##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138989_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9043128 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.267370648740126 25.0 18.0 32.0 18.0 33.0 2 26.50458889888543 28.0 18.0 31.0 18.0 33.0 3 28.78272816662553 30.0 27.0 32.0 18.0 33.0 4 29.53127125923685 31.0 29.0 33.0 25.0 33.0 5 31.065920331991318 32.0 32.0 33.0 27.0 33.0 6 36.066951944061834 37.0 36.0 38.0 33.0 38.0 7 36.17956242574472 38.0 37.0 38.0 33.0 38.0 8 36.85443167452678 38.0 38.0 38.0 35.0 38.0 9 37.01326288868188 38.0 38.0 38.0 36.0 38.0 10-11 37.08707379791594 38.0 38.0 38.0 36.0 38.0 12-13 37.13234010399941 38.0 38.0 38.0 36.0 38.0 14-15 37.15702105510394 38.0 38.0 38.0 36.0 38.0 16-17 37.13296826053994 38.0 38.0 38.0 36.0 38.0 18-19 37.170404919625156 38.0 38.0 38.0 36.0 38.0 20-21 37.135643038282005 38.0 38.0 38.0 36.0 38.0 22-23 37.178263177752754 38.0 38.0 38.0 36.0 38.0 24-25 37.18559484582379 38.0 38.0 38.0 36.0 38.0 26-27 37.117738334512225 38.0 38.0 38.0 36.0 38.0 28-29 37.10686200962563 38.0 38.0 38.0 36.0 38.0 30-31 36.979413790861415 38.0 38.0 38.0 36.0 38.0 32-33 37.07751517694155 38.0 38.0 38.0 36.0 38.0 34-35 37.09425601737054 38.0 38.0 38.0 36.0 38.0 36-37 37.02114356805157 38.0 38.0 38.0 36.0 38.0 38-39 37.06233627108208 38.0 38.0 38.0 36.0 38.0 40-41 36.97568485817084 38.0 38.0 38.0 36.0 38.0 42-43 36.95797700291082 38.0 38.0 38.0 36.0 38.0 44-45 36.958501666049045 38.0 38.0 38.0 36.0 38.0 46-47 36.92121632419369 38.0 38.0 38.0 36.0 38.0 48-49 36.88757316800875 38.0 38.0 38.0 35.0 38.0 50-51 36.90458967564872 38.0 38.0 38.0 35.5 38.0 52-53 36.81338666873071 38.0 38.0 38.0 35.0 38.0 54-55 36.80077390331493 38.0 38.0 38.0 35.0 38.0 56-57 36.80552644684812 38.0 38.0 38.0 35.0 38.0 58-59 36.82720140713836 38.0 38.0 38.0 35.0 38.0 60-61 36.823500224805606 38.0 38.0 38.0 35.0 38.0 62-63 36.82939412976718 38.0 38.0 38.0 35.0 38.0 64-65 36.78410005072578 38.0 38.0 38.0 35.0 38.0 66-67 36.78700659770328 38.0 38.0 38.0 35.0 38.0 68-69 36.80149399811181 38.0 38.0 38.0 35.0 38.0 70-71 36.71479730833515 38.0 38.0 38.0 34.5 38.0 72-73 36.66763808110656 38.0 38.0 38.0 34.0 38.0 74-75 36.719742248824176 38.0 38.0 38.0 34.5 38.0 76-77 36.69124831974262 38.0 38.0 38.0 34.0 38.0 78-79 36.70937649050384 38.0 38.0 38.0 34.5 38.0 80-81 36.73497571230503 38.0 38.0 38.0 35.0 38.0 82-83 36.603246935230075 38.0 38.0 38.0 34.0 38.0 84-85 36.62030083861579 38.0 38.0 38.0 34.0 38.0 86-87 36.61777013848185 38.0 38.0 38.0 34.0 38.0 88-89 36.5627380659987 38.0 38.0 38.0 34.0 38.0 90-91 36.56235420610996 38.0 38.0 38.0 34.0 38.0 92-93 36.61124414679187 38.0 38.0 38.0 34.0 38.0 94-95 36.50587213438003 38.0 38.0 38.0 34.0 38.0 96-97 36.4629698190928 38.0 38.0 38.0 34.0 38.0 98-99 36.529791406531146 38.0 38.0 38.0 34.0 38.0 100 34.93524055526974 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 8.0 18 39.0 19 51.0 20 123.0 21 296.0 22 988.0 23 2721.0 24 6336.0 25 12579.0 26 21804.0 27 34976.0 28 52240.0 29 74737.0 30 100903.0 31 135681.0 32 180825.0 33 251010.0 34 386982.0 35 730027.0 36 2150839.0 37 4899963.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.82859514981984 24.145085638509155 14.702136251969453 24.324182959701552 2 13.700204177138705 21.395373370807093 40.327660959791785 24.57676149226241 3 16.23352008287398 26.49093322575994 32.46577953999988 24.80976715136621 4 12.37209071905208 18.87393388659322 40.12963213613697 28.62434325821773 5 13.095661349659057 37.275061339241866 36.22583324550968 13.40344406558939 6 28.41849157028222 39.55036123570544 19.431908833295036 12.599238360717301 7 24.935796551812604 33.209670370694745 24.97280808145146 16.881724996041193 8 23.401239040296677 37.47348262680789 22.057378818479624 17.067899514415807 9 25.01221093101977 16.771543737028132 22.254448046566193 35.961797285385906 10-11 23.297143422054848 27.278663975562438 30.01760563380282 19.406586968579898 12-13 24.075933681354506 24.941773465995396 30.03778670389272 20.944506148757377 14-15 21.544823870678375 26.261211828473513 27.3239801537698 24.869984147078313 16-17 21.251490634656502 29.226225704203234 28.0824013549294 21.43988230621086 18-19 21.313250238191916 28.596675840483517 29.449400694096113 20.640673227228454 20-21 22.185859115982844 27.763347725050906 29.113578236365754 20.937214922600493 22-23 21.862891791392418 27.657890279970047 28.969148018372394 21.510069910265138 24-25 21.602950548182104 27.815087552927807 29.088285588291807 21.493676310598282 26-27 21.642323233384523 27.949533250864455 28.921856777332376 21.486286738418645 28-29 21.608966044653346 27.937962491152753 29.050869830288256 21.402201633905644 30-31 21.837622790229616 27.796401152433358 28.93227268265242 21.433703374684605 32-33 21.66220264482146 27.943613451881266 28.836772350174968 21.557411553122304 34-35 21.72658248859564 27.959921713706017 28.867421812734474 21.446073984963874 36-37 21.71431745969604 27.869101883891496 28.867363957729225 21.549216698683242 38-39 21.589911750756805 27.995117120027253 28.952416532231013 21.46255459698493 40-41 21.83368128531919 27.85949325094918 28.85536562020721 21.45145984352442 42-43 21.69114962430861 27.961062573000785 28.694679315241533 21.653108487449067 44-45 21.75740226321746 27.998243061279172 28.58976272282539 21.654591952677976 46-47 21.82227186423549 27.965385725341296 28.49113345785024 21.721208952572976 48-49 21.772278942596188 28.063259006958337 28.490163297838794 21.67429875260668 50-51 21.71554373177549 28.112821400326403 28.42001800206929 21.75161686582881 52-53 21.892254879570824 28.1080715392113 28.304257893253894 21.69541568796398 54-55 21.928992077352103 27.93618874232413 28.37209780270135 21.762721377622412 56-57 21.873090860619314 27.992094864428196 28.338223220223963 21.796591054728527 58-59 21.7779309005015 28.067892189733534 28.443396323313415 21.710780586451552 60-61 21.871946752334868 28.065858432213613 28.435225202263776 21.626969613187747 62-63 21.932609066187123 28.085706463350828 28.346779964806153 21.6349045056559 64-65 21.85112056538231 28.090252356377103 28.32231662948619 21.736310448754402 66-67 21.89821165731771 28.172868814583712 28.196174281821335 21.732745246277247 68-69 21.866787710687095 28.058635332892568 28.256313500619612 21.818263455800725 70-71 21.85805996491612 27.92637732557685 28.290658281827486 21.924904427679543 72-73 21.915442220810633 27.93867466685313 28.236578418499512 21.909304693836724 74-75 21.845976535986246 28.001118454625175 28.201046863620377 21.951858145768206 76-77 21.975843215148725 27.958027095050397 28.080997562986337 21.985132126814545 78-79 21.911865558385816 28.029804918438938 28.067850968366898 21.990478554808345 80-81 21.959868169285198 28.02503412272114 28.03328479042639 21.981812917567275 82-83 21.954591798735606 27.992308943274303 28.132290927979316 21.92080833001077 84-85 22.049231004918724 28.034824677746855 28.044196739925596 21.871747577408822 86-87 21.93435178677653 28.03734558524093 28.109761386625703 21.91854124135683 88-89 21.978814060781403 28.013155659273554 28.08232400946415 21.925706270480894 90-91 22.04155608589302 28.08199365412158 28.033796023111368 21.842654236874033 92-93 22.076029067136936 28.041936739325628 28.024205079990562 21.857829113546874 94-95 21.973380628219 28.09461674935631 28.05793426312938 21.874068359295308 96-97 21.996543791059363 28.165695332549284 28.16987612045798 21.66788475593338 98-99 23.045129228105203 30.07491853417149 28.38375741096901 18.496194826754294 100 21.876382254714066 30.992776244552022 22.45143131042372 24.67941019031019 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 788.0 1 947.0 2 1676.5 3 2432.0 4 3023.5 5 3915.5 6 4725.5 7 5720.0 8 6842.0 9 7775.5 10 8297.0 11 8654.0 12 9677.0 13 11793.0 14 15507.5 15 19738.5 16 22627.0 17 23774.5 18 23911.5 19 23563.0 20 23262.5 21 24163.5 22 27918.5 23 35159.0 24 46007.0 25 61599.5 26 81043.5 27 102002.0 28 123987.0 29 146657.5 30 167913.0 31 189755.5 32 212785.5 33 234877.0 34 256891.0 35 277363.5 36 297548.5 37 315987.5 38 327918.5 39 337750.0 40 349275.0 41 358180.5 42 362618.0 43 364917.5 44 365893.0 45 366420.5 46 364066.0 47 359625.0 48 354447.5 49 346347.0 50 335239.0 51 320294.5 52 301356.5 53 279773.0 54 258157.0 55 236798.5 56 215860.0 57 194361.0 58 170845.5 59 147018.0 60 122498.5 61 98523.0 62 76968.0 63 59043.0 64 44868.0 65 34369.5 66 26726.5 67 19302.0 68 13310.5 69 9931.5 70 6925.0 71 4208.0 72 2893.5 73 1904.5 74 1145.5 75 665.5 76 401.5 77 232.0 78 142.5 79 78.0 80 45.0 81 34.5 82 31.0 83 23.5 84 10.5 85 3.0 86 3.0 87 2.5 88 2.0 89 2.5 90 2.5 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0042573764299255745 6 2.2116241194418567E-5 7 0.0 8 0.0 9 1.1058120597209283E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.658853650290869E-5 26-27 0.0 28-29 2.7654123899103156E-5 30-31 0.0 32-33 2.7697590176706197E-5 34-35 0.0 36-37 4.893662928946239E-4 38-39 4.464753616478334E-5 40-41 2.4652880439749114E-4 42-43 9.001148208968407E-5 44-45 7.066145053260362E-4 46-47 0.0 48-49 5.7181286234708936E-5 50-51 1.1499244470890151E-5 52-53 1.1554633803901573E-4 54-55 0.002136393515790241 56-57 0.0010621617933866537 58-59 1.3499301968702984E-4 60-61 3.8375314352863496E-4 62-63 1.0096098825841523E-4 64-65 7.947548094766564E-4 66-67 0.0013836301751453217 68-69 4.120424246151721E-4 70-71 6.470746305356471E-4 72-73 1.7219484904938296E-4 74-75 1.8578945966851447E-4 76-77 0.0 78-79 0.0015841792295118004 80-81 0.0 82-83 8.367550333210545E-4 84-85 8.367905657399403E-5 86-87 6.487707999162307E-6 88-89 9.812959753519385E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 2.0460584116939603E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 45.0 20-21 188.0 22-23 409.0 24-25 485.0 26-27 1189.0 28-29 2858.0 30-31 9108.0 32-33 12303.0 34-35 18432.0 36-37 30669.0 38-39 34881.0 40-41 35273.0 42-43 40577.0 44-45 49012.0 46-47 51129.0 48-49 48986.0 50-51 43039.0 52-53 41007.0 54-55 44779.0 56-57 47474.0 58-59 49376.0 60-61 50236.0 62-63 51016.0 64-65 54719.0 66-67 59157.0 68-69 60545.0 70-71 61676.0 72-73 56720.0 74-75 57959.0 76-77 60526.0 78-79 63103.0 80-81 63285.0 82-83 60346.0 84-85 60213.0 86-87 63088.0 88-89 66224.0 90-91 67263.0 92-93 68344.0 94-95 84366.0 96-97 290461.0 98-99 650689.0 100-101 6431973.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.23480368415139 #Duplication Level Percentage of deduplicated Percentage of total 1 89.98186078478082 76.69586239125434 2 6.971640079637205 11.884527470888774 3 1.673743495044473 4.279835946532231 4 0.6225070587557484 2.122370677801788 5 0.28366494031012407 1.2089062749704973 6 0.15971035865101094 0.8167728639566595 7 0.08699829807141475 0.5190697999880626 8 0.05322763020407411 0.362947728881349 9 0.03925153017099887 0.30110368215848693 >10 0.1250861172536113 1.612118120872647 >50 0.001968399871425204 0.10964579272016829 >100 2.771834149191531E-4 0.04650329347234986 >500 6.412383420662534E-5 0.040335956502644425 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.211624119441857E-5 0.0 2 0.0 0.0 0.0 2.211624119441857E-5 0.0 3 0.0 0.0 0.0 3.317436179162785E-5 0.0 4 0.0 3.317436179162785E-5 0.0 3.317436179162785E-5 0.0 5 0.0 3.317436179162785E-5 0.0 3.317436179162785E-5 0.0 6 0.0 3.317436179162785E-5 0.0 3.317436179162785E-5 0.0 7 0.0 3.317436179162785E-5 0.0 4.423248238883714E-5 1.1058120597209285E-5 8 0.0 5.5290602986046423E-5 0.0 4.423248238883714E-5 1.1058120597209285E-5 9 0.0 1.5481368836092998E-4 0.0 6.63487235832557E-5 2.211624119441857E-5 10-11 0.0 1.5481368836092998E-4 0.0 8.846496477767428E-5 3.317436179162785E-5 12-13 0.0 1.5481368836092998E-4 0.0 1.050521456734882E-4 3.317436179162785E-5 14-15 0.0 2.101042913469764E-4 0.0 1.437555677637207E-4 6.081966328465106E-5 16-17 0.0 2.211624119441857E-4 0.0 1.4928462806232534E-4 7.740684418046499E-5 18-19 0.0 2.488077134372089E-4 0.0 1.5481368836092998E-4 9.399402507627891E-5 20-21 0.0 2.764530149302321E-4 0.0 1.714008692567439E-4 1.1058120597209285E-4 22-23 1.1058120597209285E-5 3.040983164232553E-4 0.0 1.990461707497671E-4 1.1058120597209285E-4 24-25 1.1058120597209285E-5 3.7597610030511565E-4 0.0 2.1563335164558105E-4 1.2163932656930212E-4 26-27 1.1058120597209285E-5 3.8703422090232494E-4 0.0 2.4327865313860425E-4 1.2163932656930212E-4 28-29 1.1058120597209285E-5 3.980923414995342E-4 0.0 4.1467952239534816E-4 1.437555677637207E-4 30-31 1.1058120597209285E-5 4.4785388418697603E-4 0.0 0.0010505214567348821 1.6587180895813927E-4 32-33 1.1058120597209285E-5 4.533829444855807E-4 0.0 0.002559954918253949 1.6587180895813927E-4 34-35 1.1058120597209285E-5 5.197316680688364E-4 0.0 0.004450893540376737 1.7692992955534856E-4 36-37 2.211624119441857E-5 5.971385122493013E-4 0.0 0.008083486156559988 1.8798805015255782E-4 38-39 2.211624119441857E-5 6.247838137423246E-4 0.0 0.019959907677962758 1.8798805015255782E-4 40-41 2.211624119441857E-5 7.187778388186034E-4 0.0 0.033019548103266926 1.8798805015255782E-4 42-43 2.211624119441857E-5 7.243068991172081E-4 0.0 0.040887400908181326 2.101042913469764E-4 44-45 2.211624119441857E-5 7.795975021032545E-4 0.0 0.04952379309460178 2.211624119441857E-4 46-47 2.211624119441857E-5 8.293590447906963E-4 0.0 0.05976914182791618 2.4327865313860425E-4 48-49 2.7645301493023212E-5 8.34888105089301E-4 0.0 0.06961639821973105 2.4327865313860425E-4 50-51 3.317436179162785E-5 9.952308537488357E-4 0.0 0.07975669480737196 2.4327865313860425E-4 52-53 3.317436179162785E-5 9.952308537488357E-4 0.0 0.1111230538813561 2.4327865313860425E-4 54-55 3.317436179162785E-5 0.0010118180346446496 0.0 0.1502135101924909 2.4327865313860425E-4 56-57 3.317436179162785E-5 0.0010394633361376726 0.0 0.2022474966626592 2.543367737358135E-4 58-59 3.317436179162785E-5 0.0010449923964362773 0.0 0.24208437611410566 2.653948943330228E-4 60-61 3.317436179162785E-5 0.0010615795773320912 0.0 0.2610324657574238 2.653948943330228E-4 62-63 3.8703422090232495E-5 0.0010892248788251144 0.0 0.273754833504513 2.653948943330228E-4 64-65 4.423248238883714E-5 0.0012274513862902306 0.0 0.27834948261265346 2.653948943330228E-4 66-67 4.423248238883714E-5 0.0012274513862902306 0.0 0.2828114342736274 2.7092395463162745E-4 68-69 4.423248238883714E-5 0.0012495676274846491 0.0 0.2866983636635465 2.764530149302321E-4 70-71 4.423248238883714E-5 0.0012550966877832538 0.0 0.2904857699680907 2.875111355274414E-4 72-73 4.423248238883714E-5 0.0012606257480818584 0.0 0.29383638050904515 2.9856925612465067E-4 74-75 4.423248238883714E-5 0.001299329170172091 0.0 0.29626363798013255 2.9856925612465067E-4 76-77 4.423248238883714E-5 0.0013656778937553467 0.0 0.29852502364226186 2.9856925612465067E-4 78-79 4.423248238883714E-5 0.00139332319524837 0.0 0.300145038309753 2.9856925612465067E-4 80-81 4.423248238883714E-5 0.0014043813158455792 0.0 0.3007421768220023 3.151564370204646E-4 82-83 4.423248238883714E-5 0.0014209684967413931 0.0 0.3012010888267865 3.372726782148832E-4 84-85 4.423248238883714E-5 0.0014320266173386022 0.0 0.3014167221784321 3.483307988120925E-4 86-87 4.423248238883714E-5 0.0014596719188316254 0.0 0.3014996580829111 3.593889194093017E-4 88 4.423248238883714E-5 0.0015260206424148812 0.0 0.30152177432410554 3.6491797970790636E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8910 0.0 49.44083 1 GTATCAA 15780 0.0 34.067238 1 TCAACGC 18580 0.0 29.406082 4 ATCAACG 18835 0.0 28.868055 3 CAACGCA 19325 0.0 28.249718 5 AACGCAG 20045 0.0 27.343206 6 TATCAAC 20405 0.0 26.79756 2 ACGCAGA 23320 0.0 23.409033 7 CGCAGAG 23900 0.0 22.822573 8 GCAGAGT 29675 0.0 18.469908 9 GAGTACT 15660 0.0 18.25703 12-13 AGAGTAC 26460 0.0 18.016933 10-11 GTACATG 23000 0.0 17.033327 1 CAGAGTA 29290 0.0 17.01085 10-11 TACATGG 23335 0.0 16.93937 2 ACATGGG 23000 0.0 16.80418 3 GTACTTT 17650 0.0 15.974777 14-15 CATGGGG 16615 0.0 14.697279 4 AGTACTT 19305 0.0 13.797547 12-13 ATGGGGG 9565 0.0 12.535458 5 >>END_MODULE