##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138991_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7930146 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.364657346787816 18.0 18.0 28.0 18.0 33.0 2 30.898152946994923 32.0 28.0 33.0 27.0 33.0 3 31.729854406211437 33.0 31.0 33.0 29.0 33.0 4 32.56235408528418 33.0 33.0 33.0 31.0 34.0 5 32.93722927673715 33.0 33.0 34.0 32.0 34.0 6 37.184895334839986 38.0 38.0 38.0 36.0 38.0 7 37.29130169860681 38.0 38.0 38.0 36.0 38.0 8 37.358506009851524 38.0 38.0 38.0 37.0 38.0 9 37.43710468886702 38.0 38.0 38.0 37.0 38.0 10-11 37.455246977798396 38.0 38.0 38.0 37.0 38.0 12-13 37.477947820885014 38.0 38.0 38.0 37.0 38.0 14-15 37.46589930374547 38.0 38.0 38.0 37.0 38.0 16-17 37.40627978349957 38.0 38.0 38.0 37.0 38.0 18-19 37.43412088503793 38.0 38.0 38.0 37.0 38.0 20-21 37.45825448152638 38.0 38.0 38.0 37.0 38.0 22-23 37.46526141072268 38.0 38.0 38.0 37.0 38.0 24-25 37.46537534333601 38.0 38.0 38.0 37.0 38.0 26-27 37.43393437970289 38.0 38.0 38.0 37.0 38.0 28-29 37.40731188690162 38.0 38.0 38.0 37.0 38.0 30-31 37.31269391616232 38.0 38.0 38.0 37.0 38.0 32-33 37.37592029257148 38.0 38.0 38.0 37.0 38.0 34-35 37.38361894823203 38.0 38.0 38.0 37.0 38.0 36-37 37.36286058827482 38.0 38.0 38.0 37.0 38.0 38-39 37.340327038514815 38.0 38.0 38.0 37.0 38.0 40-41 37.33614793123007 38.0 38.0 38.0 37.0 38.0 42-43 37.320049043164204 38.0 38.0 38.0 37.0 38.0 44-45 37.28925275496163 38.0 38.0 38.0 37.0 38.0 46-47 37.266928992393304 38.0 38.0 38.0 37.0 38.0 48-49 37.239438013673805 38.0 38.0 38.0 37.0 38.0 50-51 37.1969206790078 38.0 38.0 38.0 37.0 38.0 52-53 37.17573434962766 38.0 38.0 38.0 37.0 38.0 54-55 37.16321922198415 38.0 38.0 38.0 36.5 38.0 56-57 37.15537000136902 38.0 38.0 38.0 36.0 38.0 58-59 37.14512760212568 38.0 38.0 38.0 36.0 38.0 60-61 37.1385102399246 38.0 38.0 38.0 36.0 38.0 62-63 37.14291958548726 38.0 38.0 38.0 36.0 38.0 64-65 37.146255308237926 38.0 38.0 38.0 36.0 38.0 66-67 37.12428414377811 38.0 38.0 38.0 36.0 38.0 68-69 37.12197807489401 38.0 38.0 38.0 36.0 38.0 70-71 37.10284724144557 38.0 38.0 38.0 36.0 38.0 72-73 37.093044186253934 38.0 38.0 38.0 36.0 38.0 74-75 37.07796163706827 38.0 38.0 38.0 36.0 38.0 76-77 37.07683927010958 38.0 38.0 38.0 36.0 38.0 78-79 37.05665833385093 38.0 38.0 38.0 36.0 38.0 80-81 37.04956610972177 38.0 38.0 38.0 36.0 38.0 82-83 36.98652336541923 38.0 38.0 38.0 36.0 38.0 84-85 36.99068476988052 38.0 38.0 38.0 36.0 38.0 86-87 36.98160942322115 38.0 38.0 38.0 36.0 38.0 88-89 36.981859957201436 38.0 38.0 38.0 36.0 38.0 90-91 36.97230214713948 38.0 38.0 38.0 36.0 38.0 92-93 36.95576102098525 38.0 38.0 38.0 36.0 38.0 94-95 36.90899061180009 38.0 38.0 38.0 35.5 38.0 96-97 36.84134777956457 38.0 38.0 38.0 35.0 38.0 98-99 36.854940615710916 38.0 38.0 38.0 35.0 38.0 100 35.28272619555191 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 5.0 19 32.0 20 89.0 21 295.0 22 748.0 23 1694.0 24 3752.0 25 7104.0 26 12200.0 27 19461.0 28 29363.0 29 42482.0 30 58348.0 31 77537.0 32 100680.0 33 137303.0 34 203043.0 35 365563.0 36 1169015.0 37 5701430.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.20255112579264 18.38764380882773 17.696332450877954 23.713472614501676 2 14.15415001868307 20.970727671209243 42.34250764757387 22.532614662533817 3 18.447554433424052 25.6870050059608 30.37739784362104 25.488042716994112 4 12.40472449960895 18.12952701283169 38.91931522952754 30.54643325803182 5 13.314663325098369 37.41660318418302 35.97417102553099 13.294562465187617 6 29.823826698777044 37.99051114569644 18.829665935532585 13.355996219993932 7 26.27179877898843 32.38681860333971 23.40210382003055 17.939278797641304 8 23.741050921382783 37.44996624274005 21.382544533228014 17.426438302649156 9 25.111883242443827 17.07362869416462 21.564733645374826 36.24975441801673 10-11 24.079452769945473 26.883426732508465 29.13862589721215 19.898494600333915 12-13 24.73076469597971 24.30959333026067 29.33001855577672 21.6296234179829 14-15 21.886892120271177 25.74796226954712 26.743700557341565 25.621445052840137 16-17 21.676605954039182 28.89392578648615 27.47059764095138 21.958870618523292 18-19 21.682721856571117 28.086456415808737 29.098537403977176 21.13228432364297 20-21 22.296034699773852 27.26514566907612 28.964825766901104 21.473993864248918 22-23 22.123414153618466 27.240198060593112 28.83957726274278 21.796810523045647 24-25 22.01255724052209 27.355396920272163 28.838938581434505 21.79310725777125 26-27 21.94654717071559 27.42569549720893 28.852357085381758 21.775400246693724 28-29 21.897302754921945 27.413504725636557 28.906063974520247 21.783128544921254 30-31 21.979221286488094 27.209102524020413 28.954689684299723 21.856986505191774 32-33 21.722019190684524 27.511125991988855 28.877261376759083 21.889593440567534 34-35 21.987909882841155 27.369131485551744 28.9023451598763 21.740613471730796 36-37 21.92302967065423 27.402160020933238 28.886967056779376 21.787843251633156 38-39 21.796284298866784 27.4307759006862 28.932860926838888 21.840078873608128 40-41 22.04553662678562 27.28335011052455 28.908118623706812 21.76299463898302 42-43 21.89686723463765 27.39074041845037 28.752887311687548 21.95950503522443 44-45 21.930486342592786 27.442406610813467 28.7165351328139 21.910571913779847 46-47 21.948516107304364 27.37359366797001 28.61138294403982 22.066507280685805 48-49 21.867048149794577 27.674388317195174 28.447356404896563 22.011207128113686 50-51 21.799569145670485 27.66276162942259 28.419264439240138 22.118404785666787 52-53 21.84658548189566 27.51843906987031 28.388946590017788 22.246028858216242 54-55 21.99294456907131 27.27817047497478 28.584692004679766 22.144192951274142 56-57 21.97169702064516 27.10738852237309 28.56763573873457 22.353278718247182 58-59 21.677451200966164 27.138171334938654 28.744900682703605 22.439476781391576 60-61 21.92828430942348 27.40926004123434 28.82839439748593 21.83406125185625 62-63 21.493986292662502 27.7376311778633 28.718681930470737 22.049700599003465 64-65 21.28160568378469 27.97440094668422 28.506870237681532 22.23712313184956 66-67 21.40729393624921 28.420592444425147 28.039355409187305 22.13275821013834 68-69 21.408833700872467 28.39737627114542 27.945458530969276 22.24833149701284 70-71 21.459502884623387 27.88956290809998 27.952715208999912 22.69821899827672 72-73 21.732692197368205 27.31751535553886 27.956428494326786 22.993363952766156 74-75 21.775964970209472 27.430175127066793 28.11091693888079 22.682942963842947 76-77 22.129551870657902 27.3068833601667 27.54220011416456 23.02136465501084 78-79 22.20544876488936 27.342711942755038 27.18418770211536 23.26765159024024 80-81 22.137703646097016 27.6715288290026 27.290189196945256 22.900578327955124 82-83 22.05620912904678 27.541464359729435 27.368415596770756 23.033910914453028 84-85 22.181562252113686 27.881446921147525 27.25268743085313 22.684303395885667 86-87 22.584481258399588 27.775853065591523 27.297557139460093 22.3421085365488 88-89 22.330747576878096 27.86276301819478 27.577900807785916 22.22858859714121 90-91 22.334039413299603 27.581747008100415 27.400052991884476 22.684160586715507 92-93 22.392633873391304 27.15808541343265 27.685256903837413 22.764023809338628 94-95 21.745090734713255 27.667210872476083 28.100504627904954 22.487193764905708 96-97 21.83802684651277 27.516180253707002 28.321966063340465 22.32382683643976 98-99 23.067426400759732 29.343797467496547 28.605801528786955 18.982974602956762 100 22.03498166220055 30.3921973939546 22.349053775300305 25.22376716854454 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1292.0 1 1258.5 2 1768.0 3 2502.0 4 2993.0 5 3793.5 6 4674.5 7 6483.0 8 8661.5 9 9660.0 10 9474.0 11 9174.5 12 9807.0 13 11493.0 14 14675.0 15 18298.5 16 20893.5 17 22003.0 18 21638.0 19 20438.5 20 19549.0 21 19737.5 22 22030.5 23 26909.5 24 34473.0 25 45378.0 26 59336.5 27 74940.5 28 90377.5 29 107374.5 30 125354.0 31 143946.5 32 163402.5 33 182540.5 34 200506.5 35 216362.0 36 234240.5 37 252482.5 38 266285.5 39 275800.5 40 285350.0 41 296937.5 42 306494.5 43 315072.0 44 329717.5 45 343171.0 46 340853.5 47 333617.5 48 330247.0 49 326036.0 50 317928.5 51 304900.0 52 290288.0 53 273663.0 54 255194.5 55 235675.0 56 214705.0 57 192427.5 58 170839.5 59 147144.0 60 119677.0 61 93899.0 62 72412.5 63 54729.0 64 40150.5 65 28687.5 66 20561.5 67 15217.5 68 11277.0 69 8198.0 70 5957.0 71 4256.0 72 2985.5 73 2025.5 74 1300.5 75 797.0 76 483.0 77 285.0 78 175.5 79 115.0 80 70.0 81 42.0 82 29.5 83 21.5 84 16.0 85 11.0 86 7.0 87 4.5 88 4.5 89 5.0 90 3.5 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006393324914825024 3 0.0 4 0.0031273068616895577 5 0.0017275848389172153 6 0.0 7 0.0 8 0.0 9 5.0440433253057384E-5 10-11 3.27862816144873E-4 12-13 1.2610108313264346E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 5.548662113527014E-4 24-25 0.0012422018728116438 26-27 0.0 28-29 0.001791331682911333 30-31 0.002619473557771511 32-33 5.184115768132962E-4 34-35 1.2670819274267423E-5 36-37 8.770833191654717E-4 38-39 0.0021431199757470255 40-41 0.0013511219530999315 42-43 0.0 44-45 0.0 46-47 0.0011538867730676308 48-49 4.7262863178999955E-4 50-51 0.0014735606220196741 52-53 0.0021321556417997064 54-55 0.0016894903562896645 56-57 0.001584346707561815 58-59 0.0016847096416198097 60-61 8.002460489851946E-4 62-63 6.984239593264748E-4 64-65 0.0029691217425809324 66-67 0.0021677767887958934 68-69 1.031382139390471E-4 70-71 0.0025182585888053484 72-73 0.009063266573573238 74-75 0.011231123101015447 76-77 0.004390204507395217 78-79 0.0041616980416842855 80-81 3.1845753068464967E-4 82-83 2.920037332677298E-5 84-85 6.62440492602527E-5 86-87 0.0017292423565817968 88-89 0.004162552465193088 90-91 4.7597274474291877E-4 92-93 0.0010903827403544782 94-95 0.0025481331575865625 96-97 0.0027563357070094787 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 36.0 20-21 186.0 22-23 368.0 24-25 475.0 26-27 1373.0 28-29 3423.0 30-31 12085.0 32-33 15264.0 34-35 22029.0 36-37 34997.0 38-39 21664.0 40-41 39615.0 42-43 43204.0 44-45 52032.0 46-47 53608.0 48-49 51050.0 50-51 26536.0 52-53 4510.0 54-55 4120.0 56-57 4129.0 58-59 28384.0 60-61 52898.0 62-63 51888.0 64-65 55969.0 66-67 61900.0 68-69 63871.0 70-71 71416.0 72-73 56480.0 74-75 55331.0 76-77 58007.0 78-79 59881.0 80-81 59846.0 82-83 56831.0 84-85 55382.0 86-87 57830.0 88-89 60152.0 90-91 61062.0 92-93 61004.0 94-95 72721.0 96-97 266409.0 98-99 608808.0 100-101 5563372.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.98069300698396 #Duplication Level Percentage of deduplicated Percentage of total 1 89.54540228445384 76.09630341722053 2 7.355247393214636 12.501080414263841 3 1.745228335213307 4.449321401455552 4 0.6402092160141512 2.176216913853618 5 0.29306072631537355 1.245225180770525 6 0.14236303448873752 0.7258865597658043 7 0.08057427361080771 0.47930803269865446 8 0.05242839074479464 0.35643207829868734 9 0.030488950266457975 0.23318749104291597 >10 0.11240304176298986 1.46875504656924 >50 0.00174373170198844 0.09714744783070817 >100 7.561142677892178E-4 0.10919431728241885 >500 7.088107595566835E-5 0.040437864106204556 >1k 2.362686917743868E-5 0.02150383484140258 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.5220216626528692E-5 0.0 1.2610108313264346E-5 0.0 3 0.0 2.5220216626528692E-5 0.0 1.2610108313264346E-5 0.0 4 0.0 5.0440433253057384E-5 0.0 1.2610108313264346E-5 0.0 5 0.0 5.0440433253057384E-5 0.0 1.2610108313264346E-5 0.0 6 8.827075819285042E-5 5.0440433253057384E-5 0.0 1.2610108313264346E-5 0.0 7 8.827075819285042E-5 5.0440433253057384E-5 0.0 3.783032493979304E-5 0.0 8 1.0088086650611477E-4 5.0440433253057384E-5 0.0 3.783032493979304E-5 0.0 9 1.0088086650611477E-4 7.566064987958608E-5 0.0 3.783032493979304E-5 1.2610108313264346E-5 10-11 1.1349097481937911E-4 7.566064987958608E-5 0.0 5.0440433253057384E-5 1.2610108313264346E-5 12-13 1.1349097481937911E-4 7.566064987958608E-5 0.0 6.305054156632172E-5 1.2610108313264346E-5 14-15 1.1349097481937911E-4 8.827075819285043E-5 0.0 9.457581234948259E-5 1.2610108313264346E-5 16-17 1.2610108313264345E-4 1.0088086650611477E-4 0.0 1.0088086650611477E-4 1.2610108313264346E-5 18-19 1.2610108313264345E-4 1.2610108313264345E-4 0.0 1.1349097481937911E-4 1.2610108313264346E-5 20-21 1.2610108313264345E-4 1.639314080724365E-4 0.0 1.2610108313264345E-4 1.2610108313264346E-5 22-23 1.387111914459078E-4 1.891516246989652E-4 0.0 1.5132129975917215E-4 1.891516246989652E-5 24-25 1.387111914459078E-4 2.080667871688617E-4 0.0 1.8915162469896517E-4 2.5220216626528692E-5 26-27 1.5132129975917215E-4 2.2698194963875821E-4 0.0 2.711173287351834E-4 3.783032493979304E-5 28-29 1.5762635391580434E-4 2.332870037953904E-4 0.0 4.854891700606773E-4 3.783032493979304E-5 30-31 1.7654151638570083E-4 2.3959205795202258E-4 0.0 0.0011538249106636876 3.783032493979304E-5 32-33 1.7654151638570083E-4 2.3959205795202258E-4 0.0 0.0029381552369905925 3.783032493979304E-5 34-35 1.8915162469896517E-4 2.7111732873518347E-4 0.0 0.0053151606540409214 3.783032493979304E-5 36-37 2.0176173301222954E-4 3.026425995183443E-4 0.0 0.011368012644407809 3.783032493979304E-5 38-39 2.0176173301222954E-4 3.27862816144873E-4 0.0 0.13879315714994403 3.783032493979304E-5 40-41 2.0176173301222954E-4 3.27862816144873E-4 0.0 0.27015265544921874 3.783032493979304E-5 42-43 2.1437184132549388E-4 3.3416787030150514E-4 0.0 0.2836013359653151 3.783032493979304E-5 44-45 2.3959205795202255E-4 3.467779786147695E-4 0.0 0.30155182514924694 3.783032493979304E-5 46-47 2.522021662652869E-4 3.5308303277140166E-4 0.0 0.32224501289131374 3.783032493979304E-5 48-49 2.522021662652869E-4 3.5938808692803387E-4 0.0 0.34290667536259734 3.783032493979304E-5 50-51 2.6481227457855126E-4 3.972184118678269E-4 0.0 0.3649617548024967 3.783032493979304E-5 52-53 2.6481227457855126E-4 4.0352346602445907E-4 0.0 0.7872049266179967 3.783032493979304E-5 54-55 2.6481227457855126E-4 4.0982852018109123E-4 0.0 1.352213439702119 3.783032493979304E-5 56-57 2.6481227457855126E-4 4.1613357433772344E-4 0.0 1.9688288210582758 3.783032493979304E-5 58-59 2.6481227457855126E-4 4.1613357433772344E-4 0.0 2.60652830351421 3.783032493979304E-5 60-61 2.6481227457855126E-4 4.3504873680761996E-4 0.0 2.774980435416952 3.783032493979304E-5 62-63 3.026425995183443E-4 4.5396389927751643E-4 0.0 2.7804973578040055 3.783032493979304E-5 64-65 3.026425995183443E-4 4.7918411590404516E-4 0.0 2.785900789216239 3.783032493979304E-5 66-67 3.026425995183443E-4 4.917942242173095E-4 0.0 2.7907872061876287 3.783032493979304E-5 68-69 3.026425995183443E-4 5.170144408438381E-4 0.0 2.795225964313898 3.783032493979304E-5 70-71 3.026425995183443E-4 5.296245491571025E-4 0.0 2.799015301862034 3.783032493979304E-5 72-73 3.4047292445813735E-4 5.296245491571025E-4 0.0 2.8020732531280004 7.566064987958608E-5 74-75 3.467779786147695E-4 5.422346574703669E-4 0.0 2.8045952747906533 7.566064987958608E-5 76-77 3.5308303277140166E-4 5.611498199402634E-4 0.0 2.806915534720294 7.566064987958608E-5 78-79 3.5308303277140166E-4 5.674548740968956E-4 0.0 2.80881335602144 7.566064987958608E-5 80-81 3.5308303277140166E-4 5.674548740968956E-4 0.0 2.809342980570597 8.196570403621825E-5 82-83 3.5308303277140166E-4 5.674548740968956E-4 0.0 2.8098726051197547 8.827075819285042E-5 84-85 3.5938808692803387E-4 5.674548740968956E-4 0.0 2.8101311123401764 8.827075819285042E-5 86-87 3.7830324939793034E-4 5.926750907234243E-4 0.0 2.810225688152526 8.827075819285042E-5 88 3.909133577111947E-4 6.55725632289746E-4 0.0 2.810238298260839 8.827075819285042E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8860 0.0 44.30081 1 GTATCAA 15095 0.0 33.50636 1 TCAACGC 16850 0.0 30.01501 4 ATCAACG 16920 0.0 29.968487 3 CAACGCA 17170 0.0 29.453575 5 ATCTCGT 9665 0.0 29.097975 94 AACGCAG 17995 0.0 28.249435 6 TATCAAC 18440 0.0 27.714046 2 ACGCAGA 20985 0.0 24.182543 7 CGCAGAG 21690 0.0 23.396524 8 TATCTCG 11040 0.0 23.147781 94 GTACATG 20015 0.0 20.75121 1 TACATGG 20315 0.0 20.639273 2 ACATGGG 20085 0.0 20.131262 3 GCAGAGT 26215 0.0 19.4585 9 GAGTACT 15120 0.0 18.639471 12-13 CGCTATC 15170 0.0 18.332247 94 CATGGGG 15715 0.0 17.96315 4 AGAGTAC 23595 0.0 17.805069 10-11 CAGAGTA 25835 0.0 17.637646 10-11 >>END_MODULE