 88 6.5 89 4.0 90 1.0 91 0.0 92 0.0 93 0.0 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006373962239272919 3 0.0 4 0.00311407632278203 5 0.0013435312563173309 6 0.0 7 0.0 8 0.0 9 1.5622456468806172E-4 10-11 2.3954433252169465E-4 12-13 1.0414970979204115E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 4.999406841209152E-4 24-25 0.0013697014233176824 26-27 0.0 28-29 0.0020370163909487703 30-31 0.003050011746455495 32-33 6.214342598274083E-4 34-35 3.140045889677314E-5 36-37 9.818247438631883E-4 38-39 0.0021417705447361267 40-41 0.0015642690822799173 42-43 0.0 44-45 0.0 46-47 0.001361565649211521 48-49 4.5717515174677377E-4 50-51 0.0016221340631329098 52-53 0.0025256299047815467 54-55 0.0019033877027059345 56-57 0.0017765415730001883 58-59 0.0019917062874622933 60-61 9.408452077255861E-4 62-63 6.737097117310331E-4 64-65 0.0031122486255194034 66-67 0.0024657796203372395 68-69 1.171277762723605E-4 70-71 0.0028620331493215533 72-73 0.009669176130616824 74-75 0.011798565347481006 76-77 0.0048008422257287955 78-79 0.004512482378480413 80-81 3.341239696452086E-4 82-83 3.1218794863359396E-5 84-85 7.557702586894528E-5 86-87 0.0019186273301474803 88-89 0.004327708167571425 90-91 5.307923999072797E-4 92-93 0.0010849740570284586 94-95 0.002218265435265271 96-97 0.002552499077482617 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 72.0 20-21 239.0 22-23 498.0 24-25 663.0 26-27 1804.0 28-29 4702.0 30-31 14757.0 32-33 18872.0 34-35 26926.0 36-37 42647.0 38-39 49072.0 40-41 48693.0 42-43 55276.0 44-45 65892.0 46-47 68318.0 48-49 64174.0 50-51 58350.0 52-53 55705.0 54-55 60093.0 56-57 61845.0 58-59 64542.0 60-61 65240.0 62-63 64730.0 64-65 70603.0 66-67 78755.0 68-69 81866.0 70-71 92314.0 72-73 70454.0 74-75 69148.0 76-77 71355.0 78-79 74331.0 80-81 73904.0 82-83 69720.0 84-85 68286.0 86-87 70993.0 88-89 73585.0 90-91 74820.0 92-93 74587.0 94-95 88927.0 96-97 295059.0 98-99 657558.0 100-101 6552188.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.0562441866546 #Duplication Level Percentage of deduplicated Percentage of total 1 89.24486332420159 75.01588023983703 2 7.309063575802615 12.287448654068946 3 1.8905328619067858 4.767332756499952 4 0.7038593238251196 2.3665508478599135 5 0.3301217312079274 1.3874396424867348 6 0.17165158293167412 0.8657032421958356 7 0.10984841632643555 0.6463411714376514 8 0.06024540409232331 0.4051201918006406 9 0.03995088265909308 0.3022309033438601 >10 0.13721489993100974 1.7187780742010046 >50 0.0022492636113420152 0.12517902922041846 >100 3.362623561557272E-4 0.0489471590857647 >500 0.0 0.0 >1k 6.247114787272461E-5 0.06304808796217837 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.2074854896020575E-5 0.0 0.0 0.0 3 0.0 5.2074854896020575E-5 0.0 0.0 0.0 4 0.0 9.373473881283703E-5 0.0 0.0 0.0 5 0.0 9.373473881283703E-5 0.0 0.0 0.0 6 0.0 9.373473881283703E-5 0.0 0.0 0.0 7 0.0 1.0414970979204115E-4 0.0 1.0414970979204115E-5 0.0 8 0.0 1.0414970979204115E-4 0.0 1.0414970979204115E-5 0.0 9 0.0 2.4995930350089874E-4 0.0 2.082994195840823E-5 0.0 10-11 4.165988391681646E-5 2.603742744801029E-4 0.0 2.082994195840823E-5 0.0 12-13 5.2074854896020575E-5 2.603742744801029E-4 0.0 2.082994195840823E-5 5.207485489602057E-6 14-15 6.248982587522468E-5 3.541090132929399E-4 0.0 2.082994195840823E-5 2.082994195840823E-5 16-17 8.852725332323498E-5 3.853539262305523E-4 0.0 3.124491293761234E-5 3.124491293761234E-5 18-19 1.0414970979204115E-4 4.165988391681646E-4 0.0 3.64523984272144E-5 3.124491293761234E-5 20-21 1.0414970979204115E-4 4.53051237595379E-4 0.0 5.2074854896020575E-5 3.124491293761234E-5 22-23 1.1456468077124527E-4 4.947111215121954E-4 0.0 8.852725332323498E-5 3.64523984272144E-5 24-25 1.3018713724005144E-4 5.36371005429012E-4 0.0 9.373473881283703E-5 4.165988391681646E-5 26-27 1.3539462272965349E-4 5.624084328770222E-4 0.0 1.0935719528164321E-4 4.165988391681646E-5 28-29 1.3539462272965349E-4 5.624084328770222E-4 0.0 2.343368470320926E-4 4.165988391681646E-5 30-31 1.3539462272965349E-4 6.457282007106552E-4 0.0 8.748575622531457E-4 4.165988391681646E-5 32-33 1.3539462272965349E-4 6.613506571794612E-4 0.0 0.0021402765362264456 5.2074854896020575E-5 34-35 1.4060210821925553E-4 7.915377944195127E-4 0.0 0.003962896457587166 6.248982587522468E-5 36-37 1.458095937088576E-4 9.165174461699621E-4 0.0 0.007082180265858798 6.248982587522468E-5 38-39 1.458095937088576E-4 9.790072720451868E-4 0.0 0.0159505280546511 6.769731136482674E-5 40-41 1.6663953566726584E-4 0.001072742010858024 0.0 0.02520943725516356 7.29047968544288E-5 42-43 1.6663953566726584E-4 0.0010831569818372279 0.0 0.0308803889533402 7.29047968544288E-5 44-45 1.6663953566726584E-4 0.0011977216626084734 0.0 0.03776989225608372 7.29047968544288E-5 46-47 1.6663953566726584E-4 0.0012914564014213103 0.0 0.045461348324225964 7.29047968544288E-5 48-49 1.6663953566726584E-4 0.0012914564014213103 0.0 0.052730998067710436 7.29047968544288E-5 50-51 1.6663953566726584E-4 0.001452888451598974 0.0 0.06027664454214382 7.29047968544288E-5 52-53 1.7705450664646995E-4 0.0014737183935573822 0.0 0.08210642371455563 7.29047968544288E-5 54-55 1.82261992136072E-4 0.0015049633064949945 0.0 0.11021643038742754 7.29047968544288E-5 56-57 1.8746947762567407E-4 0.0015622456468806173 0.0 0.1536781042836463 7.29047968544288E-5 58-59 1.8746947762567407E-4 0.0015882830743286275 0.0 0.18489177230832105 7.29047968544288E-5 60-61 1.8746947762567407E-4 0.0016143205017766379 0.0 0.19684815899244737 7.29047968544288E-5 62-63 1.8746947762567407E-4 0.0016559803856934542 0.0 0.20573733672319808 7.29047968544288E-5 64-65 1.8746947762567407E-4 0.0018694872907671386 0.0 0.2097627230066605 7.29047968544288E-5 66-67 1.8746947762567407E-4 0.001895524718215149 0.0 0.21420991561478064 7.29047968544288E-5 68-69 1.9788444860487818E-4 0.001968429515069578 0.0 0.21815718961589897 7.29047968544288E-5 70-71 1.9788444860487818E-4 0.0020257118554552 0.0 0.2222190282977886 7.29047968544288E-5 72-73 1.9788444860487818E-4 0.002046541797413609 0.0 0.22555702649662351 7.29047968544288E-5 74-75 1.9788444860487818E-4 0.0020725792248616186 0.0 0.22811910935750773 7.29047968544288E-5 76-77 1.9788444860487818E-4 0.002145484021716048 0.0 0.23070722964583995 7.29047968544288E-5 78-79 1.9788444860487818E-4 0.002155898992695252 0.0 0.23236841751702303 7.29047968544288E-5 80-81 1.9788444860487818E-4 0.002155898992695252 0.0 0.23292561846441043 7.811228234403086E-5 82-83 1.9788444860487818E-4 0.002171521449164058 0.0 0.2333474247890682 1.0414970979204115E-4 84-85 1.9788444860487818E-4 0.002197558876612068 0.0 0.23346719695532903 1.0414970979204115E-4 86-87 1.9788444860487818E-4 0.0022183888185704765 0.0 0.23356093169414188 1.1456468077124527E-4 88 1.9788444860487818E-4 0.0023850283542377424 0.0 0.23356613917963148 1.1456468077124527E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11060 0.0 47.06745 1 GTATCAA 19900 0.0 36.231976 1 ATCAACG 24360 0.0 30.289059 3 TCAACGC 24425 0.0 30.22614 4 CAACGCA 25180 0.0 29.422005 5 TATCAAC 26360 0.0 28.467096 2 AACGCAG 26055 0.0 28.449919 6 ACGCAGA 29565 0.0 25.04308 7 CGCAGAG 30600 0.0 24.153685 8 CTTATAC 8830 0.0 24.070946 1 GTGGTAT 5785 0.0 21.282873 1 TACATGG 26595 0.0 20.775873 2 TATACAC 13050 0.0 20.623041 3 GCAGAGT 36255 0.0 20.3624 9 GTACATG 26785 0.0 19.934969 1 TGGTATC 5775 0.0 19.823605 2 ACATGGG 27180 0.0 19.740007 3 GAGTACT 21435 0.0 19.22549 12-13 AGAGTAC 32445 0.0 18.859118 10-11 TATGCCG 6640 0.0 18.57532 42-43 >>END_MODULE