##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138980_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7269669 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.50304353609497 32.0 28.0 33.0 18.0 34.0 2 31.57363602111733 33.0 31.0 33.0 27.0 34.0 3 32.332709095833664 33.0 33.0 34.0 29.0 34.0 4 32.59023622671128 33.0 33.0 34.0 31.0 34.0 5 32.93937303060153 33.0 33.0 34.0 32.0 34.0 6 36.477682133808294 38.0 37.0 38.0 34.0 38.0 7 36.600997239351614 38.0 37.0 38.0 34.0 38.0 8 36.657441762479145 38.0 38.0 38.0 34.0 38.0 9 36.906706481409266 38.0 38.0 38.0 35.0 38.0 10-11 37.036349935602296 38.0 38.0 38.0 36.0 38.0 12-13 37.09855139209227 38.0 38.0 38.0 36.0 38.0 14-15 37.09936965493202 38.0 38.0 38.0 36.0 38.0 16-17 37.06123882669211 38.0 38.0 38.0 36.0 38.0 18-19 37.103206899791445 38.0 38.0 38.0 36.0 38.0 20-21 37.07567950169323 38.0 38.0 38.0 36.0 38.0 22-23 37.11640712432699 38.0 38.0 38.0 36.0 38.0 24-25 37.12446421410203 38.0 38.0 38.0 36.0 38.0 26-27 37.05951540053783 38.0 38.0 38.0 36.0 38.0 28-29 37.04681590372631 38.0 38.0 38.0 36.0 38.0 30-31 36.91719805030783 38.0 38.0 38.0 36.0 38.0 32-33 37.01591582885224 38.0 38.0 38.0 36.0 38.0 34-35 37.03091762846424 38.0 38.0 38.0 36.0 38.0 36-37 36.95511481131359 38.0 38.0 38.0 36.0 38.0 38-39 36.99125399399141 38.0 38.0 38.0 36.0 38.0 40-41 36.90656493774723 38.0 38.0 38.0 35.5 38.0 42-43 36.88797521628014 38.0 38.0 38.0 35.0 38.0 44-45 36.88596192279819 38.0 38.0 38.0 35.5 38.0 46-47 36.84317724973093 38.0 38.0 38.0 35.0 38.0 48-49 36.80749556663088 38.0 38.0 38.0 35.0 38.0 50-51 36.82360466617589 38.0 38.0 38.0 35.0 38.0 52-53 36.7345719337069 38.0 38.0 38.0 35.0 38.0 54-55 36.72034021690324 38.0 38.0 38.0 35.0 38.0 56-57 36.723653748171415 38.0 38.0 38.0 35.0 38.0 58-59 36.741967888478605 38.0 38.0 38.0 35.0 38.0 60-61 36.73728552021919 38.0 38.0 38.0 35.0 38.0 62-63 36.74057728280713 38.0 38.0 38.0 35.0 38.0 64-65 36.694310262063624 38.0 38.0 38.0 34.5 38.0 66-67 36.696997675486145 38.0 38.0 38.0 34.5 38.0 68-69 36.71029348852491 38.0 38.0 38.0 34.5 38.0 70-71 36.62603492143423 38.0 38.0 38.0 34.0 38.0 72-73 36.578453733224706 38.0 38.0 38.0 34.0 38.0 74-75 36.62572002344703 38.0 38.0 38.0 34.0 38.0 76-77 36.60149784849796 38.0 38.0 38.0 34.0 38.0 78-79 36.61805768231484 38.0 38.0 38.0 34.0 38.0 80-81 36.63771018388937 38.0 38.0 38.0 34.0 38.0 82-83 36.50673720092314 38.0 38.0 38.0 34.0 38.0 84-85 36.523806074806615 38.0 38.0 38.0 34.0 38.0 86-87 36.519275986899586 38.0 38.0 38.0 34.0 38.0 88-89 36.46773335030733 38.0 38.0 38.0 34.0 38.0 90-91 36.46396393971395 38.0 38.0 38.0 34.0 38.0 92-93 36.509737504871296 38.0 38.0 38.0 34.0 38.0 94-95 36.408830131039636 38.0 38.0 38.0 34.0 38.0 96-97 36.36790024599133 38.0 37.5 38.0 34.0 38.0 98-99 36.435836030912284 38.0 37.5 38.0 34.0 38.0 100 34.80444622829148 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 15.0 20 55.0 21 213.0 22 841.0 23 2524.0 24 6123.0 25 12234.0 26 20547.0 27 31991.0 28 47311.0 29 65774.0 30 88042.0 31 114280.0 32 148973.0 33 198504.0 34 284521.0 35 470738.0 36 1151510.0 37 4625469.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.09893283999588 19.640206452315777 15.218533333498401 26.042327374189938 2 13.1514240882219 21.03069617062345 43.35996590766374 22.457913833490906 3 16.172469475570345 27.637090492015524 31.45661790103511 24.73382213137902 4 11.485364739439992 19.66650751224024 40.136435372779694 28.71169237554007 5 13.003757382636474 37.65209943789203 36.454892837422285 12.889250342049202 6 28.06658735081336 39.539915778833944 19.88805817706418 12.505438693288513 7 24.95064080634208 33.467259651024 24.84484506791162 16.737254474722302 8 23.50215670066959 37.0652639067886 22.287672244774832 17.144907147766975 9 25.0568423560529 17.06794822926552 22.291887647673544 35.58332176700804 10-11 22.979883953450976 27.412912472356034 30.154921771541453 19.452281802651537 12-13 24.012902100494536 25.11007034845741 30.13482457041717 20.742202980630893 14-15 21.45903066563278 26.448680125601314 27.627523343910156 24.464765864855746 16-17 20.922658239322864 29.424530883042955 28.35091253810868 21.3018983395255 18-19 20.95294847674633 28.687832967360688 29.939203559336747 20.42001499655624 20-21 21.802388882675793 27.876946584752844 29.670458764461436 20.650205768109924 22-23 21.582191524067326 27.797962609436404 29.485920159959335 21.133925706536935 24-25 21.348029260243027 27.902033421115895 29.56031563202586 21.18962168661522 26-27 21.230600130112677 28.112318459483493 29.47255798128191 21.18452342912192 28-29 21.216523521051872 28.037163460109486 29.527030522931003 21.219282495907635 30-31 21.49538750447986 27.895065443000068 29.48364374103124 21.12590331148883 32-33 21.361200488523817 28.005197401877652 29.436597531220333 21.1970045783782 34-35 21.411503163529247 28.009014069124227 29.463033642586627 21.116449124759896 36-37 21.38579190683902 28.006607079198904 29.386875591582616 21.22072542237946 38-39 21.306001681254894 28.093514542633326 29.444609961047608 21.155873815064176 40-41 21.488199953702853 27.893851121005262 29.370049909991263 21.247899015300618 42-43 21.383172552339193 28.01578451719649 29.253758837489606 21.34728409297471 44-45 21.469065207597517 28.066993093301747 29.130750547629606 21.33319115147113 46-47 21.528646235487358 28.040705591666548 28.911323721413428 21.519324451432663 48-49 21.472464791632234 28.182481358616833 28.922136300536494 21.42291754921444 50-51 21.452569502292462 28.280367657913736 28.812192200846038 21.454870638947764 52-53 21.563745140253083 28.27474773661902 28.70252201552589 21.458985107602008 54-55 21.551506202429614 28.176942227167995 28.739633489553242 21.531918080849152 56-57 21.567025405481058 28.25539823675673 28.69207620655872 21.48550015120349 58-59 21.45661755647356 28.275521077937327 28.761886361574824 21.505975004014292 60-61 21.642331199532837 28.23425350923897 28.784902778164657 21.33851251306353 62-63 21.49537286144175 28.30675641583796 28.74078957084416 21.457081151876135 64-65 21.508509584620743 28.23251637198933 28.675101101809947 21.583872941579983 66-67 21.537183647629664 28.237882125474627 28.69005319707116 21.534881029824547 68-69 21.47402550785093 28.304599365509603 28.671493212803227 21.54988191383624 70-71 21.50192642256898 28.11928671126355 28.60052848524165 21.778258380925816 72-73 21.555468857438402 28.148890563059425 28.55444342798376 21.741197151518413 74-75 21.499978641117835 28.265374484378537 28.579086826563472 21.655560047940163 76-77 21.620222894077436 28.039030648219505 28.509212390513284 21.83153406718978 78-79 21.526671081721783 28.107394831153865 28.407411774416953 21.958522312707395 80-81 21.697506239448824 28.212380543467486 28.37789069896643 21.712222518117258 82-83 21.711837282934944 28.09857333360656 28.44251364552527 21.747075737933226 84-85 21.717024957189178 28.120489793044612 28.347474580063736 21.815010669702474 86-87 21.58711244615273 28.206411060785097 28.41279732948439 21.79367916357779 88-89 21.781976314125455 28.199659570013218 28.33675194495557 21.681612170905755 90-91 21.80088427632702 28.27357874879476 28.337892798436883 21.587644176441334 92-93 21.75509962220018 28.08918227311689 28.345213631088917 21.810504473594012 94-95 21.730257215200062 28.29170021950943 28.364632009298397 21.613410555992107 96-97 21.91286073234545 28.273558424642886 28.431785882024858 21.381794960986802 98-99 22.749083263390123 30.26328013377841 28.750842700028688 18.236793902802784 100 21.619110641545756 31.172607879924954 22.783127230069898 24.425154248459396 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 960.0 1 983.5 2 1621.5 3 2393.5 4 3013.0 5 4292.5 6 5390.0 7 6460.5 8 7688.0 9 8276.0 10 8193.0 11 8073.5 12 8780.0 13 10475.5 14 13906.5 15 18155.5 16 21426.0 17 23486.0 18 23962.5 19 22814.5 20 21343.5 21 20966.0 22 22758.0 23 27517.5 24 35280.5 25 46327.0 26 60780.0 27 77452.5 28 95611.5 29 116489.5 30 137656.5 31 157917.5 32 177611.0 33 195609.0 34 212870.0 35 227777.0 36 242085.5 37 256672.0 38 267860.0 39 275241.0 40 281943.0 41 287985.5 42 291666.0 43 293987.5 44 294272.0 45 293763.0 46 293303.5 47 290512.0 48 283477.5 49 272759.0 50 261482.0 51 247572.0 52 230135.5 53 211586.5 54 193585.5 55 175420.0 56 157120.5 57 139545.0 58 122200.0 59 103761.0 60 83550.0 61 65516.5 62 50090.5 63 36909.5 64 26744.5 65 19347.5 66 13964.0 67 10068.5 68 7360.0 69 5339.0 70 3832.5 71 2650.5 72 1795.0 73 1160.5 74 680.0 75 402.5 76 231.5 77 142.5 78 89.0 79 50.0 80 31.0 81 19.0 82 13.5 83 12.0 84 10.0 85 7.0 86 5.0 87 5.5 88 5.0 89 3.5 90 3.0 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0033976787663922525 6 0.0 7 0.0 8 0.0 9 2.7511568958641717E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 3.4401170905773886E-5 30-31 0.0 32-33 2.066396629955064E-5 34-35 0.0 36-37 6.974980606446249E-4 38-39 3.4610801878978903E-5 40-41 1.8740939276441488E-4 42-43 3.480935681080572E-5 44-45 6.359010739181192E-4 46-47 0.0 48-49 9.166266700144693E-5 50-51 0.0 52-53 9.238716276109412E-5 54-55 0.0020828886984171186 56-57 0.0013179097779021196 58-59 1.1500192987613573E-4 60-61 3.319544235236183E-4 62-63 1.45071619682563E-4 64-65 6.635081249486419E-4 66-67 0.0015179447468112162 68-69 2.7299672787597625E-4 70-71 7.277312384574771E-4 72-73 2.167448231059548E-4 74-75 1.3537301357024215E-4 76-77 7.569535646835745E-6 78-79 0.0015853094253428632 80-81 0.0 82-83 9.356623128211409E-4 84-85 2.024976843221542E-4 86-87 0.0 88-89 5.534929596486237E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 2.8808953098283555E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 45.0 20-21 192.0 22-23 396.0 24-25 533.0 26-27 892.0 28-29 1985.0 30-31 5085.0 32-33 6784.0 34-35 9985.0 36-37 16075.0 38-39 19087.0 40-41 20854.0 42-43 25083.0 44-45 31261.0 46-47 32627.0 48-49 29871.0 50-51 27123.0 52-53 25524.0 54-55 28112.0 56-57 30638.0 58-59 19582.0 60-61 36113.0 62-63 35135.0 64-65 38189.0 66-67 41097.0 68-69 42918.0 70-71 44259.0 72-73 41567.0 74-75 42375.0 76-77 44586.0 78-79 46514.0 80-81 47537.0 82-83 46342.0 84-85 46236.0 86-87 49084.0 88-89 51115.0 90-91 52737.0 92-93 54662.0 94-95 68402.0 96-97 250736.0 98-99 538991.0 100-101 5319340.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.3729574279774 #Duplication Level Percentage of deduplicated Percentage of total 1 89.69221526332137 76.5728967529652 2 7.2125098235552745 12.315065882305065 3 1.7685500481745398 4.52959043916157 4 0.6329732795934472 2.161552034071144 5 0.285145022250162 1.2171836922681372 6 0.1432771251269288 0.7339195142318569 7 0.0862255932133019 0.5152933729020923 8 0.046812806050714334 0.31972381584414383 9 0.03501882297170923 0.2690694434467449 >10 0.09568967782357081 1.2068844555118994 >50 0.0011677255516898877 0.06517743906800978 >100 3.151320750282549E-4 0.042689563832360264 >500 9.968029225968009E-5 0.050953594391666183 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.375578447932086E-5 0.0 0.0 0.0 3 0.0 1.375578447932086E-5 0.0 0.0 0.0 4 0.0 1.1004627583456688E-4 0.0 1.375578447932086E-5 0.0 5 0.0 1.1004627583456688E-4 0.0 1.375578447932086E-5 0.0 6 0.0 1.1004627583456688E-4 0.0 2.751156895864172E-5 0.0 7 0.0 1.1004627583456688E-4 0.0 2.751156895864172E-5 0.0 8 0.0 1.1004627583456688E-4 0.0 2.751156895864172E-5 0.0 9 0.0 1.788251982311712E-4 0.0 4.126735343796258E-5 1.375578447932086E-5 10-11 0.0 1.788251982311712E-4 0.0 9.629049135524603E-5 1.375578447932086E-5 12-13 0.0 1.788251982311712E-4 0.0 1.375578447932086E-4 2.063367671898129E-5 14-15 0.0 2.063367671898129E-4 0.0 1.6506941375185033E-4 2.751156895864172E-5 16-17 0.0 2.063367671898129E-4 0.0 1.788251982311712E-4 2.751156895864172E-5 18-19 0.0 2.1321465942947333E-4 0.0 1.9258098271049206E-4 3.438946119830215E-5 20-21 0.0 2.2009255166913376E-4 0.0 1.994588749501525E-4 4.126735343796258E-5 22-23 0.0 2.2009255166913376E-4 0.0 2.2697044390879417E-4 4.126735343796258E-5 24-25 0.0 2.4760412062777546E-4 0.0 2.4760412062777546E-4 4.126735343796258E-5 26-27 0.0 2.6135990510709633E-4 0.0 3.163830430243798E-4 4.126735343796258E-5 28-29 0.0 2.6135990510709633E-4 0.0 3.98917749900305E-4 4.126735343796258E-5 30-31 0.0 3.3013882750370066E-4 0.0 7.015450084453638E-4 4.126735343796258E-5 32-33 0.0 3.3013882750370066E-4 0.0 0.001808885659030693 5.502313791728344E-5 34-35 0.0 3.851619654209841E-4 0.0 0.002730523219145191 7.565681463626473E-5 36-37 0.0 4.4706299557792796E-4 0.0 0.004663210938489772 8.253470687592516E-5 38-39 0.0 4.539408878175884E-4 0.0 0.012572787014099265 8.253470687592516E-5 40-41 0.0 4.6769667229690925E-4 0.0 0.022153690903946244 8.253470687592516E-5 42-43 0.0 4.8145245677623006E-4 0.0 0.026975093363948207 8.253470687592516E-5 44-45 0.0 5.43353486933174E-4 0.0 0.033399044715791054 8.253470687592516E-5 46-47 0.0 5.91498732610797E-4 0.0 0.04051766318383959 8.253470687592516E-5 48-49 0.0 5.91498732610797E-4 0.0 0.047849496311317616 8.253470687592516E-5 50-51 0.0 6.87789223966043E-4 0.0 0.05566965978781152 8.253470687592516E-5 52-53 0.0 6.87789223966043E-4 0.0 0.08188818500539709 8.94125991155856E-5 54-55 0.0 6.87789223966043E-4 0.0 0.11338893146304185 9.629049135524603E-5 56-57 0.0 6.87789223966043E-4 0.0 0.152537894091189 9.629049135524603E-5 58-59 0.0 7.015450084453639E-4 0.0 0.27799064854259525 9.629049135524603E-5 60-61 0.0 7.153007929246848E-4 0.0 0.3831467429947636 9.629049135524603E-5 62-63 0.0 7.428123618833265E-4 0.0 0.3885183768339384 1.1004627583456688E-4 64-65 0.0 7.978354998006099E-4 0.0 0.3929133499750814 1.1004627583456688E-4 66-67 0.0 7.978354998006099E-4 0.0 0.3970194516421587 1.169241680742273E-4 68-69 0.0 8.184691765195911E-4 0.0 0.40080917026621155 1.2380206031388773E-4 70-71 0.0 8.253470687592516E-4 0.0 0.4042206048170831 1.2380206031388773E-4 72-73 0.0 8.253470687592516E-4 0.0 0.4069648838207076 1.5131362927252946E-4 74-75 0.0 8.872480989161955E-4 0.0 0.4089250831090109 1.5131362927252946E-4 76-77 0.0 9.42271236833479E-4 0.0 0.41140112431528864 1.581915215121899E-4 78-79 0.0 9.76660698031781E-4 0.0 0.4129555279614519 1.6506941375185033E-4 80-81 0.0 9.76660698031781E-4 0.0 0.41360204983198 1.7194730599151076E-4 82-83 0.0 9.76660698031781E-4 0.0 0.4140628686120372 1.788251982311712E-4 84-85 0.0 9.76660698031781E-4 0.0 0.4143448621938633 1.788251982311712E-4 86-87 0.0 9.835385902714415E-4 0.0 0.41448242003865654 1.788251982311712E-4 88 0.0 0.0010454396204283853 0.0 0.4145030537153755 1.788251982311712E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8370 0.0 50.47017 1 GTATCAA 15750 0.0 37.60627 1 TCAACGC 17640 0.0 32.619125 4 ATCAACG 17710 0.0 32.615738 3 CAACGCA 17990 0.0 32.00923 5 AACGCAG 18650 0.0 30.99525 6 TATCAAC 19280 0.0 30.35187 2 ACGCAGA 20885 0.0 27.593143 7 CGCAGAG 21420 0.0 26.862438 8 GCAGAGT 25910 0.0 22.31036 9 GTACATG 18550 0.0 20.663313 1 GAGTACT 15435 0.0 20.497406 12-13 TACATGG 18325 0.0 20.189054 2 AGAGTAC 23365 0.0 19.782873 10-11 CAGAGTA 25585 0.0 19.491465 10-11 ACATGGG 18540 0.0 19.427275 3 CGAGACC 4445 0.0 18.770422 86-87 AGACCGA 4670 0.0 18.147448 88-89 GTACTTT 18025 0.0 17.564663 14-15 ACCGAGG 4885 0.0 17.441652 90-91 >>END_MODULE