##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138990_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7789888 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.823629556676554 25.0 18.0 32.0 18.0 33.0 2 26.84320788694266 28.0 25.0 32.0 18.0 33.0 3 29.045937759310533 31.0 27.0 33.0 18.0 33.0 4 29.694972122834116 31.0 29.0 33.0 25.0 33.0 5 31.13926015367615 32.0 32.0 33.0 28.0 33.0 6 36.09763015848238 37.0 36.0 38.0 33.0 38.0 7 36.209633565976816 38.0 37.0 38.0 33.0 38.0 8 36.860002865253 38.0 38.0 38.0 35.0 38.0 9 37.00795531334982 38.0 38.0 38.0 36.0 38.0 10-11 37.07438714138124 38.0 38.0 38.0 36.0 38.0 12-13 37.12054114256841 38.0 38.0 38.0 36.0 38.0 14-15 37.14174632549274 38.0 38.0 38.0 36.0 38.0 16-17 37.11927251072159 38.0 38.0 38.0 36.0 38.0 18-19 37.15519696817207 38.0 38.0 38.0 36.0 38.0 20-21 37.121730970069066 38.0 38.0 38.0 36.0 38.0 22-23 37.162126065572956 38.0 38.0 38.0 36.0 38.0 24-25 37.16811642302762 38.0 38.0 38.0 36.0 38.0 26-27 37.09820539915117 38.0 38.0 38.0 36.0 38.0 28-29 37.08322425319558 38.0 38.0 38.0 36.0 38.0 30-31 36.954412045477596 38.0 38.0 38.0 36.0 38.0 32-33 37.05117363366482 38.0 38.0 38.0 36.0 38.0 34-35 37.07028489778696 38.0 38.0 38.0 36.0 38.0 36-37 36.99471464136606 38.0 38.0 38.0 36.0 38.0 38-39 37.03177524992876 38.0 38.0 38.0 36.0 38.0 40-41 36.948225996104924 38.0 38.0 38.0 36.0 38.0 42-43 36.930521991813194 38.0 38.0 38.0 35.5 38.0 44-45 36.927479712993325 38.0 38.0 38.0 36.0 38.0 46-47 36.888088425158664 38.0 38.0 38.0 35.0 38.0 48-49 36.85500213726401 38.0 38.0 38.0 35.0 38.0 50-51 36.87228800003016 38.0 38.0 38.0 35.0 38.0 52-53 36.78338088749864 38.0 38.0 38.0 35.0 38.0 54-55 36.76695845377678 38.0 38.0 38.0 35.0 38.0 56-57 36.77163888471556 38.0 38.0 38.0 35.0 38.0 58-59 36.79217788597499 38.0 38.0 38.0 35.0 38.0 60-61 36.787298040586734 38.0 38.0 38.0 35.0 38.0 62-63 36.79286667259596 38.0 38.0 38.0 35.0 38.0 64-65 36.74638683149688 38.0 38.0 38.0 35.0 38.0 66-67 36.75026549919611 38.0 38.0 38.0 35.0 38.0 68-69 36.763255752873064 38.0 38.0 38.0 35.0 38.0 70-71 36.679338877168504 38.0 38.0 38.0 34.5 38.0 72-73 36.63134536761455 38.0 38.0 38.0 34.0 38.0 74-75 36.682177200008326 38.0 38.0 38.0 34.0 38.0 76-77 36.65548319312147 38.0 38.0 38.0 34.0 38.0 78-79 36.67466671039864 38.0 38.0 38.0 34.0 38.0 80-81 36.698520134580725 38.0 38.0 38.0 34.0 38.0 82-83 36.57030639922161 38.0 38.0 38.0 34.0 38.0 84-85 36.58521626291852 38.0 38.0 38.0 34.0 38.0 86-87 36.582705887456385 38.0 38.0 38.0 34.0 38.0 88-89 36.52900098572955 38.0 38.0 38.0 34.0 38.0 90-91 36.5247808572764 38.0 38.0 38.0 34.0 38.0 92-93 36.572376480946346 38.0 38.0 38.0 34.0 38.0 94-95 36.46958653667882 38.0 38.0 38.0 34.0 38.0 96-97 36.425956021226156 38.0 38.0 38.0 34.0 38.0 98-99 36.49404673528389 38.0 38.0 38.0 34.0 38.0 100 34.87083177195132 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 23.0 19 41.0 20 108.0 21 285.0 22 896.0 23 2528.0 24 5865.0 25 11719.0 26 20167.0 27 31821.0 28 47832.0 29 67413.0 30 91413.0 31 120683.0 32 160729.0 33 221423.0 34 334592.0 35 618254.0 36 1772904.0 37 4281188.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.93058231389206 24.03954973421954 14.941331634036331 24.088536317852068 2 13.445918606275212 21.779286172021987 40.92342534321418 23.851369878488626 3 16.118960888782997 27.120056154851007 32.60588598963169 24.15509696673431 4 12.009749049023554 19.440947032871332 40.61465325303779 27.93465066506733 5 12.715928992454185 37.66309492723649 36.499731304340905 13.121244775968416 6 27.532864083907764 39.980618460832616 19.95708025032969 12.52943720492993 7 24.395369997617426 33.446039275532584 25.41155919058143 16.74703153626856 8 22.97909803067772 37.82368886433284 22.428024639121897 16.769188465867547 9 24.80832197030868 17.01077525396392 22.624284874002008 35.55661790172539 10-11 22.89052166090193 27.74302403320818 30.160760976281047 19.20569332960885 12-13 23.846812688449436 25.36933778765497 30.20868849462277 20.57516102927282 14-15 21.256473777286658 26.60072262913151 27.71347932088369 24.429324272698143 16-17 20.75029191690561 29.55264568630512 28.489299204301783 21.20776319248749 18-19 20.81033770960507 28.975063569591757 29.877650359029552 20.336948361773622 20-21 21.760498149532793 28.062375754826235 29.63004327652243 20.54708281911854 22-23 21.469018085992666 28.064320643468328 29.398803125192362 21.067858145346648 24-25 21.255811618692594 28.142799626865 29.545990840064718 21.05539791437769 26-27 21.182011151630007 28.31274380749427 29.474847524522385 21.03039751635334 28-29 21.114767166997286 28.339927760079636 29.496702615409742 21.048602457513333 30-31 21.35490950923053 28.17298665946419 29.49986559584397 20.972238235461308 32-33 21.276616124489774 28.19886401440505 29.394577084667922 21.12994277643725 34-35 21.362721640928054 28.258523245073413 29.417571817375805 20.961183296622725 36-37 21.31786419359872 28.248113155237707 29.356532099894135 21.077490551269438 38-39 21.19369229575607 28.320428272170066 29.420138619494658 21.0657408125792 40-41 21.321704511254786 28.162133272449903 29.408656690086033 21.10750552620928 42-43 21.282471696247928 28.231771180946748 29.190646467153776 21.29511065565155 44-45 21.319529399218208 28.284448937948888 29.138048511420283 21.25797315141262 46-47 21.35197763828705 28.274151637673423 29.00078647411623 21.373084249923295 48-49 21.388001870960117 28.375306626457874 28.94801921304704 21.288672289534972 50-51 21.359628783533697 28.402691058102608 28.877547386658865 21.360132771704833 52-53 21.46448454981353 28.396909962706445 28.826924613745337 21.311680873734684 54-55 21.492261662812577 28.35636356535304 28.772388385599264 21.37898638623512 56-57 21.46663042566959 28.39344179477313 28.70301076158762 21.43691701796966 58-59 21.38086378216283 28.415076574941377 28.880500396601665 21.323559246294124 60-61 21.477486621348184 28.474017971396258 28.77172249497401 21.276772912281537 62-63 21.41108398725981 28.536520936949483 28.799915349205673 21.25247972658503 64-65 21.474953191453164 28.41055503062055 28.749276451750944 21.365215326175342 66-67 21.459859616619102 28.489698797787593 28.65267719310814 21.39776439248516 68-69 21.455867970430827 28.446362223289217 28.643812420089816 21.453957386190144 70-71 21.431581077005614 28.346770783146503 28.70996634160698 21.511681798240904 72-73 21.47218614484562 28.37012028189923 28.65231397205705 21.50537960119809 74-75 21.477397260322533 28.37912732433682 28.57278173565372 21.570693679686926 76-77 21.5324064124711 28.315585427515323 28.51528193222338 21.636726227790195 78-79 21.507072771187712 28.31262074912927 28.567832392427295 21.612474087255727 80-81 21.487820617314856 28.367276132462404 28.54006363591399 21.604839614308744 82-83 21.649639480076193 28.299318358047486 28.559971913678332 21.491070248197985 84-85 21.614979263894718 28.36778719241248 28.501121172463016 21.516112371229788 86-87 21.55596317831839 28.38281690395277 28.566328586229318 21.494891331499524 88-89 21.625241423924557 28.32946395960978 28.50619541263765 21.539099203828012 90-91 21.68537086316799 28.365843052991973 28.4821907773116 21.46659530652844 92-93 21.675127762586328 28.355041381167762 28.505989548294576 21.463841307951338 94-95 21.537921561287384 28.504467766190427 28.47688981348083 21.480720859041355 96-97 21.617116724288838 28.591611409772423 28.55298523127211 21.238286634666633 98-99 22.63052281224356 30.442331850387433 28.864131581678944 18.063013755690065 100 21.46901879783323 31.406468790216802 22.908090832982815 24.216421578967157 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 906.0 1 1041.5 2 1750.0 3 2490.5 4 3154.0 5 4215.0 6 5055.5 7 5945.0 8 6853.0 9 7509.5 10 7818.5 11 8095.0 12 9172.5 13 11328.0 14 15231.5 15 19713.0 16 22855.0 17 24323.5 18 24244.5 19 23030.5 20 22036.0 21 22486.0 22 25619.5 23 31905.5 24 41283.0 25 54628.0 26 71335.5 27 89800.5 28 109984.5 29 131624.5 30 152317.5 31 172522.5 32 194079.5 33 214448.0 34 233839.5 35 252277.5 36 269451.5 37 284791.0 38 295184.0 39 303551.0 40 311103.0 41 316333.0 42 318994.5 43 320919.0 44 321267.5 45 320709.0 46 317719.5 47 311560.0 48 303734.0 49 291913.0 50 279024.5 51 265645.5 52 247017.0 53 224246.0 54 203250.0 55 183129.0 56 162429.0 57 141006.0 58 119980.5 59 100669.0 60 81503.0 61 64743.5 62 50432.5 63 37886.5 64 28299.5 65 20309.5 66 14392.5 67 10325.5 68 7013.0 69 4659.5 70 3179.5 71 2147.5 72 1424.5 73 915.5 74 588.0 75 384.5 76 250.5 77 146.5 78 83.0 79 52.5 80 39.0 81 28.5 82 19.5 83 13.0 84 7.5 85 5.0 86 6.5 87 7.0 88 7.0 89 5.0 90 2.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0052118849462277255 6 1.2837155039969765E-5 7 0.0 8 0.0 9 2.567431007993953E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 6.419195139488147E-6 26-27 0.0 28-29 3.2103196624438764E-5 30-31 0.0 32-33 3.214264132797965E-5 34-35 0.0 36-37 4.900034145501098E-4 38-39 1.9396380751730012E-5 40-41 2.3350125532869322E-4 42-43 7.809855530038298E-5 44-45 7.645462770713094E-4 46-47 0.0 48-49 4.6199783969810154E-5 50-51 0.0 52-53 1.265315394180042E-4 54-55 0.002220247776976913 56-57 0.0011554707374348604 58-59 1.687807467886425E-4 60-61 4.6147109928659286E-4 62-63 1.3644532369811037E-4 64-65 7.751630088919429E-4 66-67 0.0014700553858895387 68-69 4.029579615496124E-4 70-71 6.575911164197214E-4 72-73 2.1837752543041504E-4 74-75 1.8433790044661527E-4 76-77 2.1412108575949176E-5 78-79 0.0016963983235271688 80-81 0.0 82-83 9.9223343867545E-4 84-85 1.7637710836785914E-4 86-87 0.0 88-89 7.461425363548624E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 2.950925717045828E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 57.0 20-21 214.0 22-23 368.0 24-25 513.0 26-27 969.0 28-29 1998.0 30-31 6138.0 32-33 8118.0 34-35 11940.0 36-37 20402.0 38-39 24150.0 40-41 25564.0 42-43 29150.0 44-45 36686.0 46-47 38577.0 48-49 36607.0 50-51 32771.0 52-53 30901.0 54-55 33228.0 56-57 35921.0 58-59 38056.0 60-61 38833.0 62-63 39668.0 64-65 42963.0 66-67 47135.0 68-69 48800.0 70-71 50782.0 72-73 45949.0 74-75 46095.0 76-77 48668.0 78-79 51275.0 80-81 51585.0 82-83 49965.0 84-85 49615.0 86-87 51669.0 88-89 55111.0 90-91 56397.0 92-93 58203.0 94-95 70442.0 96-97 244893.0 98-99 564125.0 100-101 5665387.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.22525700135662 #Duplication Level Percentage of deduplicated Percentage of total 1 90.0152231524068 77.61585750350744 2 7.1960761811597145 12.409670362436746 3 1.6427841248277428 4.249484500830626 4 0.5610540982536549 1.9350813525434312 5 0.2351011167475317 1.0135827106430932 6 0.12098300141018443 0.6259074233633186 7 0.06822725809723432 0.4118039004752343 8 0.042852389190467355 0.2955966616856163 9 0.03029347231051547 0.23508561918939094 >10 0.08622850630146889 1.1083883190884054 >50 8.671062812285714E-4 0.050037873022014207 >100 3.0959301336769415E-4 0.049503773214730866 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 2.567431007993953E-5 0.0 2.567431007993953E-5 0.0 5 0.0 2.567431007993953E-5 0.0 2.567431007993953E-5 0.0 6 5.134862015987906E-5 2.567431007993953E-5 0.0 2.567431007993953E-5 1.2837155039969765E-5 7 5.134862015987906E-5 3.85114651199093E-5 0.0 6.418577519984883E-5 1.2837155039969765E-5 8 5.134862015987906E-5 5.134862015987906E-5 0.0 6.418577519984883E-5 2.567431007993953E-5 9 5.134862015987906E-5 1.4120870543966744E-4 0.0 7.70229302398186E-5 3.85114651199093E-5 10-11 5.134862015987906E-5 1.4120870543966744E-4 0.0 8.344150775980348E-5 3.85114651199093E-5 12-13 5.134862015987906E-5 1.4120870543966744E-4 0.0 8.986008527978835E-5 3.85114651199093E-5 14-15 6.418577519984883E-5 1.7330159303959183E-4 0.0 8.986008527978835E-5 5.134862015987906E-5 16-17 1.0269724031975812E-4 1.797201705595767E-4 0.0 1.0269724031975812E-4 5.134862015987906E-5 18-19 1.1553439535972789E-4 1.9897590311953136E-4 0.0 1.4120870543966744E-4 6.418577519984883E-5 20-21 1.1553439535972789E-4 2.18231635679486E-4 0.0 1.6688301551960697E-4 6.418577519984883E-5 22-23 1.2195297287971279E-4 2.18231635679486E-4 0.0 1.9897590311953136E-4 7.060435271983372E-5 24-25 1.2837155039969767E-4 2.631616783193802E-4 0.0 2.5032452327941043E-4 7.70229302398186E-5 26-27 1.2837155039969767E-4 2.8241741087933487E-4 0.0 2.8883598839931973E-4 7.70229302398186E-5 28-29 1.2837155039969767E-4 2.8883598839931973E-4 0.0 4.5571900391892664E-4 7.70229302398186E-5 30-31 1.2837155039969767E-4 3.3376603103921394E-4 0.0 9.82042360557687E-4 7.70229302398186E-5 32-33 1.2837155039969767E-4 3.3376603103921394E-4 0.0 0.002009014763755268 7.70229302398186E-5 34-35 1.4120870543966744E-4 4.1078896127903254E-4 0.0 0.003305567422792215 7.70229302398186E-5 36-37 1.4120870543966744E-4 4.878118915188511E-4 0.0 0.006155415841665503 7.70229302398186E-5 38-39 1.4120870543966744E-4 5.006490465588209E-4 0.0 0.015340400272763871 7.70229302398186E-5 40-41 1.4120870543966744E-4 5.776719767986395E-4 0.0 0.025963146068338855 7.70229302398186E-5 42-43 1.4120870543966744E-4 6.03346286878579E-4 0.0 0.03204795755728452 7.70229302398186E-5 44-45 1.540458604796372E-4 6.932063721583673E-4 0.0 0.03955127467814685 7.70229302398186E-5 46-47 1.6688301551960697E-4 7.573921473582162E-4 0.0 0.04844100454332591 8.986008527978835E-5 48-49 1.7330159303959183E-4 7.573921473582162E-4 0.0 0.057459105958904674 8.986008527978835E-5 50-51 2.0539448063951624E-4 8.087407675180952E-4 0.0 0.06667618327760297 8.986008527978835E-5 52-53 2.18231635679486E-4 8.21577922558065E-4 0.0 0.09268425938858171 9.627866279977324E-5 54-55 2.18231635679486E-4 8.344150775980348E-4 0.0 0.12414170781402763 1.09115817839743E-4 56-57 2.18231635679486E-4 8.600893876779743E-4 0.0 0.16638878505056812 1.1553439535972789E-4 58-59 2.18231635679486E-4 8.600893876779743E-4 0.0 0.19968194664672972 1.1553439535972789E-4 60-61 2.246502131994709E-4 8.857636977579139E-4 0.0 0.21869377326092493 1.1553439535972789E-4 62-63 2.5674310079939534E-4 9.371123179177929E-4 0.0 0.23283389953745165 1.1553439535972789E-4 64-65 2.5674310079939534E-4 0.0010847396008774454 0.0 0.23726913660376117 1.1553439535972789E-4 66-67 2.631616783193802E-4 0.0010911581783974301 0.0 0.2410881902281522 1.2195297287971279E-4 68-69 2.695802558393651E-4 0.0011232510659973545 0.0 0.24529235850374229 1.2837155039969767E-4 70-71 2.7599883335935E-4 0.0011617625311172637 0.0 0.24891885480253373 1.2837155039969767E-4 72-73 2.8241741087933487E-4 0.0011681811086372486 0.0 0.2521281435625262 1.2837155039969767E-4 74-75 2.8241741087933487E-4 0.001200273996237173 0.0 0.2545736215976404 1.2837155039969767E-4 76-77 2.8241741087933487E-4 0.001315808391596901 0.0 0.25689714665987495 1.2837155039969767E-4 78-79 2.8241741087933487E-4 0.0013607384342367952 0.0 0.2583798380669915 1.2837155039969767E-4 80-81 2.8241741087933487E-4 0.0013607384342367952 0.0 0.2588291384933904 1.2837155039969767E-4 82-83 2.8241741087933487E-4 0.0013607384342367952 0.0 0.25936188042754915 1.4762728295965232E-4 84-85 2.8883598839931973E-4 0.001373575589276765 0.0 0.25968280930354837 1.540458604796372E-4 86-87 2.9525456591930464E-4 0.0014120870543966743 0.0 0.2597662508113082 1.540458604796372E-4 88 2.9525456591930464E-4 0.0014634356745565533 0.0 0.2597726693888282 1.540458604796372E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8730 0.0 50.574413 1 GTATCAA 15620 0.0 35.509315 1 ATCAACG 18625 0.0 29.732704 3 TCAACGC 18780 0.0 29.581442 4 CAACGCA 19205 0.0 28.949827 5 TATCAAC 19850 0.0 28.075932 2 AACGCAG 19930 0.0 28.005608 6 ACGCAGA 23030 0.0 24.101532 7 CGCAGAG 23880 0.0 23.243647 8 GCAGAGT 28635 0.0 19.337612 9 GAGTACT 14990 0.0 18.691174 12-13 AGAGTAC 26185 0.0 18.21877 10-11 CAGAGTA 28235 0.0 17.709885 10-11 GTACATG 22850 0.0 17.62024 1 TACATGG 22735 0.0 17.456654 2 ACATGGG 23080 0.0 16.697842 3 GTACTTT 17885 0.0 15.591753 14-15 AGTACTT 17385 0.0 15.251955 12-13 CATGGGG 15575 0.0 14.78391 4 TATACAG 6875 0.0 13.821188 5 >>END_MODULE