##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138988_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6751419 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.585576010021004 25.0 18.0 32.0 18.0 33.0 2 26.705704830347518 28.0 18.0 32.0 18.0 33.0 3 28.92037807163205 31.0 27.0 33.0 18.0 33.0 4 29.631369494324083 31.0 29.0 33.0 25.0 33.0 5 31.057807699388825 32.0 32.0 33.0 27.0 33.0 6 36.0498006419095 37.0 36.0 38.0 33.0 38.0 7 36.16822907895362 38.0 37.0 38.0 33.0 38.0 8 36.84419408719856 38.0 38.0 38.0 35.0 38.0 9 37.00193796296749 38.0 38.0 38.0 35.0 38.0 10-11 37.0747724293219 38.0 38.0 38.0 36.0 38.0 12-13 37.12282432774502 38.0 38.0 38.0 36.0 38.0 14-15 37.14364498781663 38.0 38.0 38.0 36.0 38.0 16-17 37.11999136774062 38.0 38.0 38.0 36.0 38.0 18-19 37.15679281644347 38.0 38.0 38.0 36.0 38.0 20-21 37.12366884992379 38.0 38.0 38.0 36.0 38.0 22-23 37.16548009397745 38.0 38.0 38.0 36.0 38.0 24-25 37.17206924445891 38.0 38.0 38.0 36.0 38.0 26-27 37.10430276993951 38.0 38.0 38.0 36.0 38.0 28-29 37.09034508278905 38.0 38.0 38.0 36.0 38.0 30-31 36.95911772959026 38.0 38.0 38.0 36.0 38.0 32-33 37.05709099391821 38.0 38.0 38.0 36.0 38.0 34-35 37.07588689237097 38.0 38.0 38.0 36.0 38.0 36-37 37.002014389057216 38.0 38.0 38.0 36.0 38.0 38-39 37.04090384503904 38.0 38.0 38.0 36.0 38.0 40-41 36.96175439839014 38.0 38.0 38.0 36.0 38.0 42-43 36.944780358524724 38.0 38.0 38.0 36.0 38.0 44-45 36.94602817809406 38.0 38.0 38.0 36.0 38.0 46-47 36.90834700107655 38.0 38.0 38.0 35.5 38.0 48-49 36.87561027035365 38.0 38.0 38.0 35.0 38.0 50-51 36.8929203228364 38.0 38.0 38.0 35.0 38.0 52-53 36.80385358472664 38.0 38.0 38.0 35.0 38.0 54-55 36.787744199591785 38.0 38.0 38.0 35.0 38.0 56-57 36.78912809102155 38.0 38.0 38.0 35.0 38.0 58-59 36.81088939602799 38.0 38.0 38.0 35.0 38.0 60-61 36.8064872682384 38.0 38.0 38.0 35.0 38.0 62-63 36.811061366045735 38.0 38.0 38.0 35.0 38.0 64-65 36.762479240347794 38.0 38.0 38.0 35.0 38.0 66-67 36.76427618104677 38.0 38.0 38.0 35.0 38.0 68-69 36.777766778493394 38.0 38.0 38.0 35.0 38.0 70-71 36.69335986320058 38.0 38.0 38.0 34.5 38.0 72-73 36.64316983329289 38.0 38.0 38.0 34.0 38.0 74-75 36.69442183548361 38.0 38.0 38.0 34.0 38.0 76-77 36.66975993884299 38.0 38.0 38.0 34.0 38.0 78-79 36.686928116733 38.0 38.0 38.0 34.0 38.0 80-81 36.706685452753646 38.0 38.0 38.0 34.0 38.0 82-83 36.57263527618238 38.0 38.0 38.0 34.0 38.0 84-85 36.59168069243226 38.0 38.0 38.0 34.0 38.0 86-87 36.586203605826796 38.0 38.0 38.0 34.0 38.0 88-89 36.532032385115 38.0 38.0 38.0 34.0 38.0 90-91 36.53062131996414 38.0 38.0 38.0 34.0 38.0 92-93 36.57768569980732 38.0 38.0 38.0 34.0 38.0 94-95 36.46812389023718 38.0 38.0 38.0 34.0 38.0 96-97 36.423919958999576 38.0 38.0 38.0 34.0 38.0 98-99 36.49078433450961 38.0 38.0 38.0 34.0 38.0 100 34.884459293040344 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 8.0 18 31.0 19 35.0 20 66.0 21 223.0 22 716.0 23 2139.0 24 4914.0 25 9412.0 26 16978.0 27 26641.0 28 40453.0 29 56391.0 30 77025.0 31 103469.0 32 138234.0 33 191119.0 34 292881.0 35 547559.0 36 1591578.0 37 3651547.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.06142367997009 23.790361700258863 14.800755219013958 24.347459400757085 2 13.722626310113473 21.358028586286824 40.15823932716959 24.76110577643011 3 16.279570265154632 26.38940050972988 32.59489597668283 24.73613324843266 4 12.504867495262847 18.91661589956126 39.734935722401474 28.843580882774422 5 13.181796838536105 37.22657286287461 36.11201590019305 13.479614398396233 6 28.600728232094614 39.19066495502649 19.308711250183112 12.899895562695782 7 24.990687142954688 33.196310286770824 24.83691206248642 16.976090507788065 8 23.53454881114622 37.285169236274626 21.938439904263088 17.241842048316062 9 25.03125639217474 16.804719126453268 22.136561217723266 36.02746326364873 10-11 23.45498035301912 27.166429753508115 29.77934712687807 19.599242766594696 12-13 24.257085806702264 24.806866526873833 29.825885491627762 21.110162174796145 14-15 21.699016162380087 26.133513562111904 27.12391276559787 25.04355750991014 16-17 21.323872803628394 29.137185827157225 27.90995492947483 21.628986439739556 18-19 21.3962279633363 28.581213815940025 29.17497047657685 20.84758774414682 20-21 22.24751955579258 27.653495225076856 28.86316562662632 21.235819592504242 22-23 21.998982363183767 27.60999772624088 28.731501636439987 21.659518274135362 24-25 21.847663700230726 27.741805266997755 28.765444169157213 21.64508686361431 26-27 21.767481806251578 27.82221994398094 28.821620522897856 21.58867772686962 28-29 21.676272996100415 27.834978597853784 28.83259942902912 21.65614897701668 30-31 21.963040166373887 27.699452104533435 28.784590400157395 21.552917328935283 32-33 21.915134452037776 27.740501318203798 28.737354906297842 21.607009323460584 34-35 21.886068702942566 27.75221833028865 28.77689954495446 21.584813421814328 36-37 21.90206319518699 27.750276256924305 28.71227319813135 21.63538734975736 38-39 21.75238719050455 27.832676647984876 28.811883668181178 21.6030524933294 40-41 21.883792490633542 27.740231704544012 28.742478513282098 21.633497291540344 42-43 21.84040046026484 27.80268169179218 28.56634950771369 21.79056834022929 44-45 21.815474905159892 27.858655471480535 28.478504803186418 21.84736482017316 46-47 22.012476084405446 27.76831557464916 28.32049972017335 21.898708620772048 48-49 21.915217605814302 27.87740860468395 28.348754143354764 21.85861964614698 50-51 21.827581458443817 27.970803120062065 28.32627665222639 21.87533876926773 52-53 22.017546354281002 27.927974352073782 28.22038259411946 21.834096699525755 54-55 21.985946126298256 27.86487632843484 28.185934381506655 21.963243163760247 56-57 21.98618938513178 27.94562522641668 28.130517499454566 21.937667888996977 58-59 21.844540935637323 27.946322703018346 28.258231703311843 21.950904658032492 60-61 22.117235681700667 27.984845764803744 28.25732382106739 21.64059473242819 62-63 21.90216727211631 28.100410237741873 28.22907889344001 21.768343596701804 64-65 21.899945344138956 28.047768870244294 28.101295742655928 21.950990042960818 66-67 21.86854864379534 28.08530219615163 28.194076310751065 21.852072849301965 68-69 21.835839777224734 28.128855830483 28.099207943033143 21.93609644925912 70-71 21.8977716496078 27.938338216053165 27.97758730423483 22.186302830104207 72-73 21.976499377411717 27.9108665646059 27.979847595937144 22.132786462045235 74-75 21.92564187605016 27.996093288256912 28.060603444052063 22.017661391640864 76-77 22.03458141572406 27.755419521255437 27.9777384399107 22.232260623109802 78-79 21.950782249302573 27.782742696669082 27.8524346126096 22.414040441418745 80-81 22.164415828864833 27.963235894746465 27.792019980669746 22.080328295718953 82-83 22.169819745555465 27.76692976671338 27.89297564091996 22.1702748468112 84-85 22.075598973808436 27.803457762205152 27.850851873668553 22.270091390317855 86-87 21.988470384576456 27.968095056941326 27.892272173612593 22.15116238486963 88-89 22.196935890275174 27.93279821662573 27.812290917327715 22.05797497577138 90-91 22.227931885405372 27.99223201655891 27.79239380514864 21.987442292887074 92-93 22.160660699277287 27.72957791714053 27.8372020520813 22.272559331500887 94-95 22.170022764071096 27.92736562022638 27.88363449867015 22.01897711703237 96-97 22.37004859866221 27.916734653250973 27.980137786348248 21.73307896173857 98-99 23.2010920590284 29.895314834813043 28.287215343970445 18.61637776218811 100 21.964706493556754 30.857556192117592 22.301155634229556 24.876581680096095 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 615.0 1 715.5 2 1220.5 3 1779.0 4 2216.0 5 2868.5 6 3406.5 7 3974.0 8 4627.5 9 5182.5 10 5550.5 11 5901.5 12 6766.5 13 8309.5 14 11144.5 15 14587.5 16 16971.0 17 18147.0 18 18293.0 19 17570.5 20 16910.5 21 17205.5 22 19163.5 23 23551.5 24 30712.0 25 40758.0 26 53347.0 27 67906.5 28 84315.0 29 101809.0 30 118343.0 31 135041.5 32 152969.5 33 170548.0 34 185930.0 35 200067.0 36 215635.0 37 229302.5 38 240031.5 39 249742.5 40 258471.0 41 264915.5 42 269077.5 43 273320.0 44 276703.0 45 280634.5 46 286070.0 47 288423.0 48 285724.0 49 275742.0 50 262158.0 51 249047.0 52 233934.0 53 217351.5 54 201002.5 55 184172.0 56 166493.5 57 148388.0 58 129920.0 59 111014.0 60 91136.0 61 72785.0 62 56809.5 63 42869.0 64 31437.0 65 22504.5 66 16386.0 67 12191.5 68 8745.0 69 6280.5 70 4565.0 71 3307.5 72 2305.5 73 1472.5 74 972.5 75 639.5 76 380.0 77 194.5 78 113.5 79 69.0 80 43.0 81 30.5 82 21.0 83 17.0 84 13.5 85 10.5 86 9.0 87 7.5 88 5.5 89 3.5 90 1.5 91 0.0 92 0.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.004532380526227153 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 7.406830771915461E-6 26-27 0.0 28-29 5.18660016654914E-5 30-31 0.0 32-33 5.1950353570395654E-5 34-35 0.0 36-37 5.885698103769626E-4 38-39 2.9908802826142597E-5 40-41 1.8017077937750245E-4 42-43 6.0311152776065825E-5 44-45 6.364304615621004E-4 46-47 0.0 48-49 9.200418465699881E-5 50-51 7.710253009639434E-6 52-53 8.523884777535132E-5 54-55 0.002250774784437691 56-57 0.0013704237342355263 58-59 1.258647597316469E-4 60-61 3.399146071266971E-4 62-63 1.3523953188347538E-4 64-65 7.686672031323189E-4 66-67 0.0013467550783150175 68-69 3.4946675031112697E-4 70-71 7.045288672101534E-4 72-73 2.3123002647418642E-4 74-75 1.5805171152534709E-4 76-77 8.380853470917894E-6 78-79 0.0015038155517845644 80-81 0.0 82-83 8.9302090424549E-4 84-85 1.7309725867602408E-4 86-87 8.725302268465161E-6 88-89 3.520001661440784E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 3.581047553740505E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 87.0 20-21 312.0 22-23 391.0 24-25 598.0 26-27 1443.0 28-29 2192.0 30-31 7061.0 32-33 9395.0 34-35 13546.0 36-37 23070.0 38-39 26327.0 40-41 27330.0 42-43 31235.0 44-45 38070.0 46-47 39521.0 48-49 37259.0 50-51 33350.0 52-53 31626.0 54-55 34725.0 56-57 37071.0 58-59 21544.0 60-61 40334.0 62-63 39984.0 64-65 43412.0 66-67 47227.0 68-69 47824.0 70-71 50896.0 72-73 44023.0 74-75 44077.0 76-77 47036.0 78-79 48496.0 80-81 47365.0 82-83 46044.0 84-85 46285.0 86-87 48085.0 88-89 50310.0 90-91 51649.0 92-93 52050.0 94-95 63371.0 96-97 234136.0 98-99 488303.0 100-101 4754359.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.31568393384367 #Duplication Level Percentage of deduplicated Percentage of total 1 90.20503032693881 77.86108886942833 2 6.953509635867744 12.00393879920993 3 1.6365749063231132 4.237862470447369 4 0.596070201798646 2.0580082856333735 5 0.2450728052937547 1.057681340125807 6 0.13449369324156393 0.6965349070160495 7 0.07190657551130288 0.4344665671219077 8 0.04386191270385879 0.3028776794944094 9 0.03033277842920297 0.23563750641573553 >10 0.08204613005909696 1.0394531047544664 >50 9.94268788811719E-4 0.05391788152012538 >100 1.0676504411401673E-4 0.018532588832490114 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.4811701066101808E-5 0.0 0.0 0.0 3 0.0 1.4811701066101808E-5 0.0 0.0 0.0 4 0.0 1.4811701066101807E-4 0.0 0.0 0.0 5 0.0 1.4811701066101807E-4 0.0 0.0 0.0 6 0.0 1.4811701066101807E-4 0.0 1.4811701066101808E-5 0.0 7 0.0 1.4811701066101807E-4 0.0 1.4811701066101808E-5 0.0 8 0.0 1.6292871172711988E-4 0.0 1.4811701066101808E-5 1.4811701066101808E-5 9 0.0 2.3698721705762892E-4 0.0 1.4811701066101808E-5 2.9623402132203615E-5 10-11 0.0 2.3698721705762892E-4 0.0 2.221755159915271E-5 2.9623402132203615E-5 12-13 0.0 2.4439306759067983E-4 0.0 2.9623402132203615E-5 2.9623402132203615E-5 14-15 0.0 3.1104572238813794E-4 0.0 2.9623402132203615E-5 2.9623402132203615E-5 16-17 0.0 3.2585742345423975E-4 0.0 5.924680426440723E-5 2.9623402132203615E-5 18-19 0.0 3.3326327398729063E-4 0.0 8.887020639661084E-5 2.9623402132203615E-5 20-21 0.0 3.4066912452034156E-4 0.0 1.1108775799576356E-4 2.9623402132203615E-5 22-23 0.0 3.702925266525452E-4 0.0 1.3330530959491626E-4 2.9623402132203615E-5 24-25 0.0 4.221334803839015E-4 0.0 1.5552286119406897E-4 7.405850533050903E-5 26-27 0.0 4.5916273304915604E-4 0.0 2.2217551599152711E-4 7.405850533050903E-5 28-29 0.0 4.6656858358220697E-4 0.0 2.9623402132203613E-4 7.405850533050903E-5 30-31 0.0 5.702504910449196E-4 0.0 7.405850533050904E-4 7.405850533050903E-5 32-33 0.0 5.776563415779705E-4 0.0 0.0017551865763330641 7.405850533050903E-5 34-35 0.0 6.591206974415304E-4 0.0 0.0036436784622610446 8.887020639661084E-5 36-37 0.0 7.331792027720394E-4 0.0 0.0071910808675924275 9.627605692966175E-5 38-39 0.0 7.628026049042432E-4 0.0 0.018788642802350142 1.1108775799576356E-4 40-41 0.0 8.590786618339048E-4 0.0 0.03199327430277991 1.4811701066101807E-4 42-43 0.0 9.035137650322102E-4 0.0 0.03928063122730199 1.5552286119406897E-4 44-45 0.0 0.0010071956724949228 0.0 0.04761221307698427 1.7774041279322169E-4 46-47 0.0 0.001081254177825432 0.0 0.057269442172082644 1.925521138593235E-4 48-49 0.0 0.0010886600283584829 0.0 0.06639345002880136 1.925521138593235E-4 50-51 0.0 0.0012441828895525518 0.0 0.07590256211323872 1.925521138593235E-4 52-53 0.0 0.0012812121422178064 0.0 0.10790324226655167 2.073638149254253E-4 54-55 0.0 0.001318241394883061 0.0 0.14849470903820366 2.2217551599152711E-4 56-57 0.0 0.0014071116012796716 0.0 0.1960698928625227 2.2217551599152711E-4 58-59 0.0 0.0014071116012796716 0.0 0.3592429976572332 2.2217551599152711E-4 60-61 0.0 0.001458952555011028 0.0 0.49739913935129787 2.2217551599152711E-4 62-63 0.0 0.0014885759571432317 0.0 0.5037533591086556 2.2217551599152711E-4 64-65 0.0 0.0015996637151389952 0.0 0.5093151528589768 2.2217551599152711E-4 66-67 0.0 0.001614475416205097 0.0 0.5139956503958649 2.2217551599152711E-4 68-69 0.0 0.0016366929678042499 0.0 0.5184539724167616 2.2217551599152711E-4 70-71 0.0 0.0016440988183373006 0.0 0.5227863949785962 2.2958136652457802E-4 72-73 0.0 0.0016440988183373006 0.0 0.5263337973839277 2.666106191898325E-4 74-75 0.0 0.0016663163699364534 0.0 0.5290295269779584 2.666106191898325E-4 76-77 0.0 0.001769998277399166 0.0 0.5313327464937371 2.666106191898325E-4 78-79 0.0 0.0018218392311305223 0.0 0.5332582676323303 2.666106191898325E-4 80-81 0.0 0.0018366509321966241 0.0 0.5337396479169787 2.740164697228834E-4 82-83 0.0 0.001844056782729675 0.0 0.5340803170414989 3.184515729211889E-4 84-85 0.0 0.0018662743343288279 0.0 0.5342728691553583 3.4066912452034156E-4 86-87 0.0 0.0018958977364610314 0.0 0.5344209861660193 3.4066912452034156E-4 88 0.0 0.0019403328396593368 0.0 0.5344357978670854 3.4066912452034156E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8420 0.0 38.195465 1 GTATCAA 13760 0.0 30.80198 1 TCAACGC 15810 0.0 26.641537 4 ATCAACG 15815 0.0 26.633114 3 CAACGCA 16005 0.0 26.344358 5 AACGCAG 16585 0.0 25.42099 6 TATCAAC 17080 0.0 24.840397 2 ACGCAGA 19195 0.0 22.032993 7 CGCAGAG 19765 0.0 21.353191 8 AGAGTAC 19655 0.0 18.146883 10-11 GAGTACT 11825 0.0 18.123745 12-13 GCAGAGT 24045 0.0 17.47935 9 CGAGACC 6240 0.0 17.42197 86-87 AGACCGA 6575 0.0 16.863033 88-89 GTACATG 17135 0.0 16.515646 1 TACATGG 17520 0.0 16.453232 2 ACCGAGG 6750 0.0 16.34407 90-91 GAGACCG 6495 0.0 16.328531 88-89 GACCGAG 6485 0.0 16.25772 90-91 CAGAGTA 22920 0.0 16.250908 10-11 >>END_MODULE