##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138987_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9698447 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.7174708486833 25.0 18.0 32.0 18.0 33.0 2 26.81551922694427 28.0 18.0 32.0 18.0 33.0 3 29.025075870394506 31.0 27.0 33.0 18.0 33.0 4 29.708932058916236 31.0 29.0 33.0 25.0 33.0 5 31.11985465301816 32.0 32.0 33.0 28.0 33.0 6 36.085708361348985 37.0 36.0 38.0 33.0 38.0 7 36.201392449739636 38.0 37.0 38.0 33.0 38.0 8 36.86237095485494 38.0 38.0 38.0 35.0 38.0 9 37.01272708919274 38.0 38.0 38.0 36.0 38.0 10-11 37.084405884777226 38.0 38.0 38.0 36.0 38.0 12-13 37.12997287091428 38.0 38.0 38.0 36.0 38.0 14-15 37.151787136641566 38.0 38.0 38.0 36.0 38.0 16-17 37.127161802296804 38.0 38.0 38.0 36.0 38.0 18-19 37.16385252195532 38.0 38.0 38.0 36.0 38.0 20-21 37.13025372482201 38.0 38.0 38.0 36.0 38.0 22-23 37.17156619680358 38.0 38.0 38.0 36.0 38.0 24-25 37.17915977092325 38.0 38.0 38.0 36.0 38.0 26-27 37.112354783143005 38.0 38.0 38.0 36.0 38.0 28-29 37.0995441851273 38.0 38.0 38.0 36.0 38.0 30-31 36.968268972431986 38.0 38.0 38.0 36.0 38.0 32-33 37.06498879992895 38.0 38.0 38.0 36.0 38.0 34-35 37.08566861321512 38.0 38.0 38.0 36.0 38.0 36-37 37.01196977778367 38.0 38.0 38.0 36.0 38.0 38-39 37.05329421287341 38.0 38.0 38.0 36.0 38.0 40-41 36.96838725089103 38.0 38.0 38.0 36.0 38.0 42-43 36.94992889896386 38.0 38.0 38.0 36.0 38.0 44-45 36.95035438598276 38.0 38.0 38.0 36.0 38.0 46-47 36.912068436961846 38.0 38.0 38.0 35.5 38.0 48-49 36.87871212808065 38.0 38.0 38.0 35.0 38.0 50-51 36.896579375189006 38.0 38.0 38.0 35.0 38.0 52-53 36.805146327108076 38.0 38.0 38.0 35.0 38.0 54-55 36.794027455160354 38.0 38.0 38.0 35.0 38.0 56-57 36.801913112685966 38.0 38.0 38.0 35.0 38.0 58-59 36.822318758155006 38.0 38.0 38.0 35.0 38.0 60-61 36.81720972251547 38.0 38.0 38.0 35.0 38.0 62-63 36.819199726479056 38.0 38.0 38.0 35.0 38.0 64-65 36.77254424757216 38.0 38.0 38.0 35.0 38.0 66-67 36.7739090766644 38.0 38.0 38.0 35.0 38.0 68-69 36.788758025993005 38.0 38.0 38.0 35.0 38.0 70-71 36.70538826195818 38.0 38.0 38.0 34.5 38.0 72-73 36.65529731125245 38.0 38.0 38.0 34.0 38.0 74-75 36.70175394286228 38.0 38.0 38.0 34.5 38.0 76-77 36.673868283135754 38.0 38.0 38.0 34.0 38.0 78-79 36.687897236760854 38.0 38.0 38.0 34.0 38.0 80-81 36.7102852320311 38.0 38.0 38.0 34.0 38.0 82-83 36.5675426489119 38.0 38.0 38.0 34.0 38.0 84-85 36.59950787390038 38.0 38.0 38.0 34.0 38.0 86-87 36.59794440989194 38.0 38.0 38.0 34.0 38.0 88-89 36.54038511086335 38.0 38.0 38.0 34.0 38.0 90-91 36.544513415766275 38.0 38.0 38.0 34.0 38.0 92-93 36.589355737137794 38.0 38.0 38.0 34.0 38.0 94-95 36.466114876752464 38.0 38.0 38.0 34.0 38.0 96-97 36.39377820883734 38.0 38.0 38.0 34.0 38.0 98-99 36.473136622809896 38.0 38.0 38.0 34.0 38.0 100 34.85239334843072 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 6.0 18 47.0 19 51.0 20 99.0 21 327.0 22 1060.0 23 2956.0 24 7187.0 25 13954.0 26 24083.0 27 38465.0 28 57301.0 29 81216.0 30 110028.0 31 146892.0 32 196629.0 33 271258.0 34 413219.0 35 769672.0 36 2233014.0 37 5330983.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.22913575750839 23.7154464008516 14.853398693625897 24.20201914801411 2 13.605714399429106 21.57997048393418 40.37971233951168 24.43460277712504 3 16.299011584019585 26.598536858530032 32.54840697691084 24.554044580539543 4 12.302516062623223 19.024355136446072 40.2518155741842 28.42131322674651 5 13.016532291742926 37.46113369883863 36.22629019002907 13.296043819389377 6 28.17757898302254 39.60158561501354 19.57282842765 12.648006974313924 7 24.79710411367923 33.357144705745156 24.981040779003074 16.86471040157254 8 23.36574092738765 37.420826241562175 22.193852273461925 17.01958055758824 9 25.066008004375963 16.840328526892716 22.244504144736606 35.84915932399472 10-11 23.216505694159075 27.369660317780774 30.033777572842336 19.380056415217815 12-13 24.08733583840794 24.980344791284626 30.07092785061361 20.86139151969382 14-15 21.540309494911916 26.351342642796315 27.40210365638952 24.706244205902244 16-17 21.125160554055718 29.29692764212662 28.17256721617389 21.405344587643775 18-19 21.132739086989908 28.777488808259715 29.522432818367722 20.567339286382655 20-21 22.07403645756134 27.868909508275326 29.151283541768436 20.9057704923949 22-23 21.79644755529875 27.794513817849726 28.98295340268136 21.426085224170162 24-25 21.56485710795752 27.90737448552796 29.085431220161162 21.44233718635336 26-27 21.510239449913698 28.096628130703248 29.021333459293018 21.37179896009003 28-29 21.423896544419506 28.12782410215827 29.077668898878105 21.370610454544117 30-31 21.698648740562955 27.945936204981976 29.006282812972035 21.349132241483037 32-33 21.57790832248331 28.055448777564223 28.913070659474656 21.453572240477815 34-35 21.643083606036058 28.064824544357673 28.92601745694178 21.366074392664494 36-37 21.609192575701428 28.02488587179073 28.990840119443632 21.375081433064214 38-39 21.467965914491096 28.098222727588944 29.009183652072185 21.424627705847776 40-41 21.75689549445136 27.935683656870715 28.97417681575781 21.333244032920113 42-43 21.57089808528197 27.99679603713539 28.81577470424343 21.616531173339204 44-45 21.632156699453784 28.015772130776867 28.731886686974118 21.620184482795235 46-47 21.673394214888127 27.992451334656366 28.704017847581802 21.630136602873705 48-49 21.574888362459365 28.169432323819187 28.6912545957772 21.56442471794425 50-51 21.56707782290559 28.230571091054635 28.513886747217356 21.68846433882242 52-53 21.65783678834426 28.094073396845705 28.384770571456574 21.863319243353466 54-55 21.7316182960911 27.860460255679442 28.66113303067633 21.74678841755313 56-57 21.60874150503001 27.67749573601058 28.731783354648126 21.981979404311282 58-59 21.478871439551916 27.55350777767883 28.80982775546727 22.15779302730198 60-61 21.665535075653665 27.743219659307204 28.998169142153802 21.593076122885325 62-63 21.330386807434724 27.92118973737458 28.9783160333497 21.77010742184099 64-65 21.21298841041512 28.164904528861847 28.696533596640293 21.92557346408274 66-67 21.250208574026612 28.580033542840482 28.336821748293 21.832936134839905 68-69 21.293945792026754 28.564382020979412 28.186948929484483 21.954723257509354 70-71 21.383293466579474 28.15185951130686 28.151730692068476 22.313116330045194 72-73 21.513295102004143 27.8300262827219 28.147650561256444 22.50902805401752 74-75 21.534671197930773 27.869133481024704 28.249966397597277 22.346228923447246 76-77 21.827642261889725 27.76194847701539 27.774650495398767 22.635758765696117 78-79 21.977115571337638 27.856107724968926 27.440025103574484 22.72675160011896 80-81 21.87442799769682 28.0631558680688 27.528255275844955 22.534160858389424 82-83 21.827320404416074 27.944102036613632 27.607053411452465 22.62152414751783 84-85 21.936424571468283 28.16846265596788 27.58344066333195 22.311672109231885 86-87 22.201546643629815 28.088424416860253 27.6503835990623 22.059645340447638 88-89 22.03829502905337 28.19882823296228 27.884572259759977 21.878304478224376 90-91 22.035378794897458 27.905962330863264 27.803893277360697 22.254765596878574 92-93 22.043670104754025 27.585943446280492 27.941537247090935 22.42884920187455 94-95 21.525651380382268 27.92187125777794 28.352281747727144 22.20019561411265 96-97 21.631172847361775 27.883705886933217 28.534011655328516 21.951109610376488 98-99 22.747807794103977 29.736655874310348 28.86972352867253 18.645812802913145 100 21.70121355894144 30.782562924903335 22.734249169364077 24.78197434679115 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 854.0 1 994.5 2 1706.0 3 2484.0 4 3096.5 5 4127.0 6 5023.5 7 5992.0 8 6999.5 9 7717.5 10 8066.0 11 8415.5 12 9642.0 13 11896.0 14 15851.0 15 20397.0 16 23432.5 17 24817.0 18 25047.5 19 24277.5 20 23418.0 21 23759.0 22 26838.0 23 33591.0 24 44179.0 25 58416.0 26 76788.5 27 98551.5 28 121206.0 29 146193.0 30 171740.0 31 196729.5 32 223568.0 33 248122.5 34 270176.0 35 291962.0 36 315392.0 37 336974.0 38 352632.0 39 365419.5 40 379049.5 41 390895.5 42 399490.0 43 406789.5 44 410179.5 45 413445.5 46 413154.5 47 407838.0 48 400118.5 49 386231.0 50 369656.0 51 349882.0 52 326893.0 53 301955.0 54 275279.5 55 248334.5 56 221516.0 57 195001.5 58 168592.0 59 142081.5 60 115082.0 61 89732.5 62 68324.5 63 51036.0 64 36615.5 65 25788.5 66 18208.5 67 13311.0 68 9918.5 69 7031.5 70 4906.5 71 3396.5 72 2312.0 73 1555.0 74 981.0 75 623.5 76 407.0 77 241.0 78 140.5 79 75.5 80 46.5 81 33.5 82 24.0 83 16.5 84 13.0 85 11.0 86 8.5 87 5.5 88 3.5 89 3.0 90 2.5 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.004712094627108855 6 2.0621858324327596E-5 7 0.0 8 0.0 9 2.0621858324327596E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.156128073683958E-6 26-27 0.0 28-29 4.126304744007407E-5 30-31 0.0 32-33 4.6500071377609564E-5 34-35 0.0 36-37 5.447431816052368E-4 38-39 5.203288040965695E-5 40-41 2.505695105662292E-4 42-43 9.436980812049053E-5 44-45 7.95682364021836E-4 46-47 0.0 48-49 8.533036156127469E-5 50-51 1.6090468767917407E-5 52-53 1.343231480746684E-4 54-55 0.0022577275563604054 56-57 0.0011778168997041046 58-59 1.5065959578138065E-4 60-61 4.055219326807638E-4 62-63 1.1427379249740313E-4 64-65 8.160725767847616E-4 66-67 0.0013844986675165612 68-69 3.390272496764513E-4 70-71 7.449056991390851E-4 72-73 1.7496198104371594E-4 74-75 1.8194161266222653E-4 76-77 1.145874328181043E-5 78-79 0.0015420925421863383 80-81 0.0 82-83 9.042843760622773E-4 84-85 1.1838941617561697E-4 86-87 1.1937016718687191E-5 88-89 9.6321731922533E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 2.702320539207215E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 97.0 20-21 416.0 22-23 592.0 24-25 813.0 26-27 1957.0 28-29 3302.0 30-31 10708.0 32-33 14199.0 34-35 21027.0 36-37 34935.0 38-39 22066.0 40-41 40597.0 42-43 45663.0 44-45 55518.0 46-47 57549.0 48-49 54100.0 50-51 27802.0 52-53 4625.0 54-55 4488.0 56-57 4458.0 58-59 31119.0 60-61 59523.0 62-63 58453.0 64-65 63228.0 66-67 67710.0 68-69 68560.0 70-71 69737.0 72-73 64823.0 74-75 66423.0 76-77 69050.0 78-79 71496.0 80-81 71160.0 82-83 68427.0 84-85 68865.0 86-87 71288.0 88-89 74070.0 90-91 76325.0 92-93 76634.0 94-95 94570.0 96-97 330448.0 98-99 760054.0 100-101 6911572.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.56816834034562 #Duplication Level Percentage of deduplicated Percentage of total 1 89.07020652320686 75.32504219363908 2 7.619139703632966 12.886733781308873 3 1.8857320583864596 4.784187184752377 4 0.6709329966122839 2.2695829841040065 5 0.3074825959379871 1.3001619967505083 6 0.15711562481352878 0.7972188364877453 7 0.09027449583251283 0.5344044132282643 8 0.05319033239332639 0.3598567187134212 9 0.03400458857033767 0.2588135193504457 >10 0.11059311688424406 1.37126180888043 >50 0.0011038234558822298 0.06295842520188417 >100 2.0493718831171464E-4 0.03683509871044886 >500 1.920308524456332E-5 0.012943038872561416 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0310929162163798E-5 0.0 0.0 0.0 3 0.0 1.0310929162163798E-5 0.0 0.0 0.0 4 0.0 3.0932787486491395E-5 0.0 0.0 0.0 5 0.0 5.155464581081899E-5 0.0 0.0 0.0 6 3.0932787486491395E-5 5.155464581081899E-5 0.0 0.0 0.0 7 3.0932787486491395E-5 5.155464581081899E-5 0.0 0.0 0.0 8 3.0932787486491395E-5 5.155464581081899E-5 0.0 0.0 1.0310929162163798E-5 9 3.0932787486491395E-5 1.2373114994596558E-4 0.0 0.0 1.0310929162163798E-5 10-11 3.6088252067573294E-5 1.2373114994596558E-4 0.0 5.155464581081899E-6 1.0310929162163798E-5 12-13 4.124371664865519E-5 1.2373114994596558E-4 0.0 2.5777322905409497E-5 1.0310929162163798E-5 14-15 4.124371664865519E-5 1.5466393743245697E-4 0.0 3.0932787486491395E-5 1.5466393743245698E-5 16-17 6.186557497298279E-5 1.5466393743245697E-4 0.0 3.0932787486491395E-5 2.0621858324327596E-5 18-19 6.186557497298279E-5 1.7528579575678456E-4 0.0 6.186557497298279E-5 2.0621858324327596E-5 20-21 6.186557497298279E-5 2.2684044156760354E-4 0.0 1.1857568536488368E-4 3.0932787486491395E-5 22-23 7.217650413514659E-5 3.2994973318924153E-4 0.0 1.7013033117570266E-4 4.124371664865519E-5 24-25 8.248743329731038E-5 3.608825206757329E-4 0.0 2.2168497698652165E-4 6.186557497298279E-5 26-27 8.248743329731038E-5 3.711934498378967E-4 0.0 2.4746229989193116E-4 6.186557497298279E-5 28-29 8.248743329731038E-5 3.711934498378967E-4 0.0 4.7430274145953473E-4 6.186557497298279E-5 30-31 8.248743329731038E-5 4.330590248108795E-4 0.0 0.0012527778932029015 6.186557497298279E-5 32-33 8.248743329731038E-5 4.382144893919614E-4 0.0 0.0032324762923383508 6.186557497298279E-5 34-35 9.279836245947418E-5 4.8461367062169853E-4 0.0 0.0062896667889199166 6.186557497298279E-5 36-37 9.279836245947418E-5 5.310128518514356E-4 5.155464581081899E-6 0.014512632795745545 6.702103955406469E-5 38-39 9.279836245947418E-5 5.722565685000908E-4 1.0310929162163798E-5 0.12444775952273596 7.733196871622849E-5 40-41 9.279836245947418E-5 5.877229622433365E-4 1.0310929162163798E-5 0.24205421754637624 8.248743329731038E-5 42-43 9.279836245947418E-5 6.031893559865822E-4 1.0310929162163798E-5 0.26427942535542026 8.248743329731038E-5 44-45 9.279836245947418E-5 6.547440017974012E-4 1.0310929162163798E-5 0.2955215407167766 9.279836245947418E-5 46-47 9.279836245947418E-5 6.908322538649745E-4 1.0310929162163798E-5 0.3312746875865796 9.279836245947418E-5 48-49 9.279836245947418E-5 6.908322538649745E-4 1.0310929162163798E-5 0.3641046860389091 1.1857568536488368E-4 50-51 9.279836245947418E-5 7.836306163244486E-4 1.0310929162163798E-5 0.39943508481306333 1.2373114994596558E-4 52-53 9.795382704055608E-5 7.939415454866124E-4 1.0310929162163798E-5 0.7677620963438786 1.3919754368921128E-4 54-55 1.0310929162163798E-4 8.042524746487762E-4 1.0310929162163798E-5 1.2695898632018094 1.5466393743245697E-4 56-57 1.0310929162163798E-4 8.248743329731038E-4 1.0310929162163798E-5 1.824462205134492 1.5981940201353887E-4 58-59 1.0310929162163798E-4 8.351852621352676E-4 1.0310929162163798E-5 2.4066997530635574 1.7013033117570266E-4 60-61 1.0310929162163798E-4 8.506516558785133E-4 1.0310929162163798E-5 2.5638383134949336 1.7528579575678456E-4 62-63 1.0310929162163798E-4 8.970508371082504E-4 1.0310929162163798E-5 2.5711745395938133 1.7528579575678456E-4 64-65 1.0310929162163798E-4 0.0010104710578920522 1.0310929162163798E-5 2.5767939959871926 1.7528579575678456E-4 66-67 1.0310929162163798E-4 0.001025937451635298 1.0310929162163798E-5 2.581346271212288 1.7528579575678456E-4 68-69 1.0310929162163798E-4 0.0010671811682839531 1.0310929162163798E-5 2.585553130310451 1.7528579575678456E-4 70-71 1.0310929162163798E-4 0.0010929584911893626 1.0310929162163798E-5 2.5892495984150865 1.8559672491894836E-4 72-73 1.1342022078380177E-4 0.0011084248849326083 1.0310929162163798E-5 2.592306788911668 2.2684044156760354E-4 74-75 1.1342022078380177E-4 0.0011393576724190997 1.0310929162163798E-5 2.594925764918858 2.2684044156760354E-4 76-77 1.1342022078380177E-4 0.0011909123182299187 1.0310929162163798E-5 2.5975705182489524 2.2684044156760354E-4 78-79 1.1342022078380177E-4 0.0012166896411353282 1.0310929162163798E-5 2.599117157623277 2.3715137072976737E-4 80-81 1.1342022078380177E-4 0.0012166896411353282 1.0310929162163798E-5 2.5996894141917775 2.4746229989193116E-4 82-83 1.1342022078380177E-4 0.0012166896411353282 1.0310929162163798E-5 2.6001946497207236 2.5777322905409496E-4 84-85 1.1342022078380177E-4 0.0012166896411353282 1.0310929162163798E-5 2.6003905573748045 2.5777322905409496E-4 86-87 1.1342022078380177E-4 0.001227000570297492 1.0310929162163798E-5 2.6005039775955883 2.5777322905409496E-4 88 1.1342022078380177E-4 0.0012682442869461472 1.0310929162163798E-5 2.6005194439893313 2.5777322905409496E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12495 0.0 39.603565 1 ATCTCGT 8365 0.0 33.401722 94 GTATCAA 19805 0.0 30.072369 1 TATCTCG 9500 0.0 28.561441 94 TCAACGC 22245 0.0 26.595045 4 ATCAACG 22325 0.0 26.440372 3 CAACGCA 22710 0.0 26.089409 5 GCCGTCT 4550 0.0 25.652054 90-91 AACGCAG 23435 0.0 25.469376 6 TATCAAC 24515 0.0 24.312666 2 ATGCCGT 4885 0.0 23.976562 88-89 TATGCCG 4580 0.0 23.608438 86-87 TGCCGTC 4710 0.0 23.17575 88-89 CCGTCTT 4805 0.0 23.112635 90-91 ACGCAGA 27545 0.0 21.637003 7 CGCAGAG 27740 0.0 21.437126 8 TCGTATG 5490 0.0 21.080091 84-85 TCTCGTA 5275 0.0 20.819206 82-83 CGTATGC 5235 0.0 20.613205 84-85 CTCGTAT 5370 0.0 19.680979 82-83 >>END_MODULE