##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138978_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7434620 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.920546981553866 30.0 18.0 32.0 18.0 33.0 2 27.082389954025896 29.0 18.0 32.0 18.0 33.0 3 29.511075616507636 31.0 28.0 33.0 25.0 33.0 4 29.496654570105804 31.0 29.0 33.0 25.0 33.0 5 32.060274903088526 33.0 32.0 33.0 32.0 33.0 6 36.031409809781806 38.0 36.0 38.0 33.0 38.0 7 36.5474675235587 38.0 37.0 38.0 34.0 38.0 8 36.884124272659534 38.0 38.0 38.0 35.0 38.0 9 36.983185556222104 38.0 38.0 38.0 35.0 38.0 10-11 37.07630363085134 38.0 38.0 38.0 36.0 38.0 12-13 37.13204877989729 38.0 38.0 38.0 36.0 38.0 14-15 37.14082004191202 38.0 38.0 38.0 36.0 38.0 16-17 37.119855957668314 38.0 38.0 38.0 36.0 38.0 18-19 37.15500550128991 38.0 38.0 38.0 36.0 38.0 20-21 37.122802219299416 38.0 38.0 38.0 36.0 38.0 22-23 37.15924729296515 38.0 38.0 38.0 36.0 38.0 24-25 37.16723548222929 38.0 38.0 38.0 36.0 38.0 26-27 37.10250294720844 38.0 38.0 38.0 36.0 38.0 28-29 37.09074067662365 38.0 38.0 38.0 36.0 38.0 30-31 36.9580350153058 38.0 38.0 38.0 36.0 38.0 32-33 37.05139369101191 38.0 38.0 38.0 36.0 38.0 34-35 37.06572439982217 38.0 38.0 38.0 36.0 38.0 36-37 36.98507524889824 38.0 38.0 38.0 36.0 38.0 38-39 37.025213991660905 38.0 38.0 38.0 36.0 38.0 40-41 36.94129804849607 38.0 38.0 38.0 35.5 38.0 42-43 36.927653735826695 38.0 38.0 38.0 35.5 38.0 44-45 36.924558319141966 38.0 38.0 38.0 36.0 38.0 46-47 36.8799040722111 38.0 38.0 38.0 35.0 38.0 48-49 36.8418450912486 38.0 38.0 38.0 35.0 38.0 50-51 36.85878315757111 38.0 38.0 38.0 35.0 38.0 52-53 36.77326064960051 38.0 38.0 38.0 35.0 38.0 54-55 36.7611417900422 38.0 38.0 38.0 35.0 38.0 56-57 36.77005235818157 38.0 38.0 38.0 35.0 38.0 58-59 36.79377370215019 38.0 38.0 38.0 35.0 38.0 60-61 36.794363901539135 38.0 38.0 38.0 35.0 38.0 62-63 36.80470120146264 38.0 38.0 38.0 35.0 38.0 64-65 36.762316742620456 38.0 38.0 38.0 35.0 38.0 66-67 36.76995034670221 38.0 38.0 38.0 35.0 38.0 68-69 36.78658259021361 38.0 38.0 38.0 35.0 38.0 70-71 36.70482361413723 38.0 38.0 38.0 34.5 38.0 72-73 36.66258976606038 38.0 38.0 38.0 34.0 38.0 74-75 36.71795532058013 38.0 38.0 38.0 34.5 38.0 76-77 36.6971317351985 38.0 38.0 38.0 34.5 38.0 78-79 36.71539865399032 38.0 38.0 38.0 34.5 38.0 80-81 36.74176064652352 38.0 38.0 38.0 35.0 38.0 82-83 36.614301566516595 38.0 38.0 38.0 34.0 38.0 84-85 36.633232294359004 38.0 38.0 38.0 34.0 38.0 86-87 36.63474857368391 38.0 38.0 38.0 34.0 38.0 88-89 36.584638066327116 38.0 38.0 38.0 34.0 38.0 90-91 36.58515696581807 38.0 38.0 38.0 34.0 38.0 92-93 36.63451410910726 38.0 38.0 38.0 34.0 38.0 94-95 36.5335763415428 38.0 38.0 38.0 34.0 38.0 96-97 36.493786708186306 38.0 38.0 38.0 34.0 38.0 98-99 36.56571599402899 38.0 38.0 38.0 34.0 38.0 100 35.021437736314034 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 15.0 19 47.0 20 90.0 21 226.0 22 750.0 23 2158.0 24 5217.0 25 10506.0 26 18258.0 27 29706.0 28 45496.0 29 65114.0 30 88501.0 31 116122.0 32 152407.0 33 206651.0 34 307301.0 35 552683.0 36 1547890.0 37 4285477.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.01342637552423 22.17872601424148 15.008917738902595 23.79892987133169 2 13.701440019799263 22.99599710543377 40.320379521750944 22.982183353016026 3 17.1250985255467 27.31880042288644 31.444095326997214 24.11200572456965 4 12.435981933172105 18.83094226739228 39.80091786802822 28.93215793140739 5 12.936226146478258 38.51634551698794 35.59176533950865 12.955662997025152 6 28.692001567262558 39.12569023375643 19.282010281898778 12.900297917082234 7 25.163317022255338 33.43914013090111 24.513572986917957 16.88396985992559 8 23.96246210297231 36.91517522079138 21.888341300564118 17.234021375672192 9 25.392612587141315 16.61892828670844 21.984206588125094 36.00425253802515 10-11 23.498322711853465 27.205411978016365 29.776303294586675 19.5199620155435 12-13 24.394515119804375 24.990214698262992 29.772342096838845 20.84292808509379 14-15 21.751394153299024 26.23744051478085 27.292854241373465 24.718311090546656 16-17 21.169703360763563 29.122322324476567 28.083762182868792 21.62421213189107 18-19 21.255269267292746 28.365168630003957 29.722823762344277 20.656738340359023 20-21 22.16059842323749 27.48616844020223 29.500752400536012 20.852480736024265 22-23 21.9297975408653 27.397517782918257 29.32857570799763 21.344108968218816 24-25 21.714262192338843 27.55532947069912 29.35666572098447 21.373742615977562 26-27 21.510666430876306 27.722637078877593 29.378790827288515 21.38790566295759 28-29 21.54087899044862 27.589435774148193 29.483538801312807 21.386146434090385 30-31 21.78551015479681 27.56397951406342 29.340749250273195 21.309761080866572 32-33 21.657987473561953 27.644414493634994 29.233129193897344 21.464468838905706 34-35 21.76034860562404 27.624892859761058 29.272598286605948 21.342160248008955 36-37 21.68199383832227 27.589733257688977 29.25130798328392 21.476964920704834 38-39 21.58364006439964 27.726169309587174 29.301455251316693 21.388735374696495 40-41 21.79791628995973 27.561649640362518 29.210673001934516 21.42976106774324 42-43 21.70859807061591 27.661888862360428 28.994900763487845 21.634612303535814 44-45 21.751097702506055 27.687995075194742 28.931341357684246 21.629565864614957 46-47 21.870426500218024 27.685841881083796 28.6936813357893 21.75005028290888 48-49 21.75817145797442 27.836003034752338 28.644472677200696 21.761352830072543 50-51 21.794187253171447 27.916271919334374 28.530007027973337 21.75953379952084 52-53 21.931201519759533 27.87401753911126 28.438847729665223 21.75593321146398 54-55 21.925316685317025 27.738595016034918 28.45689595314445 21.879192345503608 56-57 21.832855717041326 27.871463704551818 28.471918069351474 21.823762509055378 58-59 21.800480264620827 27.905783431662723 28.52174487469722 21.771991429019234 60-61 21.893684256849884 27.94791401766225 28.490385095954952 21.668016629532914 62-63 21.838061799419116 28.011006746674582 28.480711034520123 21.67022041938618 64-65 21.87766621244769 27.907081719020688 28.385118561503496 21.830133507028126 66-67 21.872452129694082 27.98801354504996 28.279646143670806 21.859888181585145 68-69 21.817598268912413 27.938293882151953 28.34944320600777 21.894664642927864 70-71 21.841217790933843 27.750459093498552 28.429830189131778 21.978492926435827 72-73 21.94191720300524 27.79044907357955 28.239021809452176 22.028611913963033 74-75 21.841954884623576 27.913852607555956 28.21821570804226 22.025976799778206 76-77 21.97799391489951 27.779186955265217 28.208927425212554 22.033891704622718 78-79 21.958322710815697 27.79871431258472 28.10867176944875 22.134291207150827 80-81 21.942019960790084 27.905675705780403 28.078930771345057 22.07337356208446 82-83 22.021293077964334 27.885402397122512 28.088692398803627 22.004612126109528 84-85 22.051244756609563 27.918268036359834 28.031678284847946 21.998808922182658 86-87 22.005205415673885 27.85606960306138 28.119265826629718 22.01945915463502 88-89 22.03720223863964 27.88317977080908 28.07209450820622 22.00752348234506 90-91 22.088152477411292 27.906841835891193 28.077581258519064 21.927424428178448 92-93 22.125859315106307 27.882944140735198 28.045414812850506 21.945781731307985 94-95 22.010324332424513 27.90249221894472 28.07139377681634 22.01578967181443 96-97 22.163961307438615 27.981880917300234 28.108273149866527 21.745884625394623 98-99 23.132525039647724 29.881213859165346 28.353091322811895 18.633169778375034 100 22.01919723272921 30.795040432151175 22.38598439085388 24.799777944265724 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1497.0 1 1483.0 2 2071.5 3 2996.0 4 3752.5 5 5000.0 6 6253.5 7 8196.0 8 10193.5 9 10863.5 10 10689.0 11 10507.0 12 11417.5 13 13648.5 14 18264.0 15 23687.5 16 26993.5 17 27884.5 18 27121.0 19 25251.5 20 23234.5 21 22411.0 22 23994.0 23 28725.0 24 35959.0 25 46598.0 26 59962.5 27 74950.5 28 91599.5 29 110605.0 30 130219.0 31 148340.0 32 167552.0 33 186766.0 34 204161.5 35 219497.0 36 236037.0 37 251447.5 38 263003.0 39 273423.0 40 282823.0 41 289195.5 42 290378.5 43 292108.5 44 295188.5 45 296935.5 46 293717.5 47 285439.0 48 278847.5 49 273755.5 50 268150.0 51 259885.0 52 248012.5 53 232476.0 54 215390.0 55 199026.5 56 182495.5 57 163897.0 58 144067.5 59 124034.5 60 102950.0 61 82656.5 62 64222.0 63 48351.0 64 35053.5 65 24997.5 66 18168.0 67 13564.0 68 10134.0 69 7281.0 70 5241.0 71 3663.5 72 2473.5 73 1621.0 74 966.0 75 545.5 76 314.0 77 173.5 78 102.0 79 55.5 80 36.5 81 29.0 82 24.0 83 12.5 84 4.5 85 3.5 86 3.0 87 4.0 88 4.0 89 3.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.003873768935063258 6 1.3450586580080757E-5 7 0.0 8 0.0 9 1.3450586580080757E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.017813662575953E-5 26-27 0.0 28-29 1.3455588115836198E-5 30-31 0.0 32-33 2.0208708808336227E-5 34-35 0.0 36-37 4.864565431141367E-4 38-39 4.74203948750476E-5 40-41 2.0385452207428498E-4 42-43 6.817703339365638E-5 44-45 7.119885731310848E-4 46-47 0.0 48-49 5.532817979002679E-5 50-51 2.0846268153190885E-5 52-53 1.5350518983603065E-4 54-55 0.0020879183167118454 56-57 0.0011049673985351369 58-59 1.697445118770235E-4 60-61 5.118765672220836E-4 62-63 1.2149974424303837E-4 64-65 8.122111124999362E-4 66-67 0.0013236454062452194 68-69 3.641376553948341E-4 70-71 6.96786012174832E-4 72-73 2.5115991558662977E-4 74-75 2.1566474157377403E-4 76-77 1.4977969279436111E-5 78-79 0.0017126512263488146 80-81 0.0 82-83 9.501232784953847E-4 84-85 1.466842451007269E-4 86-87 7.780424591774737E-6 88-89 1.0983402901422782E-4 90-91 0.0 92-93 0.0 94-95 1.6121942503832792E-5 96-97 2.2083626111777662E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 40.0 20-21 234.0 22-23 447.0 24-25 548.0 26-27 1029.0 28-29 2306.0 30-31 5710.0 32-33 8013.0 34-35 11704.0 36-37 18481.0 38-39 22172.0 40-41 23539.0 42-43 28369.0 44-45 35914.0 46-47 37773.0 48-49 34799.0 50-51 30620.0 52-53 28915.0 54-55 31603.0 56-57 34012.0 58-59 36154.0 60-61 36870.0 62-63 38821.0 64-65 42515.0 66-67 46355.0 68-69 48089.0 70-71 49658.0 72-73 45201.0 74-75 46136.0 76-77 48792.0 78-79 50686.0 80-81 51264.0 82-83 48921.0 84-85 49681.0 86-87 52531.0 88-89 54709.0 90-91 56266.0 92-93 57175.0 94-95 70468.0 96-97 240361.0 98-99 543320.0 100-101 5364419.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.81014645114804 #Duplication Level Percentage of deduplicated Percentage of total 1 89.78344062825889 76.1454674857059 2 7.072726771067289 11.996779865263443 3 1.7465640394820972 4.443790559243561 4 0.6328636929044383 2.1469304991535916 5 0.29013261765575493 1.2303094896819755 6 0.14935267037918476 0.759997310863722 7 0.08893007036841605 0.5279520604299386 8 0.056253448541121465 0.3816690567323705 9 0.040622363587665286 0.31006697445555087 >10 0.1356400777860923 1.7789397851024191 >50 0.002803954753280263 0.16001410325661142 >100 6.163363607283104E-4 0.08922716859298474 >500 5.332885504553888E-5 0.028855641517980805 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.6901173160161515E-5 0.0 0.0 0.0 3 0.0 2.6901173160161515E-5 0.0 0.0 0.0 4 0.0 1.3450586580080758E-4 0.0 2.6901173160161515E-5 0.0 5 0.0 1.3450586580080758E-4 0.0 2.6901173160161515E-5 0.0 6 0.0 1.4795645238088834E-4 0.0 2.6901173160161515E-5 1.3450586580080757E-5 7 0.0 1.4795645238088834E-4 0.0 2.6901173160161515E-5 1.3450586580080757E-5 8 0.0 2.0175879870121136E-4 0.0 2.6901173160161515E-5 1.3450586580080757E-5 9 0.0 3.766164242422612E-4 0.0 2.6901173160161515E-5 1.3450586580080757E-5 10-11 0.0 3.766164242422612E-4 0.0 3.362646645020189E-5 1.3450586580080757E-5 12-13 0.0 3.766164242422612E-4 0.0 4.035175974024227E-5 1.3450586580080757E-5 14-15 0.0 4.3041877056258424E-4 0.0 4.035175974024227E-5 2.6901173160161515E-5 16-17 0.0 4.43869357142665E-4 0.0 4.035175974024227E-5 4.035175974024227E-5 18-19 0.0 4.774958235928669E-4 0.0 5.380234632032303E-5 4.707705303028265E-5 20-21 0.0 5.245728766231496E-4 0.0 5.380234632032303E-5 5.380234632032303E-5 22-23 0.0 5.85100516233513E-4 0.0 6.052763961036341E-5 6.052763961036341E-5 24-25 0.0 6.254522759737552E-4 0.0 7.397822619044416E-5 8.070351948048454E-5 26-27 0.0 6.456281558438763E-4 0.0 1.0087939935060568E-4 9.41541060605653E-5 28-29 0.0 6.456281558438763E-4 0.0 2.48835851731494E-4 9.41541060605653E-5 30-31 1.3450586580080757E-5 7.599581417745628E-4 0.0 6.725293290040378E-4 9.41541060605653E-5 32-33 1.3450586580080757E-5 7.801340216446839E-4 0.0 0.0014728392305188428 9.41541060605653E-5 34-35 1.3450586580080757E-5 9.079145941554511E-4 0.0 0.0027304690757563935 1.0760469264064606E-4 36-37 1.3450586580080757E-5 0.0010356951666662183 0.0 0.005265904646101617 1.0760469264064606E-4 38-39 1.3450586580080757E-5 0.0010356951666662183 0.0 0.013733048898262453 1.0760469264064606E-4 40-41 1.3450586580080757E-5 0.0012105527922072683 0.0 0.02324933890366959 1.0760469264064606E-4 42-43 1.3450586580080757E-5 0.0012307286720773893 0.0 0.02930210286470593 1.0760469264064606E-4 44-45 1.3450586580080757E-5 0.0013316080714279948 0.0 0.0368411566428412 1.0760469264064606E-4 46-47 1.3450586580080757E-5 0.0014055862976184391 0.0 0.04504601445669046 1.1432998593068644E-4 48-49 1.3450586580080757E-5 0.0014123115909084796 0.0 0.053129816991318995 1.2105527922072682E-4 50-51 1.3450586580080757E-5 0.0015468174567092872 0.0 0.061596961243479825 1.277805725107672E-4 52-53 1.3450586580080757E-5 0.0015468174567092872 0.0 0.08793320976727795 1.4123115909084796E-4 54-55 1.3450586580080757E-5 0.0015468174567092872 0.0 0.12088714688847581 1.4795645238088834E-4 56-57 1.3450586580080757E-5 0.0015468174567092872 0.0 0.16367346279971268 1.4795645238088834E-4 58-59 1.3450586580080757E-5 0.0015468174567092872 0.0 0.1968896863592221 1.4795645238088834E-4 60-61 1.3450586580080757E-5 0.001634246269479812 0.0 0.21539769349341326 1.4795645238088834E-4 62-63 1.3450586580080757E-5 0.0016745980292200541 0.0 0.22981672230725983 1.4795645238088834E-4 64-65 1.3450586580080757E-5 0.0018763568279212656 0.0 0.23439664703777732 1.4795645238088834E-4 66-67 1.3450586580080757E-5 0.0019032580010814272 0.0 0.23841837242522146 1.4795645238088834E-4 68-69 2.6901173160161515E-5 0.0019637856406917904 0.0 0.24244682310595567 1.4795645238088834E-4 70-71 2.6901173160161515E-5 0.0020108626937220733 0.0 0.24665685670552093 1.4795645238088834E-4 72-73 2.6901173160161515E-5 0.0020175879870121135 0.0 0.2499522504176407 2.0175879870121136E-4 74-75 2.6901173160161515E-5 0.0020848409199125174 0.0 0.2522859271892847 2.0175879870121136E-4 76-77 2.6901173160161515E-5 0.0022126214924232846 0.0 0.2545523510280283 2.0175879870121136E-4 78-79 2.6901173160161515E-5 0.0022664238387436076 0.0 0.2560520914317074 2.0175879870121136E-4 80-81 2.6901173160161515E-5 0.002279874425323688 0.0 0.25663046665465084 2.1520938528129212E-4 82-83 2.6901173160161515E-5 0.0022933250119037693 0.0 0.2571348636514038 2.2865997186137288E-4 84-85 2.6901173160161515E-5 0.0023067755984838498 0.0 0.25735679832997516 2.2865997186137288E-4 86-87 2.6901173160161515E-5 0.002380753824674294 0.0 0.25744422714274573 2.2865997186137288E-4 88 2.6901173160161515E-5 0.0025152596904751017 0.0 0.25745767772932576 2.2865997186137288E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8920 0.0 54.63741 1 GTATCAA 16390 0.0 37.526646 1 TCAACGC 21055 0.0 29.065245 4 ATCAACG 21205 0.0 28.734617 3 CAACGCA 21505 0.0 28.41595 5 AACGCAG 22025 0.0 27.784252 6 TATCAAC 22310 0.0 27.370827 2 ACGCAGA 25745 0.0 23.786755 7 CGCAGAG 26355 0.0 23.269726 8 AGAGTAC 27720 0.0 19.924232 10-11 GCAGAGT 30860 0.0 19.91572 9 GTACATG 21680 0.0 19.056002 1 GAGTACT 17895 0.0 18.62912 12-13 TACATGG 22160 0.0 18.623297 2 ACATGGG 22405 0.0 18.10411 3 CAGAGTA 30600 0.0 17.875742 10-11 AGTACTT 19890 0.0 17.26041 12-13 GTGGTAT 4370 0.0 16.986631 1 TGGTATC 4085 0.0 16.549269 2 GTACTTT 20230 0.0 16.282387 14-15 >>END_MODULE