##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138985_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7065148 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.10305077827103 30.0 18.0 33.0 18.0 33.0 2 30.52373566696692 32.0 29.0 33.0 27.0 33.0 3 31.718709218830234 33.0 31.0 33.0 29.0 33.0 4 32.27420826853167 33.0 33.0 33.0 31.0 34.0 5 32.747837554146074 33.0 33.0 34.0 32.0 34.0 6 36.23895890079019 38.0 37.0 38.0 33.0 38.0 7 36.65902879883054 38.0 37.0 38.0 34.0 38.0 8 36.5018731383971 38.0 37.0 38.0 34.0 38.0 9 36.861907209870196 38.0 38.0 38.0 35.0 38.0 10-11 37.02438016868153 38.0 38.0 38.0 35.5 38.0 12-13 37.09443652135808 38.0 38.0 38.0 36.0 38.0 14-15 37.078660701799876 38.0 38.0 38.0 36.0 38.0 16-17 37.04896641938711 38.0 38.0 38.0 36.0 38.0 18-19 37.08773220320367 38.0 38.0 38.0 36.0 38.0 20-21 37.06761059319362 38.0 38.0 38.0 36.0 38.0 22-23 37.10736591161536 38.0 38.0 38.0 36.0 38.0 24-25 37.116420783074396 38.0 38.0 38.0 36.0 38.0 26-27 37.05333461050334 38.0 38.0 38.0 36.0 38.0 28-29 37.040969520398946 38.0 38.0 38.0 36.0 38.0 30-31 36.91190678471625 38.0 38.0 38.0 35.5 38.0 32-33 37.01316567034691 38.0 38.0 38.0 36.0 38.0 34-35 37.02574964707472 38.0 38.0 38.0 36.0 38.0 36-37 36.947646694952525 38.0 38.0 38.0 36.0 38.0 38-39 36.98742625785468 38.0 38.0 38.0 36.0 38.0 40-41 36.903308896842844 38.0 38.0 38.0 35.5 38.0 42-43 36.88636985066344 38.0 38.0 38.0 35.0 38.0 44-45 36.87840769437243 38.0 38.0 38.0 35.0 38.0 46-47 36.836435309158546 38.0 38.0 38.0 35.0 38.0 48-49 36.797854472767824 38.0 38.0 38.0 35.0 38.0 50-51 36.80849970063389 38.0 38.0 38.0 35.0 38.0 52-53 36.71367265928208 38.0 38.0 38.0 35.0 38.0 54-55 36.700652561587034 38.0 38.0 38.0 35.0 38.0 56-57 36.70197632874444 38.0 38.0 38.0 34.5 38.0 58-59 36.71767639827861 38.0 38.0 38.0 35.0 38.0 60-61 36.71414227462566 38.0 38.0 38.0 35.0 38.0 62-63 36.71975664959574 38.0 38.0 38.0 34.5 38.0 64-65 36.67258643595814 38.0 38.0 38.0 34.0 38.0 66-67 36.678856593915825 38.0 38.0 38.0 34.0 38.0 68-69 36.68915427429883 38.0 38.0 38.0 34.0 38.0 70-71 36.598427061793856 38.0 38.0 38.0 34.0 38.0 72-73 36.552780739082635 38.0 38.0 38.0 34.0 38.0 74-75 36.60244473901533 38.0 38.0 38.0 34.0 38.0 76-77 36.578306983953354 38.0 38.0 38.0 34.0 38.0 78-79 36.593294923863894 38.0 38.0 38.0 34.0 38.0 80-81 36.61361908247092 38.0 38.0 38.0 34.0 38.0 82-83 36.47846799869528 38.0 38.0 38.0 34.0 38.0 84-85 36.49176278403023 38.0 38.0 38.0 34.0 38.0 86-87 36.491107382938715 38.0 38.0 38.0 34.0 38.0 88-89 36.436566367900014 38.0 38.0 38.0 34.0 38.0 90-91 36.4305096013021 38.0 38.0 38.0 34.0 38.0 92-93 36.474316578763606 38.0 38.0 38.0 34.0 38.0 94-95 36.374272414315165 38.0 38.0 38.0 34.0 38.0 96-97 36.33190102479219 38.0 37.5 38.0 34.0 38.0 98-99 36.40472163923812 38.0 37.0 38.0 34.0 38.0 100 34.77280675345686 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 22.0 20 99.0 21 326.0 22 866.0 23 2428.0 24 5737.0 25 11270.0 26 19556.0 27 30660.0 28 45162.0 29 63565.0 30 85435.0 31 112973.0 32 148467.0 33 199147.0 34 290536.0 35 499657.0 36 1322621.0 37 4226614.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.25075766282603 18.434206898425906 14.368913432528235 21.946122006219827 2 14.169271471737039 21.13338602390212 42.755947929187045 21.9413945751738 3 16.85974589633508 27.69094150610858 31.069002376171028 24.38031022138531 4 11.827338931894985 19.454652613080434 39.86150042433648 28.856508030688104 5 13.223005035403524 37.63789680784433 36.18583222162853 12.95326593512362 6 28.325567748271908 38.951263151354105 19.90118535396362 12.821983746410373 7 25.17944422395681 33.3037326323525 24.77306915580537 16.74375398788532 8 23.66624166967203 36.987632813919824 22.155162213162413 17.190963303245734 9 25.411484656797 16.962036747142452 22.169188812463663 35.45728978359689 10-11 23.452771265371936 27.232670851339563 29.812708806666187 19.501849076622317 12-13 24.35125916682849 25.024670396147396 29.78617716146923 20.83789327555488 14-15 21.732531293045806 26.1602233951787 27.419602533450117 24.68764277832538 16-17 21.192889377547363 29.140005276605667 28.123204213131842 21.543901132715124 18-19 21.231437756151745 28.461498612626375 29.606216317053796 20.700847314168083 20-21 22.18201973682069 27.57720412921657 29.377469632639112 20.863306501323624 22-23 21.97938991854526 27.506285171072793 29.132570311005473 21.381754599376475 24-25 21.679084538493278 27.65601964210766 29.23779959133205 21.427096228067008 26-27 21.53923318997977 27.830901357851307 29.233325176688567 21.396540275480355 28-29 21.550547117865477 27.840011361695044 29.247522045320334 21.36191947511914 30-31 21.804824769407894 27.61516996461082 29.211469242072003 21.368536023909286 32-33 21.68569633052176 27.70847802712292 29.11570129712538 21.490124345229944 34-35 21.7419732772438 27.750714628635357 29.10787322625116 21.39943886786968 36-37 21.76751999072349 27.730648140616626 29.036660308059353 21.46517156060053 38-39 21.59172673508905 27.82280948110908 29.15964365865725 21.425820125144625 40-41 21.782028409183937 27.708124661229487 29.049339923517937 21.460507006068642 42-43 21.709710930116795 27.761501114581904 28.90338847327528 21.625399482026015 44-45 21.71660573575786 27.802005145427195 28.813325970218845 21.668063148596097 46-47 21.81035684342159 27.784988719704945 28.654716663039085 21.749937773834375 48-49 21.77192762754076 27.94279156289612 28.60062479863223 21.68465601093089 50-51 21.791073028905735 28.045439353562124 28.486441840999234 21.677045776532907 52-53 21.95196220803808 27.938442648702438 28.388197565057897 21.721397578201586 54-55 21.937954239207162 27.859279687126747 28.414128328620958 21.78863774504513 56-57 21.86839860032098 27.95629573669196 28.37412473079482 21.801180932192242 58-59 21.79071838026814 27.93196570739836 28.50487046186948 21.772445450464023 60-61 21.862750314833537 27.93856751368554 28.479442509983972 21.71923966149695 62-63 21.82669616971198 27.971300422318524 28.53514775018848 21.66685565778102 64-65 21.89914674712285 27.928578271307913 28.399964580849996 21.772310400719245 66-67 21.846725063984714 27.98715240357544 28.284942367142374 21.881180165297476 68-69 21.820671498980854 27.990789020853562 28.32473946745171 21.86380001271387 70-71 21.873514759273327 27.836375287835363 28.31191272452263 21.978197228368682 72-73 21.904827195029444 27.84155192754253 28.27695431627104 21.97666656115699 74-75 21.85186615704333 27.940990515319715 28.18960257489173 22.01754075274523 76-77 22.009322749257322 27.876753264508686 28.091591735518367 22.022332250715625 78-79 21.943848639157927 27.903049554145493 28.0806390191844 22.07246278751218 80-81 21.90136990260919 27.91004328644584 28.135729949861826 22.052856861083143 82-83 21.991387461387912 27.883081335177007 28.144337614428494 21.981193589006583 84-85 22.059731985454192 27.93643160185467 28.050396853724134 21.953439558967 86-87 21.982028219287347 27.951590642604273 28.094346502552998 21.972034635555385 88-89 22.05584408469492 27.952144319590534 28.021394144300054 21.970617451414494 90-91 22.065840880822993 28.005401751865765 28.019933191385316 21.908824175925922 92-93 22.12056420387691 27.925831408332275 28.06459418508327 21.889010202707546 94-95 21.960608751586474 28.04860543238214 28.041646712800528 21.949139103230856 96-97 22.024006740440754 28.125222165882263 28.133405414559203 21.71736567911778 98-99 23.05651695424296 30.021625241446404 28.419626665112922 18.50223113919771 100 21.911229101982023 30.906309774692176 22.441904194251087 24.740556929074714 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 824.0 1 864.0 2 1500.0 3 2276.5 4 2977.0 5 4352.0 6 5501.0 7 6564.0 8 7749.5 9 8328.0 10 8076.0 11 7800.0 12 8605.0 13 10462.5 14 13720.0 15 17643.0 16 21079.0 17 23508.5 18 24080.5 19 23035.0 20 21585.5 21 21070.0 22 22755.5 23 27199.0 24 34772.0 25 45501.0 26 58821.0 27 73952.5 28 90855.5 29 109857.0 30 128112.0 31 145611.5 32 163828.5 33 180726.5 34 196697.5 35 212170.5 36 227167.5 37 241778.0 38 253982.5 39 262821.0 40 272001.0 41 280091.5 42 284244.0 43 287457.0 44 289671.5 45 292255.5 46 293305.5 47 292377.0 48 289293.5 49 281364.0 50 272068.5 51 261075.5 52 244275.0 53 224626.5 54 206464.5 55 189321.0 56 171324.5 57 152796.0 58 134475.0 59 114728.5 60 93983.5 61 75291.5 62 59113.5 63 45291.5 64 34418.5 65 25045.0 66 17910.0 67 13001.5 68 8903.5 69 5981.0 70 4244.0 71 3010.5 72 2009.5 73 1210.5 74 767.5 75 493.0 76 298.5 77 179.5 78 121.0 79 86.0 80 52.0 81 35.5 82 28.0 83 21.0 84 16.0 85 12.5 86 11.0 87 7.0 88 4.0 89 4.5 90 4.5 91 3.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0024486394340217646 6 1.4153985167755862E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 2.123945531841625E-5 30-31 0.0 32-33 2.1276321114152996E-5 34-35 0.0 36-37 4.843363488019442E-4 38-39 4.290131589061165E-5 40-41 2.1543388456162003E-4 42-43 5.771294561968842E-5 44-45 6.673473125669841E-4 46-47 0.0 48-49 6.61426551557869E-5 50-51 0.0 52-53 9.664465374041946E-5 54-55 0.0021525867066409994 56-57 0.001082446816907278 58-59 1.5126574638603442E-4 60-61 3.9584789057607215E-4 62-63 9.960332592361208E-5 64-65 7.481776667423843E-4 66-67 0.0012197034784311755 68-69 3.6012061848680763E-4 70-71 6.076059960769169E-4 72-73 1.2724769128946608E-4 74-75 1.282123401492616E-4 76-77 0.0 78-79 0.0014574320730806921 80-81 0.0 82-83 8.94336613395672E-4 84-85 1.5028362276706713E-4 86-87 0.0 88-89 4.246890426829476E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 3.106429652592884E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 50.0 20-21 168.0 22-23 403.0 24-25 558.0 26-27 1141.0 28-29 2498.0 30-31 7825.0 32-33 10799.0 34-35 16029.0 36-37 25798.0 38-39 29505.0 40-41 31045.0 42-43 35886.0 44-45 43840.0 46-47 45478.0 48-49 42263.0 50-51 37580.0 52-53 35319.0 54-55 38061.0 56-57 39526.0 58-59 42245.0 60-61 42510.0 62-63 43133.0 64-65 45350.0 66-67 48906.0 68-69 50127.0 70-71 50286.0 72-73 47456.0 74-75 47502.0 76-77 50063.0 78-79 51835.0 80-81 51390.0 82-83 49694.0 84-85 49294.0 86-87 51705.0 88-89 54032.0 90-91 54588.0 92-93 56288.0 94-95 68455.0 96-97 225243.0 98-99 508689.0 100-101 4932585.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.24939367669037 #Duplication Level Percentage of deduplicated Percentage of total 1 91.24847233843757 79.61373885452932 2 6.243194083857867 10.894297968449985 3 1.4169007169577565 3.7087118536389636 4 0.5091991169812006 1.7770925686926353 5 0.22491118026010917 0.9811682054401669 6 0.10954655199648135 0.5734722144639018 7 0.0662801137857321 0.4048029818439021 8 0.04879697590782679 0.3406005248971164 9 0.029088153111008104 0.22841313498991725 >10 0.10197508721394118 1.3485594221128443 >50 0.0012431202815603578 0.06670634467125455 >100 3.678375450698345E-4 0.0480910471388368 >500 2.4723663861355967E-5 0.014344879131107902 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.4153985167755864E-5 0.0 0.0 0.0 3 0.0 1.4153985167755864E-5 0.0 0.0 0.0 4 0.0 4.246195550326759E-5 0.0 1.4153985167755864E-5 0.0 5 0.0 4.246195550326759E-5 0.0 1.4153985167755864E-5 0.0 6 5.6615940671023455E-5 4.246195550326759E-5 0.0 1.4153985167755864E-5 0.0 7 5.6615940671023455E-5 4.246195550326759E-5 0.0 1.4153985167755864E-5 0.0 8 5.6615940671023455E-5 7.076992583877931E-5 0.0 1.4153985167755864E-5 0.0 9 5.6615940671023455E-5 1.4153985167755862E-4 0.0 1.4153985167755864E-5 1.4153985167755864E-5 10-11 7.076992583877931E-5 1.4153985167755862E-4 0.0 1.4153985167755864E-5 1.4153985167755864E-5 12-13 7.076992583877931E-5 1.4153985167755862E-4 0.0 1.4153985167755864E-5 1.4153985167755864E-5 14-15 7.076992583877931E-5 1.9107879976470413E-4 0.0 1.4153985167755864E-5 2.1230977751633796E-5 16-17 9.200090359041312E-5 1.9815579234858208E-4 0.0 2.8307970335511728E-5 2.8307970335511728E-5 18-19 9.907789617429104E-5 2.1938677010021587E-4 0.0 4.246195550326759E-5 4.953894808714552E-5 20-21 9.907789617429104E-5 2.4061774785184966E-4 0.0 5.6615940671023455E-5 5.6615940671023455E-5 22-23 1.344628590936807E-4 2.972336885228731E-4 0.0 6.369293325490138E-5 5.6615940671023455E-5 24-25 1.556938368453145E-4 3.396956440261407E-4 0.0 1.0615488875816898E-4 5.6615940671023455E-5 26-27 1.840018071808262E-4 3.680036143616524E-4 0.0 1.344628590936807E-4 5.6615940671023455E-5 28-29 1.840018071808262E-4 3.680036143616524E-4 0.0 3.0431068110675104E-4 6.369293325490138E-5 30-31 1.840018071808262E-4 4.1046556986492E-4 0.0 8.492391100653518E-4 7.076992583877931E-5 32-33 1.9815579234858208E-4 4.1046556986492E-4 0.0 0.002484024396941154 7.076992583877931E-5 34-35 2.4061774785184966E-4 4.883124882875772E-4 0.0 0.0048123549570369935 7.076992583877931E-5 36-37 2.547717330196055E-4 5.803133918779904E-4 0.0 0.009129320433202533 7.784691842265725E-5 38-39 2.547717330196055E-4 6.22775347381258E-4 0.0 0.022865763038509596 9.907789617429104E-5 40-41 2.547717330196055E-4 6.935452732200373E-4 0.0 0.03890222823357699 1.1323188134204691E-4 42-43 2.760027107712393E-4 7.006222658039153E-4 0.0 0.04790416280026972 1.1323188134204691E-4 44-45 2.8307970335511725E-4 7.713921916426945E-4 0.0 0.058661191527764174 1.2738586650980275E-4 46-47 2.8307970335511725E-4 8.350851248975959E-4 0.0 0.07092561967562463 1.4861684426143655E-4 48-49 2.8307970335511725E-4 8.421621174814738E-4 0.0 0.08325374075673998 1.556938368453145E-4 50-51 3.11387673690629E-4 9.553939988235208E-4 0.0 0.09547570694909718 1.556938368453145E-4 52-53 3.2554165885838483E-4 9.624709914073987E-4 0.0 0.13279976583646938 1.6277082942919244E-4 54-55 3.2554165885838483E-4 9.695479839912766E-4 0.0 0.17909037432761493 1.6984782201307037E-4 56-57 3.3969564402614073E-4 9.766249765751544E-4 0.0 0.24223130216097383 1.9107879976470416E-4 58-59 3.3969564402614073E-4 9.978559543267883E-4 0.0 0.2893994577325203 2.1230977751633795E-4 60-61 3.538496291938966E-4 0.001019086932078422 0.0 0.30985904329251135 2.1230977751633795E-4 62-63 3.538496291938966E-4 0.0010686258801655677 0.0 0.325647813747143 2.2646376268409382E-4 64-65 3.538496291938966E-4 0.0012030887392592484 0.0 0.3311254060070645 2.2646376268409382E-4 66-67 3.7508060694553037E-4 0.0012172427244270044 0.0 0.33616422472678564 2.3354075526797174E-4 68-69 3.821575995294083E-4 0.001238473702178638 0.0 0.34109688855774856 2.4061774785184966E-4 70-71 3.821575995294083E-4 0.0012526276873463939 0.0 0.3453147761377398 2.4061774785184966E-4 72-73 3.821575995294083E-4 0.0012738586650980278 0.0 0.3486551166373302 2.476947404357276E-4 74-75 3.821575995294083E-4 0.0013517055835206848 0.0 0.35141514374504257 2.547717330196055E-4 76-77 3.821575995294083E-4 0.0014578604722788539 0.0 0.3540973239343323 2.547717330196055E-4 78-79 3.9631158469716416E-4 0.0015003224277821215 0.0 0.3559514959913083 2.547717330196055E-4 80-81 3.9631158469716416E-4 0.0015003224277821215 0.0 0.35656719434610573 2.6184872560348346E-4 82-83 3.9631158469716416E-4 0.0015073994203659994 0.0 0.3569988908937223 2.689257181873614E-4 84-85 4.246195550326759E-4 0.0015286303981176333 0.0 0.35722535465640637 2.689257181873614E-4 86-87 4.246195550326759E-4 0.0015357073907015112 0.0 0.35735981751550006 2.689257181873614E-4 88 4.3877354020043175E-4 0.001656016264627436 0.0 0.3573739715006678 2.689257181873614E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8040 0.0 53.103394 1 GTATCAA 15280 0.0 38.398598 1 ATCAACG 17425 0.0 32.694687 3 TCAACGC 17520 0.0 32.54232 4 CAACGCA 17795 0.0 32.13755 5 AACGCAG 18295 0.0 31.330156 6 TATCAAC 18770 0.0 30.6775 2 ACGCAGA 20585 0.0 27.823591 7 CGCAGAG 21760 0.0 26.42148 8 GTACATG 21365 0.0 23.007793 1 GCAGAGT 25830 0.0 22.207577 9 TACATGG 21235 0.0 22.100172 2 ACATGGG 21125 0.0 21.615955 3 GAGTACT 14250 0.0 20.372156 12-13 CAGAGTA 25115 0.0 19.806665 10-11 CATGGGG 15090 0.0 19.788202 4 AGAGTAC 23210 0.0 19.457436 10-11 GTACTTT 16515 0.0 17.538507 14-15 AGTACTT 16210 0.0 16.360384 12-13 GTGGTAT 4130 0.0 15.749824 1 >>END_MODULE