##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138992_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7829887 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.142118015240833 18.0 18.0 28.0 18.0 33.0 2 30.780799518562656 32.0 28.0 33.0 27.0 33.0 3 31.654937932054448 33.0 31.0 33.0 29.0 33.0 4 32.51775842997479 33.0 33.0 33.0 31.0 34.0 5 32.89993329405648 33.0 33.0 34.0 32.0 34.0 6 37.16721939920716 38.0 38.0 38.0 36.0 38.0 7 37.286743218644155 38.0 38.0 38.0 36.0 38.0 8 37.360582087583126 38.0 38.0 38.0 37.0 38.0 9 37.441013005679395 38.0 38.0 38.0 37.0 38.0 10-11 37.4587366331085 38.0 38.0 38.0 37.0 38.0 12-13 37.48121760888759 38.0 38.0 38.0 37.0 38.0 14-15 37.47149320290318 38.0 38.0 38.0 37.0 38.0 16-17 37.41368853726752 38.0 38.0 38.0 37.0 38.0 18-19 37.44309719923161 38.0 38.0 38.0 37.0 38.0 20-21 37.46682592437837 38.0 38.0 38.0 37.0 38.0 22-23 37.472145801311065 38.0 38.0 38.0 37.0 38.0 24-25 37.47427044047896 38.0 38.0 38.0 37.0 38.0 26-27 37.44514173370103 38.0 38.0 38.0 37.0 38.0 28-29 37.4184029753252 38.0 38.0 38.0 37.0 38.0 30-31 37.320784882947294 38.0 38.0 38.0 37.0 38.0 32-33 37.38421839785218 38.0 38.0 38.0 37.0 38.0 34-35 37.39122488083517 38.0 38.0 38.0 37.0 38.0 36-37 37.3703507540329 38.0 38.0 38.0 37.0 38.0 38-39 37.34425009244404 38.0 38.0 38.0 37.0 38.0 40-41 37.33757482303504 38.0 38.0 38.0 37.0 38.0 42-43 37.315792359759094 38.0 38.0 38.0 37.0 38.0 44-45 37.276781964908054 38.0 38.0 38.0 37.0 38.0 46-47 37.24552183409597 38.0 38.0 38.0 37.0 38.0 48-49 37.21083982721905 38.0 38.0 38.0 37.0 38.0 50-51 37.164874490785174 38.0 38.0 38.0 37.0 38.0 52-53 37.14180240700432 38.0 38.0 38.0 36.5 38.0 54-55 37.12988530198401 38.0 38.0 38.0 36.0 38.0 56-57 37.121484940224384 38.0 38.0 38.0 36.0 38.0 58-59 37.11125558334877 38.0 38.0 38.0 36.0 38.0 60-61 37.11174301035831 38.0 38.0 38.0 36.0 38.0 62-63 37.121145049490764 38.0 38.0 38.0 36.0 38.0 64-65 37.12751070765796 38.0 38.0 38.0 36.0 38.0 66-67 37.108998381761026 38.0 38.0 38.0 36.0 38.0 68-69 37.110668193912005 38.0 38.0 38.0 36.0 38.0 70-71 37.092852429692584 38.0 38.0 38.0 36.0 38.0 72-73 37.08586878295358 38.0 38.0 38.0 36.0 38.0 74-75 37.07583315249222 38.0 38.0 38.0 36.0 38.0 76-77 37.07650900079055 38.0 38.0 38.0 36.0 38.0 78-79 37.05983196846568 38.0 38.0 38.0 36.0 38.0 80-81 37.05425106296593 38.0 38.0 38.0 36.0 38.0 82-83 37.00497165287233 38.0 38.0 38.0 36.0 38.0 84-85 36.99020295284194 38.0 38.0 38.0 36.0 38.0 86-87 36.98068112056792 38.0 38.0 38.0 36.0 38.0 88-89 36.983259822216354 38.0 38.0 38.0 36.0 38.0 90-91 36.96956140749597 38.0 38.0 38.0 36.0 38.0 92-93 36.95210853138976 38.0 38.0 38.0 36.0 38.0 94-95 36.91960023446911 38.0 38.0 38.0 35.0 38.0 96-97 36.88507721289977 38.0 38.0 38.0 35.0 38.0 98-99 36.88820720754647 38.0 38.0 38.0 35.0 38.0 100 35.34305700297931 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 5.0 19 38.0 20 86.0 21 248.0 22 632.0 23 1581.0 24 3343.0 25 6491.0 26 11394.0 27 19221.0 28 30007.0 29 43910.0 30 60221.0 31 78755.0 32 101597.0 33 134957.0 34 199759.0 35 363942.0 36 1200648.0 37 5573050.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.57388056813591 18.071895545874415 18.03295500944011 23.32126887654956 2 14.507193093710423 20.756508972288373 42.091288140767126 22.645009793234077 3 18.392487656590703 25.8656478695031 30.41702900693203 25.32483546697417 4 12.49534780772863 17.902210599156383 38.54149397890734 31.060947614207645 5 13.299647345692666 37.402046856073824 35.71147227426012 13.586833523973391 6 30.03372845610671 37.689381724155155 18.570740548362956 13.706149271375182 7 26.345629253653343 32.57812022063665 23.156694343098437 17.919556182611576 8 24.210630370527696 36.943955896170664 21.085681057721523 17.75973267558012 9 25.482782292182186 16.81501939686138 21.36481106020211 36.33738725075432 10-11 24.34802826715764 26.697813652957446 28.74496287547268 20.209195204412236 12-13 25.023865291516717 24.285399831198042 28.995315448738047 21.6954194285472 14-15 22.19646975748181 25.56400877815989 26.670333811969442 25.56918765238885 16-17 21.789292744582394 28.669226005432773 27.341275806406912 22.20020544357792 18-19 21.80023159976638 27.669690507666328 29.23420861629293 21.295869276274356 20-21 22.61782130798151 26.771656409396776 29.155053202104135 21.455469080517574 22-23 22.363652828137422 26.787009977754693 28.97528672586061 21.874050468247276 24-25 22.154895895501774 26.873358872887547 29.0808794062357 21.890865825374973 26-27 22.050269985995804 27.00819289433086 29.075430654840105 21.866106464833223 28-29 21.930888725046096 26.996618932190806 29.122174616946484 21.95031772581661 30-31 22.267344435576167 26.936691024519714 29.004795903921295 21.79116863598282 32-33 22.10555079560618 27.021516622358142 29.00862325182888 21.8643093302068 34-35 22.040098201616605 27.00356343283462 29.113861961100845 21.842476404447925 36-37 22.16408581070917 26.987473832011418 28.934980983816516 21.9134593734629 38-39 21.90944711230451 27.05012630978786 29.082387571922315 21.958039005985317 40-41 22.198256782218078 26.892326592169113 28.990519163730404 21.91889746188241 42-43 22.093224905495305 27.04268306853863 28.789662332333254 22.074429693632812 44-45 22.114188755817644 27.1814457129799 28.662053835753436 22.04231169544902 46-47 22.24696325342309 27.07415289004994 28.41955636226893 22.259327494258034 48-49 22.202207135391102 27.18855734018825 28.35533527204842 22.253900252372226 50-51 22.075840198468654 27.370361164519412 28.367318099910865 22.186480537101072 52-53 22.28127344528663 27.240779610113474 28.291420376946746 22.186526567653146 54-55 22.25116019724805 27.17528912255503 28.215457247376296 22.358093432820624 56-57 22.27467966513242 27.358183228048365 28.121704540168174 22.24543256665104 58-59 22.109771020262396 27.378893499921098 28.238889457962244 22.27244602185426 60-61 22.322106801674572 27.427155249505336 28.230598572063204 22.02013937675689 62-63 22.068486757450234 27.526619541483143 28.20812413807908 22.196769562987544 64-65 22.067620405592358 27.499492779799983 28.237227771207284 22.195659043400376 66-67 22.160987077046627 27.466409276099007 28.182513259758952 22.190090387095413 68-69 22.125440754646498 27.612894563818568 28.094664953078507 22.166999728456428 70-71 22.099652407079343 27.33665032044687 28.02147163624481 22.542225636228977 72-73 22.18804450036703 27.296134184476216 27.954172494415303 22.561648820741446 74-75 22.084563680844198 27.478229145808484 28.046723111690415 22.390484061656895 76-77 22.239075967785638 27.219967043185246 27.96372601797883 22.577230971050284 78-79 22.236447580095742 27.28910950865679 27.7130321993949 22.761410711852566 80-81 22.35595371846272 27.51169381299792 27.707394179378603 22.42495828916076 82-83 22.45794992277154 27.22612383836214 27.78385723926606 22.532068999600266 84-85 22.33517086200991 27.252560973081586 27.726395528047632 22.68587263686087 86-87 22.261381178003404 27.47144915651807 27.71481100589955 22.55235865957898 88-89 22.528047355737606 27.48129585440348 27.63875179124149 22.351904998617425 90-91 22.493080332424075 27.54663337249546 27.638328116666642 22.32195817841382 92-93 22.397469295297782 27.268952126870726 27.63302693035244 22.700551647479056 94-95 22.472402164342625 27.606048803782006 27.616988844648095 22.304560187227278 96-97 22.756660063111138 27.440001139897834 27.719902064326973 22.08343673266406 98-99 23.546887200363425 29.46378143233176 27.980279727009123 19.009051640295695 100 22.41532453152984 30.373031359607968 21.998391041135967 25.213253067726228 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1727.0 1 1725.0 2 2410.0 3 3256.0 4 3907.0 5 5130.5 6 6391.0 7 8865.0 8 11482.5 9 12361.5 10 12157.0 11 11816.5 12 12560.0 13 14911.5 14 20005.0 15 26162.0 16 30415.5 17 32230.5 18 31707.0 19 29558.0 20 26955.0 21 24960.0 22 25168.5 23 28658.0 24 35532.5 25 45957.5 26 59412.0 27 74595.0 28 90445.5 29 108020.0 30 124620.0 31 140026.0 32 157119.0 33 174624.0 34 192013.0 35 208039.0 36 225072.5 37 240995.5 38 252587.0 39 263502.0 40 276486.5 41 288975.5 42 295984.5 43 300990.5 44 306788.5 45 314803.5 46 325611.0 47 329069.5 48 326357.0 49 323599.5 50 317731.0 51 308691.5 52 297095.0 53 284451.0 54 272630.5 55 259627.0 56 239958.0 57 213942.0 58 188230.5 59 161295.0 60 132875.0 61 106216.0 62 82763.0 63 64006.0 64 47703.5 65 34863.0 66 25988.5 67 19697.0 68 14877.0 69 10996.0 70 8097.5 71 5824.0 72 4100.5 73 2865.5 74 1987.0 75 1306.5 76 852.5 77 509.5 78 289.0 79 175.0 80 118.0 81 82.0 82 51.0 83 30.0 84 18.5 85 14.0 86 10.0 87 6.5 88 4.0 89 2.5 90 2.0 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00641133135126982 3 0.0 4 0.003129036217253199 5 0.0015709038968250754 6 0.0 7 0.0 8 0.0 9 1.5325891676342201E-4 10-11 2.937462571298922E-4 12-13 1.9157364595427752E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 5.428147011335696E-4 24-25 0.0012900533628657628 26-27 0.0 28-29 0.00206999866600086 30-31 0.00296050475646971 32-33 5.572696757990783E-4 34-35 6.420252249142768E-6 36-37 0.0010500907458788125 38-39 0.0021818935210063907 40-41 0.0015232223051821455 42-43 0.0 44-45 0.0 46-47 0.0013287562111048143 48-49 4.620218383661461E-4 50-51 0.0017469576967785966 52-53 0.0025525878930348907 54-55 0.0019747648287414244 56-57 0.001906186317807503 58-59 0.0021939603524372374 60-61 9.398538116571947E-4 62-63 7.155220943752598E-4 64-65 0.003322447017573624 66-67 0.0026735545035455255 68-69 1.0073148325094457E-4 70-71 0.0028688648417490577 72-73 0.010283312596786547 74-75 0.012255433106414287 76-77 0.0050429380813739235 78-79 0.00458432481589871 80-81 3.343086281030014E-4 82-83 1.1502016073377341E-4 84-85 7.73543691836283E-5 86-87 0.0017794084512692218 88-89 0.004450825273597744 90-91 3.659502686313635E-4 92-93 0.0010765148170214026 94-95 0.0023778603509397255 96-97 0.0025778816763841 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 45.0 20-21 195.0 22-23 405.0 24-25 600.0 26-27 1697.0 28-29 4316.0 30-31 12966.0 32-33 16643.0 34-35 23297.0 36-37 36738.0 38-39 41559.0 40-41 42405.0 42-43 48972.0 44-45 58907.0 46-47 59831.0 48-49 55726.0 50-51 49101.0 52-53 46672.0 54-55 51045.0 56-57 53147.0 58-59 29769.0 60-61 54996.0 62-63 53611.0 64-65 58343.0 66-67 63267.0 68-69 64546.0 70-71 69173.0 72-73 57700.0 74-75 56970.0 76-77 59802.0 78-79 61343.0 80-81 60952.0 82-83 57408.0 84-85 56608.0 86-87 58781.0 88-89 61869.0 90-91 61514.0 92-93 61405.0 94-95 73114.0 96-97 264358.0 98-99 538526.0 100-101 5301565.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.28636994654316 #Duplication Level Percentage of deduplicated Percentage of total 1 90.12391868262645 75.96217951116026 2 6.722778066938042 11.33277118436892 3 1.6845372006917614 4.259505770586601 4 0.6293967059086857 2.1219825438942044 5 0.29613156624125364 1.2479927372529775 6 0.15508078389375568 0.7842717793721402 7 0.09912140758772546 0.5848208540692782 8 0.06199819363341315 0.41804821476826215 9 0.046891350753135747 0.3557071563184723 >10 0.17312699337366982 2.3601726187934786 >50 0.005735594045001909 0.33638817924102077 >100 0.0011719028247922556 0.15504140586831983 >500 8.36636420813621E-5 0.05187701795824704 >1k 2.7887840233836805E-5 0.02924102634785319 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.5543152793903668E-5 0.0 1.2771576396951834E-5 0.0 3 0.0 2.5543152793903668E-5 0.0 1.2771576396951834E-5 0.0 4 0.0 1.0217261117561467E-4 0.0 1.2771576396951834E-5 0.0 5 0.0 1.149441875725665E-4 0.0 1.2771576396951834E-5 0.0 6 5.1086305587807336E-5 1.149441875725665E-4 0.0 1.2771576396951834E-5 0.0 7 5.1086305587807336E-5 1.149441875725665E-4 0.0 1.2771576396951834E-5 0.0 8 5.1086305587807336E-5 1.2771576396951832E-4 0.0 2.5543152793903668E-5 2.5543152793903668E-5 9 5.1086305587807336E-5 2.682031043359885E-4 0.0 2.5543152793903668E-5 3.83147291908555E-5 10-11 6.385788198475916E-5 2.682031043359885E-4 0.0 5.7472093786283245E-5 3.83147291908555E-5 12-13 7.6629458381711E-5 2.682031043359885E-4 0.0 7.024367018323508E-5 3.83147291908555E-5 14-15 7.6629458381711E-5 4.150762329009346E-4 0.0 7.6629458381711E-5 3.83147291908555E-5 16-17 1.149441875725665E-4 4.470051738933142E-4 0.0 8.940103477866284E-5 3.83147291908555E-5 18-19 1.149441875725665E-4 4.789341148856937E-4 0.0 1.213299757710424E-4 4.470051738933141E-5 20-21 1.149441875725665E-4 5.36406208671977E-4 0.0 1.4048734036647016E-4 5.1086305587807336E-5 22-23 1.149441875725665E-4 5.874925142597843E-4 0.0 1.4048734036647016E-4 7.024367018323508E-5 24-25 1.149441875725665E-4 6.577361844430194E-4 0.0 1.53258916763422E-4 7.6629458381711E-5 26-27 1.149441875725665E-4 7.024367018323509E-4 0.0 2.1711679874818118E-4 7.6629458381711E-5 28-29 1.149441875725665E-4 7.088224900308268E-4 0.0 4.4700517389331413E-4 8.301524658018691E-5 30-31 1.149441875725665E-4 8.301524658018692E-4 0.0 0.001155827663924141 8.940103477866284E-5 32-33 1.149441875725665E-4 8.365382540003451E-4 0.0 0.002918305206703494 8.940103477866284E-5 34-35 1.2771576396951832E-4 9.706398061683393E-4 0.0 0.005127787923376161 8.940103477866284E-5 36-37 1.4048734036647016E-4 0.0011175129347332853 0.0 0.008671900373530295 8.940103477866284E-5 38-39 1.4048734036647016E-4 0.001149441875725665 0.0 0.018633729963152726 8.940103477866284E-5 40-41 1.4048734036647016E-4 0.0012643860632982316 0.0 0.029438483594973974 8.940103477866284E-5 42-43 1.4048734036647016E-4 0.001309086580687563 0.0 0.03527509400838097 8.940103477866284E-5 44-45 1.4048734036647016E-4 0.0014815028620464128 0.0 0.04277839514159017 8.940103477866284E-5 46-47 1.4048734036647016E-4 0.001609218626015931 0.0 0.05138005184493723 8.940103477866284E-5 48-49 1.4048734036647016E-4 0.001615604414214407 0.0 0.05996255118368886 8.940103477866284E-5 50-51 1.4687312856494607E-4 0.0017944064837717327 0.0 0.06808527377215022 8.940103477866284E-5 52-53 1.53258916763422E-4 0.0018007922719702086 0.0 0.09332829452072552 9.578682297713876E-5 54-55 1.53258916763422E-4 0.0018071780601686845 0.0 0.12396730629701297 1.0217261117561467E-4 56-57 1.53258916763422E-4 0.0018263354247641122 0.0 0.16136248198728795 1.1494418757256649E-4 58-59 1.53258916763422E-4 0.00184549278935954 0.0 0.34275079576499634 1.2771576396951832E-4 60-61 1.596447049618979E-4 0.0019093506713442991 0.0 0.5084875426682403 1.2771576396951832E-4 62-63 1.915736459542775E-4 0.0019348938241382028 0.0 0.5143177672934488 1.2771576396951832E-4 64-65 1.915736459542775E-4 0.0021903253520772392 0.0 0.5202757076826269 1.2771576396951832E-4 66-67 1.915736459542775E-4 0.002209482716672667 0.0 0.5258696581444917 1.2771576396951832E-4 68-69 1.915736459542775E-4 0.0022286400812680947 0.0 0.5314316796653642 1.2771576396951832E-4 70-71 1.9795943415275343E-4 0.0022669548104589502 6.385788198475917E-6 0.5363040360608013 1.4048734036647016E-4 72-73 2.1711679874818118E-4 0.002292497963252854 1.2771576396951834E-5 0.5401035800388946 1.53258916763422E-4 74-75 2.1711679874818118E-4 0.0023308126924437094 1.2771576396951834E-5 0.543155986797766 1.53258916763422E-4 76-77 2.1711679874818118E-4 0.002452142668214752 1.2771576396951834E-5 0.5461062209454619 1.53258916763422E-4 78-79 2.1711679874818118E-4 0.0025032289738025596 1.2771576396951834E-5 0.548187987898165 1.53258916763422E-4 80-81 2.1711679874818118E-4 0.0025032289738025596 1.2771576396951834E-5 0.5489670540583791 1.596447049618979E-4 82-83 2.235025869466571E-4 0.0025096147620010355 1.2771576396951834E-5 0.5494779171142572 1.6603049316037385E-4 84-85 2.29888375145133E-4 0.0025160005501995114 1.2771576396951834E-5 0.5497397344303947 1.6603049316037385E-4 86-87 2.3627416334360892E-4 0.0025670868557873187 1.2771576396951834E-5 0.5498482928297688 1.6603049316037385E-4 88 2.4265995154208484E-4 0.002694802619756837 1.2771576396951834E-5 0.5498546786179673 1.6603049316037385E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10015 0.0 51.777275 1 GTATCAA 18340 0.0 36.789433 1 ATCAACG 23120 0.0 29.964905 3 TCAACGC 23735 0.0 29.243378 4 CAACGCA 24005 0.0 28.86018 5 TATCAAC 24145 0.0 28.766325 2 AACGCAG 24195 0.0 28.65119 6 ACGCAGA 28100 0.0 24.684944 7 CGCAGAG 28990 0.0 23.912231 8 TGGTATC 4610 0.0 21.804226 2 TACATGG 25185 0.0 21.309052 2 GTACATG 24680 0.0 21.185717 1 ACATGGG 24995 0.0 20.899996 3 GCAGAGT 33475 0.0 20.734228 9 GTGGTAT 5065 0.0 20.61207 1 GAGTACT 19995 0.0 19.707613 12-13 ACTTCGC 1300 0.0 19.245848 6 CAGAGTA 32625 0.0 18.881102 10-11 CGAGACC 7915 0.0 18.84962 86-87 AGAGTAC 30480 0.0 18.709671 10-11 >>END_MODULE