##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138977_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12786969 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.489951371587747 30.0 18.0 32.0 18.0 33.0 2 26.831289338388167 29.0 18.0 32.0 18.0 33.0 3 29.3912069388766 31.0 27.0 33.0 25.0 33.0 4 29.3937404556154 31.0 29.0 33.0 25.0 33.0 5 32.065390946048275 33.0 32.0 33.0 32.0 33.0 6 36.0480938054984 38.0 36.0 38.0 33.0 38.0 7 36.57921849970857 38.0 37.0 38.0 34.0 38.0 8 36.911772836862276 38.0 38.0 38.0 35.0 38.0 9 37.00283499553334 38.0 38.0 38.0 35.0 38.0 10-11 37.10611686006277 38.0 38.0 38.0 36.0 38.0 12-13 37.15999956674642 38.0 38.0 38.0 36.0 38.0 14-15 37.167979252941024 38.0 38.0 38.0 36.0 38.0 16-17 37.14476198386029 38.0 38.0 38.0 36.0 38.0 18-19 37.17839157191982 38.0 38.0 38.0 36.0 38.0 20-21 37.14528423829822 38.0 38.0 38.0 36.0 38.0 22-23 37.181496751711364 38.0 38.0 38.0 36.0 38.0 24-25 37.189499215035795 38.0 38.0 38.0 36.0 38.0 26-27 37.1260237925908 38.0 38.0 38.0 36.0 38.0 28-29 37.114352138881685 38.0 38.0 38.0 36.0 38.0 30-31 36.984391426436986 38.0 38.0 38.0 36.0 38.0 32-33 37.078673967005585 38.0 38.0 38.0 36.0 38.0 34-35 37.09052098030712 38.0 38.0 38.0 36.0 38.0 36-37 37.01192132090521 38.0 38.0 38.0 36.0 38.0 38-39 37.048226234218326 38.0 38.0 38.0 36.0 38.0 40-41 36.9674732495241 38.0 38.0 38.0 36.0 38.0 42-43 36.95948665322403 38.0 38.0 38.0 36.0 38.0 44-45 36.96082873282052 38.0 38.0 38.0 36.0 38.0 46-47 36.92285438206957 38.0 38.0 38.0 36.0 38.0 48-49 36.890411074135585 38.0 38.0 38.0 35.5 38.0 50-51 36.90955393081434 38.0 38.0 38.0 36.0 38.0 52-53 36.82046207750277 38.0 38.0 38.0 35.0 38.0 54-55 36.80771955971778 38.0 38.0 38.0 35.0 38.0 56-57 36.81376654653828 38.0 38.0 38.0 35.0 38.0 58-59 36.83462257341766 38.0 38.0 38.0 35.0 38.0 60-61 36.830371976218736 38.0 38.0 38.0 35.0 38.0 62-63 36.83554743466337 38.0 38.0 38.0 35.0 38.0 64-65 36.790835195790095 38.0 38.0 38.0 35.0 38.0 66-67 36.79535960300343 38.0 38.0 38.0 35.0 38.0 68-69 36.80872113768222 38.0 38.0 38.0 35.0 38.0 70-71 36.72495080764162 38.0 38.0 38.0 35.0 38.0 72-73 36.680090361694326 38.0 38.0 38.0 34.5 38.0 74-75 36.73411838531388 38.0 38.0 38.0 35.0 38.0 76-77 36.7145509162893 38.0 38.0 38.0 34.5 38.0 78-79 36.72970180947665 38.0 38.0 38.0 35.0 38.0 80-81 36.75483276889522 38.0 38.0 38.0 35.0 38.0 82-83 36.630059017781846 38.0 38.0 38.0 34.0 38.0 84-85 36.64638453290293 38.0 38.0 38.0 34.0 38.0 86-87 36.64654553313501 38.0 38.0 38.0 34.0 38.0 88-89 36.593306572265774 38.0 38.0 38.0 34.0 38.0 90-91 36.59254083570518 38.0 38.0 38.0 34.0 38.0 92-93 36.63892968303868 38.0 38.0 38.0 34.0 38.0 94-95 36.53667569321462 38.0 38.0 38.0 34.0 38.0 96-97 36.494550832371274 38.0 38.0 38.0 34.0 38.0 98-99 36.56451452048971 38.0 38.0 38.0 34.0 38.0 100 35.00242837549264 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 40.0 19 96.0 20 180.0 21 412.0 22 1284.0 23 3639.0 24 8472.0 25 17024.0 26 30556.0 27 49183.0 28 74184.0 29 105405.0 30 143355.0 31 190276.0 32 252717.0 33 347257.0 34 524650.0 35 956884.0 36 2718397.0 37 7362956.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.19170125461319 22.66595782002756 14.946802483059122 24.195538442300126 2 13.38079415067011 23.237625742269337 40.50567417501364 22.875905932046912 3 17.013335998546644 27.32317564858412 31.478038306028584 24.185450046840653 4 12.268051951952023 19.085320375766923 40.29849450639944 28.348133165881613 5 12.819792509189776 38.480548303545916 36.037986644345196 12.661672542919113 6 28.37406243403928 39.58033988826279 19.536939447798684 12.508658229899241 7 24.82417842727233 33.371121803767565 24.916757051651565 16.887942717308533 8 23.350310773413153 37.42285603413913 22.27970522177695 16.947127970670767 9 24.922123837331885 16.934577454170526 22.286573329971578 35.85672537852601 10-11 23.06586494422564 27.460115841369444 30.204413571347516 19.269605643057396 12-13 23.961444655101612 25.077913303770426 30.154753640209808 20.805888400918153 14-15 21.3515611088132 26.481111356412924 27.530589931046208 24.63673760372767 16-17 20.996238436176704 29.35535387627826 28.333508902696174 21.314898784848857 18-19 21.006236896327817 28.759301754778633 29.771292946749146 20.4631684021444 20-21 21.805584486136894 27.939968254066322 29.482707389385542 20.771739870411242 22-23 21.532222504988514 27.918458352618185 29.305024239084513 21.244294903308788 24-25 21.369362165377748 28.029229832427298 29.376019131366597 21.225388870828354 26-27 21.340295552091785 28.19800281077779 29.27130771563783 21.190393921492596 28-29 21.277570714404234 28.189604545072992 29.36142860350312 21.171396137019656 30-31 21.624853392048124 27.993894519596857 29.275157920628992 21.10609416772603 32-33 21.428787383911416 28.100666630636812 29.238481607934087 21.232064377517684 34-35 21.499185846459532 28.069659187866502 29.25210599910925 21.179048966564714 36-37 21.43388835999528 28.08458451718997 29.2151476351647 21.26637948765005 38-39 21.335133016313105 28.13241416057306 29.342761226985825 21.18969159612801 40-41 21.566259814498927 27.98794069977477 29.23396118680418 21.21183829892212 42-43 21.529418970161128 28.043059567346923 29.04805104736247 21.37947041512948 44-45 21.542304195545473 28.132186448396528 28.952773250871573 21.37273610518643 46-47 21.581375405213574 28.09123982703688 28.7714366454866 21.55594812226295 48-49 21.533041883652135 28.165013384706423 28.80255855743743 21.49938617420401 50-51 21.504581896909926 28.219944619411695 28.753346405200254 21.522127078478125 52-53 21.670748084623085 28.19331592429297 28.666632824915077 21.469303166168867 54-55 21.64219827186266 28.11670600481943 28.68304023549394 21.558055487823967 56-57 21.653758210678156 28.207377342198814 28.599765667140108 21.539098779982922 58-59 21.534015948547495 28.30397027054107 28.730695878409197 21.431317902502244 60-61 21.663934091018934 28.337230816513433 28.617267151714337 21.3815679407533 62-63 21.57115927672785 28.45736125909611 28.567178610561548 21.404300853614487 64-65 21.572563107727806 28.361688170111734 28.55739131186459 21.508357410295872 66-67 21.594919981437442 28.40540990190446 28.435494422218994 21.564175694439104 68-69 21.564867957943136 28.35243016417503 28.495277708387068 21.587424169494764 70-71 21.59412233334775 28.176859265705023 28.525693378058172 21.703325022889057 72-73 21.66367770116409 28.11849962244985 28.518413891888063 21.699408784497997 74-75 21.595086622207884 28.22555675088233 28.432104205379282 21.7472524215305 76-77 21.692902977470236 28.15268700661044 28.38203874817627 21.772371267743058 78-79 21.697632754624273 28.14914063036799 28.35219974647299 21.801026868534745 80-81 21.66756225984052 28.223304292449825 28.32375995665832 21.78537349105133 82-83 21.725056889018347 28.184443819486475 28.393360882295138 21.697138409200036 84-85 21.817029337021054 28.189661082951794 28.3096674103952 21.68364216963195 86-87 21.72021577382834 28.186661953733545 28.358804725985802 21.734317546452314 88-89 21.73509865164957 28.194142287753998 28.332692579579934 21.7380664810165 90-91 21.782389885542027 28.28989145931562 28.297231834052994 21.63048682108936 92-93 21.882664162846243 28.180430648654852 28.297419861393756 21.639485327105145 94-95 21.75834486682832 28.322254074856684 28.26036668663064 21.659034371684356 96-97 21.795464529420858 28.37816038321917 28.374581367778344 21.451793719581627 98-99 22.82735530900658 30.25316706748709 28.63860569289045 18.280871930615877 100 21.628747598274384 31.26199783866273 22.694170776717634 24.415083786345253 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1339.0 1 1486.0 2 2472.5 3 3662.0 4 4734.0 5 6489.0 6 8053.5 7 10156.5 8 12291.0 9 13285.0 10 13436.0 11 13392.0 12 14790.0 13 18186.0 14 24478.0 15 31922.5 16 37193.0 17 39415.5 18 38981.5 19 37228.0 20 36073.5 21 36846.0 22 41209.0 23 49975.5 24 63749.0 25 84268.5 26 111253.0 27 141691.0 28 173782.0 29 208306.0 30 242644.5 31 277070.0 32 311266.5 33 342802.0 34 374398.5 35 401254.0 36 427248.0 37 453694.5 38 473109.5 39 487403.5 40 500584.0 41 511307.0 42 517112.5 43 524946.5 44 529986.0 45 529531.5 46 522729.0 47 509909.0 48 496393.5 49 479481.0 50 460747.0 51 436524.5 52 408380.0 53 378478.0 54 346200.5 55 314352.5 56 283106.0 57 250308.0 58 217405.0 59 184533.5 60 149166.0 61 116677.0 62 88985.0 63 65751.0 64 47723.0 65 34460.0 66 24932.0 67 18390.5 68 13358.5 69 9251.0 70 6573.0 71 4724.0 72 3218.5 73 2055.5 74 1249.0 75 743.0 76 435.0 77 242.0 78 130.5 79 74.0 80 41.5 81 25.0 82 16.5 83 12.0 84 11.5 85 10.5 86 8.5 87 5.5 88 3.5 89 4.0 90 3.5 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.003714719258332448 6 1.5640923192978728E-5 7 0.0 8 0.0 9 7.820461596489364E-6 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.910617365252836E-6 26-27 0.0 28-29 3.129223229006335E-5 30-31 0.0 32-33 2.741401232776804E-5 34-35 0.0 36-37 6.167041265322888E-4 38-39 3.544852726139449E-5 40-41 2.1730272557277344E-4 42-43 9.51399010441961E-5 44-45 6.846203579107663E-4 46-47 0.0 48-49 8.843006725187005E-5 50-51 1.211404794667493E-5 52-53 1.0136297110924217E-4 54-55 0.002121133237213292 56-57 0.0012514391038485474 58-59 1.4795006553776932E-4 60-61 3.676467702706281E-4 62-63 9.966397460429042E-5 64-65 7.725503909564332E-4 66-67 0.0013909537244403847 68-69 3.638767838741995E-4 70-71 6.69035649458047E-4 72-73 2.146264214654237E-4 74-75 1.4690716348710595E-4 76-77 0.0 78-79 0.0015380705995438637 80-81 0.0 82-83 8.674404621117799E-4 84-85 1.2099204333917067E-4 86-87 9.030913448899524E-6 88-89 5.007071578227596E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 2.559819060611822E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 74.0 20-21 386.0 22-23 643.0 24-25 836.0 26-27 1636.0 28-29 3405.0 30-31 9833.0 32-33 13545.0 34-35 20269.0 36-37 32707.0 38-39 38414.0 40-41 40990.0 42-43 48094.0 44-45 59754.0 46-47 62515.0 48-49 57986.0 50-51 51865.0 52-53 49551.0 54-55 54829.0 56-57 58098.0 58-59 61135.0 60-61 63969.0 62-63 65781.0 64-65 72739.0 66-67 79872.0 68-69 82138.0 70-71 88506.0 72-73 76554.0 74-75 77478.0 76-77 81717.0 78-79 85092.0 80-81 85784.0 82-83 82414.0 84-85 83735.0 86-87 87640.0 88-89 91670.0 90-91 93374.0 92-93 95679.0 94-95 119115.0 96-97 409716.0 98-99 929095.0 100-101 9268336.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.97628726421522 #Duplication Level Percentage of deduplicated Percentage of total 1 88.49103786194188 73.42657777941034 2 7.635854582105527 12.671897266251243 3 2.143453253320357 5.3356737865477974 4 0.7956766906734738 2.640891906190491 5 0.36793440194088695 1.526491531491713 6 0.19079048085297037 0.9498651447920293 7 0.11653212798814253 0.6768582329218086 8 0.06325636465078793 0.4199022627642982 9 0.04972403223587308 0.3713324024465012 >10 0.14308026935910703 1.7810143096535735 >50 0.0021668789007245988 0.1176036991941812 >100 4.604752414154527E-4 0.058601721966330275 >500 1.629086703992922E-5 0.009610982765979829 >1k 1.6289921833431935E-5 0.013678973603652094 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.5640923192978728E-5 0.0 0.0 7.820461596489364E-6 3 0.0 1.5640923192978728E-5 0.0 0.0 7.820461596489364E-6 4 0.0 4.6922769578936183E-5 0.0 1.5640923192978728E-5 7.820461596489364E-6 5 0.0 5.4743231175425544E-5 0.0 1.5640923192978728E-5 7.820461596489364E-6 6 0.0 5.4743231175425544E-5 0.0 1.5640923192978728E-5 7.820461596489364E-6 7 0.0 5.4743231175425544E-5 0.0 2.3461384789468092E-5 7.820461596489364E-6 8 0.0 6.256369277191491E-5 0.0 2.3461384789468092E-5 7.820461596489364E-6 9 0.0 1.0948646235085109E-4 0.0 3.9102307982446816E-5 7.820461596489364E-6 10-11 0.0 1.1730692394734045E-4 0.0 5.8653461973670224E-5 7.820461596489364E-6 12-13 0.0 1.2512738554382982E-4 0.0 7.820461596489363E-5 7.820461596489364E-6 14-15 0.0 1.7596038592101066E-4 0.0 7.820461596489363E-5 7.820461596489364E-6 16-17 0.0 1.7987061671925536E-4 0.0 1.0166600075436173E-4 7.820461596489364E-6 18-19 0.0 1.8378084751750006E-4 0.0 1.2121715474558512E-4 7.820461596489364E-6 20-21 0.0 1.9551153991223408E-4 0.0 1.3685807793856387E-4 7.820461596489364E-6 22-23 0.0 2.0724223230696813E-4 0.0 1.5640923192978726E-4 7.820461596489364E-6 24-25 0.0 2.58075232684149E-4 0.0 1.7987061671925536E-4 7.820461596489364E-6 26-27 0.0 2.815366174736171E-4 0.0 2.111524631052128E-4 7.820461596489364E-6 28-29 0.0 2.815366174736171E-4 0.0 3.32369617850798E-4 7.820461596489364E-6 30-31 0.0 3.55831002640266E-4 0.0 6.99931312885798E-4 7.820461596489364E-6 32-33 0.0 3.753821566314894E-4 0.0 0.0015758230116926066 7.820461596489364E-6 34-35 0.0 4.3403561860515965E-4 0.0 0.002791904789946703 7.820461596489364E-6 36-37 0.0 4.926890805788299E-4 0.0 0.005360926424393459 7.820461596489364E-6 38-39 0.0 5.357016193595214E-4 0.0 0.013834396564189683 1.9551153991223408E-5 40-41 0.0 5.630732349472342E-4 0.0 0.023801574868915376 3.5192077184202136E-5 42-43 3.910230798244682E-6 5.90444850534947E-4 0.0 0.02950660160355437 4.692276957893618E-5 44-45 7.820461596489364E-6 6.725596972980852E-4 0.0 0.036642772810350915 5.4743231175425544E-5 46-47 7.820461596489364E-6 7.194824668770214E-4 0.0 0.04468611756234023 6.256369277191491E-5 48-49 7.820461596489364E-6 7.429438516664895E-4 0.0 0.052706000929540066 6.256369277191491E-5 50-51 7.820461596489364E-6 7.976870828419151E-4 0.0 0.06113254829975735 6.256369277191491E-5 52-53 7.820461596489364E-6 8.015973136401598E-4 0.0 0.0867523804898565 7.429438516664896E-5 54-55 7.820461596489364E-6 8.211484676313831E-4 0.0 0.12011837989127838 8.602507756138299E-5 56-57 7.820461596489364E-6 8.446098524208512E-4 0.0 0.16584070861515343 8.602507756138299E-5 58-59 7.820461596489364E-6 8.446098524208512E-4 0.0 0.2010523369533468 9.384553915787235E-5 60-61 7.820461596489364E-6 8.758916988068087E-4 0.0 0.21690832284022898 1.0166600075436173E-4 62-63 7.820461596489364E-6 8.837121604032981E-4 0.0 0.22873677100491915 1.0166600075436173E-4 64-65 7.820461596489364E-6 9.384553915787236E-4 0.0 0.23295982026702342 1.0166600075436173E-4 66-67 7.820461596489364E-6 9.619167763681917E-4 0.0 0.23713594675954872 1.055762315526064E-4 68-69 7.820461596489364E-6 0.001004929315148883 0.0 0.2411165617121618 1.1730692394734045E-4 70-71 1.1730692394734046E-5 0.0010166600075436172 0.0 0.24463967966138028 1.1730692394734045E-4 72-73 1.5640923192978728E-5 0.0010362111615348406 0.0 0.24788126099312513 1.5640923192978726E-4 74-75 1.5640923192978728E-5 0.001059672546324309 0.0 0.2503212450112298 1.6422969352627664E-4 76-77 1.5640923192978728E-5 0.001106595315903245 0.0 0.2524757821810626 1.6422969352627664E-4 78-79 1.5640923192978728E-5 0.0011105055467014895 0.0 0.25391474711481665 1.6422969352627664E-4 80-81 1.5640923192978728E-5 0.0011144157774997344 0.0 0.254430897580185 1.6422969352627664E-4 82-83 1.5640923192978728E-5 0.0011222362390962237 0.0 0.25485320250639537 1.7987061671925536E-4 84-85 1.5640923192978728E-5 0.001130056700692713 0.0 0.2550799958926936 1.7987061671925536E-4 86-87 1.5640923192978728E-5 0.001153518085482181 0.0 0.2551855721242462 1.7987061671925536E-4 88 1.5640923192978728E-5 0.00122781247064883 0.0 0.2551894823550444 1.7987061671925536E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12490 0.0 46.398254 1 GTATCAA 22210 0.0 35.852276 1 TCAACGC 26610 0.0 29.724558 4 ATCAACG 26755 0.0 29.530396 3 CAACGCA 27410 0.0 28.873144 5 AACGCAG 28655 0.0 27.725323 6 TATCAAC 29710 0.0 26.786829 2 ACGCAGA 32425 0.0 24.392605 7 CGCAGAG 33305 0.0 23.748095 8 AGAGTAC 36560 0.0 19.213877 10-11 GCAGAGT 41165 0.0 19.21366 9 GTACATG 30085 0.0 17.483349 1 TACATGG 29935 0.0 17.30495 2 GAGTACT 24455 0.0 17.229315 12-13 CAGAGTA 40425 0.0 16.889908 10-11 ACATGGG 30355 0.0 16.7449 3 AGTACTT 28135 0.0 16.02917 12-13 TATGCCG 4825 0.0 15.131798 42-43 GTGGTAT 7595 0.0 15.085674 1 CATGGGG 22330 0.0 14.600628 4 >>END_MODULE