##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138976_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6270711 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.848860998378015 30.0 18.0 32.0 18.0 33.0 2 27.011441924209233 29.0 18.0 32.0 18.0 33.0 3 29.489465548643526 31.0 28.0 33.0 25.0 33.0 4 29.514562543226756 31.0 29.0 33.0 25.0 33.0 5 32.05262305980933 33.0 32.0 33.0 32.0 33.0 6 36.051320655664085 38.0 36.0 38.0 33.0 38.0 7 36.57161125747942 38.0 37.0 38.0 34.0 38.0 8 36.88773665378615 38.0 38.0 38.0 35.0 38.0 9 36.979040494770054 38.0 38.0 38.0 35.0 38.0 10-11 37.084431255084155 38.0 38.0 38.0 36.0 38.0 12-13 37.14185608298644 38.0 38.0 38.0 36.0 38.0 14-15 37.15068283325448 38.0 38.0 38.0 36.0 38.0 16-17 37.12511611522203 38.0 38.0 38.0 36.0 38.0 18-19 37.15839543554152 38.0 38.0 38.0 36.0 38.0 20-21 37.12509818498921 38.0 38.0 38.0 36.0 38.0 22-23 37.15972394095106 38.0 38.0 38.0 36.0 38.0 24-25 37.168841192579194 38.0 38.0 38.0 36.0 38.0 26-27 37.107305788751646 38.0 38.0 38.0 36.0 38.0 28-29 37.097838581309375 38.0 38.0 38.0 36.0 38.0 30-31 36.96567139509271 38.0 38.0 38.0 36.0 38.0 32-33 37.06170756690739 38.0 38.0 38.0 36.0 38.0 34-35 37.07646325307756 38.0 38.0 38.0 36.0 38.0 36-37 36.99945735906252 38.0 38.0 38.0 36.0 38.0 38-39 37.04021736485886 38.0 38.0 38.0 36.0 38.0 40-41 36.95442259006674 38.0 38.0 38.0 36.0 38.0 42-43 36.941909274771426 38.0 38.0 38.0 36.0 38.0 44-45 36.942701510804255 38.0 38.0 38.0 36.0 38.0 46-47 36.9038859356239 38.0 38.0 38.0 35.5 38.0 48-49 36.86990178799937 38.0 38.0 38.0 35.0 38.0 50-51 36.887112204189386 38.0 38.0 38.0 35.0 38.0 52-53 36.79938020494431 38.0 38.0 38.0 35.0 38.0 54-55 36.787911178040844 38.0 38.0 38.0 35.0 38.0 56-57 36.795231093063194 38.0 38.0 38.0 35.0 38.0 58-59 36.81719532222695 38.0 38.0 38.0 35.0 38.0 60-61 36.81310750759786 38.0 38.0 38.0 35.0 38.0 62-63 36.82011817707151 38.0 38.0 38.0 35.0 38.0 64-65 36.7747345964375 38.0 38.0 38.0 35.0 38.0 66-67 36.7813458253122 38.0 38.0 38.0 35.0 38.0 68-69 36.79502018101948 38.0 38.0 38.0 35.0 38.0 70-71 36.71176433960488 38.0 38.0 38.0 34.5 38.0 72-73 36.662024421221375 38.0 38.0 38.0 34.0 38.0 74-75 36.71359392183278 38.0 38.0 38.0 34.5 38.0 76-77 36.69031868540217 38.0 38.0 38.0 34.0 38.0 78-79 36.707663864921926 38.0 38.0 38.0 34.5 38.0 80-81 36.72802146190678 38.0 38.0 38.0 35.0 38.0 82-83 36.596635436150464 38.0 38.0 38.0 34.0 38.0 84-85 36.618954688535325 38.0 38.0 38.0 34.0 38.0 86-87 36.619315012116374 38.0 38.0 38.0 34.0 38.0 88-89 36.560622516057876 38.0 38.0 38.0 34.0 38.0 90-91 36.55934598403896 38.0 38.0 38.0 34.0 38.0 92-93 36.604070194763764 38.0 38.0 38.0 34.0 38.0 94-95 36.4995860914387 38.0 38.0 38.0 34.0 38.0 96-97 36.45865312595147 38.0 38.0 38.0 34.0 38.0 98-99 36.52868055395936 38.0 38.0 38.0 34.0 38.0 100 34.91258057471373 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 13.0 19 39.0 20 71.0 21 181.0 22 633.0 23 1851.0 24 4342.0 25 8718.0 26 15169.0 27 24421.0 28 37077.0 29 53112.0 30 72108.0 31 95955.0 32 127541.0 33 175056.0 34 260407.0 35 467179.0 36 1295868.0 37 3630970.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.69200797166382 22.32195041359744 14.889252590336246 24.096789024402497 2 13.572336534086805 23.10930929522984 40.287122146117085 23.031232024566272 3 17.231267714299065 27.113863164799017 31.279148409167632 24.37572071173428 4 12.471632004728013 18.80467781085749 39.99788859668385 28.725801587730643 5 13.053345770467887 38.398260162038916 35.69752119020124 12.850872877291955 6 28.763138464384415 39.243610372669124 19.362735639185992 12.630515523760465 7 25.234012538610056 33.2110186548224 24.64594525246021 16.909023554107343 8 23.73187027754907 37.14899315245113 21.996835765513673 17.122300804486127 9 25.240220006984853 16.798480554833503 22.083448285760305 35.877851152421336 10-11 23.398518923930638 27.247340851779008 29.920825565075475 19.433314659214883 12-13 24.23375116474033 24.93482796448441 29.868120217946576 20.963300652828682 14-15 21.62135202850203 26.265905094334595 27.29294971495258 24.819793162210793 16-17 21.210258294474105 29.131289896791607 28.104516377807876 21.553935430926412 18-19 21.307224970182805 28.540192651200158 29.494980712713435 20.657601665903595 20-21 22.13574101107666 27.69904517258305 29.25581063052035 20.909403185819933 22-23 21.842073871265914 27.610304225707903 29.07664426113743 21.47097764188875 24-25 21.634599206049852 27.74369486490551 29.154598274655203 21.467107654389427 26-27 21.572201437531636 27.908216741599745 29.071676492619947 21.44790532824867 28-29 21.56425258290067 27.84408200996272 29.188893218038807 21.4027721890978 30-31 21.796390044006476 27.76535230193276 29.02743988133881 21.410817772721952 32-33 21.644117667017813 27.884798316419424 28.978510955688254 21.492573060874516 34-35 21.749373072702472 27.836562852263302 29.002520174621516 21.41154390041271 36-37 21.732731016386246 27.780400918918215 28.966583475619068 21.52028458907647 38-39 21.62649078619868 27.92663914826305 29.055666039839284 21.391204025698986 40-41 21.848208094260013 27.797777623661503 28.9129678157803 21.441046466298186 42-43 21.714771465480418 27.89071509679586 28.7829807900388 21.611532647684925 44-45 21.801685620017945 27.906000472978405 28.67559258487546 21.616721322128196 46-47 21.88056894925094 27.87731411088779 28.495072955567835 21.74704398429343 48-49 21.764016193857135 27.958488274684694 28.585147051576886 21.69234847988128 50-51 21.775771601027685 28.08793680870213 28.421345618895266 21.714945971374924 52-53 21.96331188587305 27.995570003296667 28.306448835260216 21.734669275570067 54-55 21.91737419825496 27.90892586095728 28.38840763001209 21.785292310775667 56-57 21.846076182143978 28.002990915457595 28.395210043610362 21.75572285878807 58-59 21.814016977024302 28.030086448725065 28.353532087662504 21.802364486588125 60-61 21.938555942753435 27.97946607575711 28.448067191781114 21.63391078970834 62-63 21.848433642491134 28.027374941234314 28.4372512655957 21.68694015067885 64-65 21.862083396979298 27.93609671124036 28.346460191606916 21.855359700173423 66-67 21.878167995427305 28.006056937640366 28.33358216701672 21.782192899915607 68-69 21.795851875195375 28.085039692927282 28.307482737325245 21.811625694552102 70-71 21.84687263484352 27.89083672995787 28.259353879717064 22.00293675548154 72-73 21.892254365687045 27.916031173968985 28.195785040600423 21.995929419743547 74-75 21.81650911732395 28.010047044261306 28.221112163277905 21.95233167513684 76-77 21.948149971143398 27.858458797450915 28.161860410301028 22.03153082110466 78-79 21.89187732639605 27.85989527795015 28.05871264642059 22.18951474923321 80-81 21.975016919010823 28.039123950736055 28.016723268182343 21.969135862070782 82-83 22.048847916576282 27.91935606006051 28.04075263223978 21.991043391123426 84-85 22.002677182819603 27.890069192128824 28.006194287057994 22.101059337993576 86-87 21.928008092201818 27.972670463311143 28.080386215141573 22.01893522934546 88-89 22.067858771692254 28.005332194817207 28.021421491133257 21.905387542357282 90-91 22.07682862241228 28.050914951877832 28.0083489063507 21.86390751935919 92-93 22.046942917963516 27.902447129292284 28.00435398554637 22.046255967197826 94-95 22.009031232589297 28.044017859229655 28.047750002563536 21.899200905617512 96-97 22.250059684038458 28.032616472382514 28.103310096909645 21.61401374666938 98-99 22.19151933950961 28.828797726374493 27.295633167048923 21.684049767066973 100 20.26611730795309 28.501866148213324 28.492937492313075 22.739079051520513 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 672.0 1 746.5 2 1224.5 3 1811.5 4 2331.5 5 3172.0 6 3933.0 7 4965.5 8 6006.0 9 6515.5 10 6629.0 11 6695.0 12 7440.0 13 8871.0 14 11734.0 15 15393.0 16 17691.0 17 18462.5 18 18281.0 19 17304.0 20 16305.5 21 16307.5 22 17939.0 23 21625.5 24 27754.5 25 36766.0 26 48253.5 27 61035.5 28 75302.0 29 91260.0 30 106866.5 31 122223.5 32 138497.0 33 154481.5 34 169751.0 35 183595.0 36 198303.0 37 212372.5 38 221463.0 39 228908.0 40 236674.5 41 243155.0 42 245714.0 43 247251.5 44 248322.5 45 249068.0 46 248869.5 47 245400.5 48 240938.0 49 235029.5 50 227844.0 51 218749.0 52 207762.5 53 194166.5 54 179260.5 55 164550.5 56 148651.0 57 131866.0 58 116066.5 59 99580.5 60 81091.5 61 63571.0 62 48584.5 63 36113.5 64 25914.5 65 18602.0 66 13571.0 67 9946.0 68 7244.5 69 5178.0 70 3775.5 71 2642.5 72 1683.0 73 1002.0 74 576.0 75 321.5 76 192.0 77 111.0 78 62.0 79 36.5 80 21.0 81 13.5 82 12.0 83 11.0 84 8.0 85 3.0 86 1.0 87 1.5 88 1.0 89 0.5 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0038592114993020728 6 1.5947154955793688E-5 7 0.0 8 0.0 9 1.5947154955793688E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.5948535988190426E-5 26-27 0.0 28-29 6.380728668047616E-5 30-31 0.0 32-33 7.185230614766735E-5 34-35 0.0 36-37 6.001049463530182E-4 38-39 4.008700483529452E-5 40-41 2.0894051648327717E-4 42-43 7.251043284136078E-5 44-45 6.95076209448769E-4 46-47 0.0 48-49 1.3031957373119032E-4 50-51 8.174388480128593E-6 52-53 8.20065359209129E-5 54-55 0.0022871511713957356 56-57 0.0013045452668950996 58-59 9.93814827783485E-5 60-61 3.323813654043681E-4 62-63 1.0849680184811782E-4 64-65 8.04825060374455E-4 66-67 0.0014238925633461577 68-69 3.303850281704065E-4 70-71 7.667265224505193E-4 72-73 1.1994455134740568E-4 74-75 1.5506801024482654E-4 76-77 0.0 78-79 0.0014301321163025294 80-81 0.0 82-83 7.157036152928721E-4 84-85 1.0672433575440455E-4 86-87 0.0 88-89 7.214925877909927E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 2.809754606335116E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 23.0 20-21 149.0 22-23 287.0 24-25 403.0 26-27 703.0 28-29 1325.0 30-31 3873.0 32-33 5031.0 34-35 7280.0 36-37 11872.0 38-39 14196.0 40-41 15314.0 42-43 18292.0 44-45 23193.0 46-47 24333.0 48-49 22499.0 50-51 20189.0 52-53 19224.0 54-55 21152.0 56-57 23279.0 58-59 14255.0 60-61 26409.0 62-63 26398.0 64-65 28812.0 66-67 31805.0 68-69 32847.0 70-71 33490.0 72-73 31941.0 74-75 33454.0 76-77 35640.0 78-79 37286.0 80-81 37691.0 82-83 36983.0 84-85 37277.0 86-87 39457.0 88-89 41593.0 90-91 42909.0 92-93 44587.0 94-95 57245.0 96-97 217169.0 98-99 77294.0 100-101 5073552.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.11307315542456 #Duplication Level Percentage of deduplicated Percentage of total 1 91.40647520913042 80.5410543698161 2 6.283932973402955 11.073932915784782 3 1.3584313844488545 3.5908669186369973 4 0.475971406346333 1.67757213389139 5 0.1995171009119301 0.879003245420556 6 0.10009158455697516 0.5291626267386669 7 0.05329783470815567 0.32873652060658126 8 0.034186634406714 0.24098315347332364 9 0.020439589377155017 0.16208955306504888 >10 0.06663511959310055 0.8765999886672987 >50 7.59342817053518E-4 0.044947492904329284 >100 2.3617846335192177E-4 0.0436638004316776 >500 2.5641837053394677E-5 0.011387280563191217 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.1894309911587376E-5 0.0 0.0 0.0 3 0.0 4.7841464867381065E-5 0.0 0.0 0.0 4 0.0 9.568292973476213E-5 0.0 0.0 0.0 5 0.0 9.568292973476213E-5 0.0 0.0 0.0 6 1.5947154955793688E-5 9.568292973476213E-5 0.0 1.5947154955793688E-5 0.0 7 1.5947154955793688E-5 9.568292973476213E-5 0.0 1.5947154955793688E-5 0.0 8 1.5947154955793688E-5 9.568292973476213E-5 0.0 1.5947154955793688E-5 0.0 9 1.5947154955793688E-5 1.7541870451373058E-4 0.0 9.568292973476213E-5 0.0 10-11 2.3920732433690532E-5 1.9136585946952426E-4 0.0 1.435243946021432E-4 0.0 12-13 3.1894309911587376E-5 1.9136585946952426E-4 0.0 1.8339228199162742E-4 0.0 14-15 3.1894309911587376E-5 2.3920732433690533E-4 0.0 2.0731301442531797E-4 0.0 16-17 5.581504234527791E-5 2.3920732433690533E-4 0.0 2.2326016938111165E-4 0.0 18-19 7.17621973010716E-5 2.55154479292699E-4 0.0 2.631280567705959E-4 1.5947154955793688E-5 20-21 7.973577477896845E-5 2.55154479292699E-4 0.0 3.10969521637977E-4 1.5947154955793688E-5 22-23 7.973577477896845E-5 2.8704878920428643E-4 0.0 3.348902540716675E-4 1.5947154955793688E-5 24-25 8.770935225686529E-5 2.9502236668218324E-4 0.0 3.4286383154956434E-4 1.5947154955793688E-5 26-27 9.568292973476213E-5 3.029959441600801E-4 0.0 3.5083740902746115E-4 1.5947154955793688E-5 28-29 9.568292973476213E-5 3.10969521637977E-4 0.0 3.907052964169454E-4 1.5947154955793688E-5 30-31 9.568292973476213E-5 3.5083740902746115E-4 0.0 6.059918883201602E-4 2.3920732433690532E-5 32-33 1.0365650721265898E-4 3.5083740902746115E-4 0.0 0.0011960366216845267 3.1894309911587376E-5 34-35 1.275772396463495E-4 4.5449391624012017E-4 0.0 0.001993394369474211 3.1894309911587376E-5 36-37 1.4352439460214321E-4 5.581504234527791E-4 0.0 0.0033568761181945713 3.1894309911587376E-5 38-39 1.4352439460214321E-4 5.980183108422634E-4 0.0 0.009289217761749824 3.1894309911587376E-5 40-41 1.7541870451373058E-4 6.618069306654381E-4 0.0 0.015213585827827178 3.1894309911587376E-5 42-43 1.9136585946952426E-4 7.096483955328192E-4 0.0 0.01890535220009342 3.1894309911587376E-5 44-45 1.9136585946952426E-4 8.451992126570656E-4 0.0 0.023713419419265216 3.1894309911587376E-5 46-47 1.9136585946952426E-4 9.408821423918277E-4 0.0 0.028944086244765545 3.1894309911587376E-5 48-49 1.9136585946952426E-4 9.408821423918277E-4 0.0 0.03375215346393734 3.1894309911587376E-5 50-51 1.993394369474211E-4 0.001068459382038177 0.0 0.03930973696603145 4.7841464867381065E-5 52-53 2.0731301442531797E-4 0.0010923801144718677 0.0 0.05980980466170423 5.581504234527791E-5 54-55 2.0731301442531797E-4 0.0011242744243834552 0.0 0.08446410622336128 6.378861982317475E-5 56-57 2.0731301442531797E-4 0.0011641423117729392 0.0 0.11502682869613988 6.378861982317475E-5 58-59 2.0731301442531797E-4 0.001180089466728733 0.0 0.22243091732341036 6.378861982317475E-5 60-61 2.0731301442531797E-4 0.0012119837766403204 0.0 0.3144141071084284 6.378861982317475E-5 62-63 2.0731301442531797E-4 0.0012438780865519077 0.0 0.3189191783834401 6.378861982317475E-5 64-65 2.0731301442531797E-4 0.0013475345937645667 0.0 0.32253120898092735 6.378861982317475E-5 66-67 2.0731301442531797E-4 0.0013874024811540509 0.0 0.326191081043282 6.378861982317475E-5 68-69 2.0731301442531797E-4 0.0014033496361098446 0.0 0.32939645918939653 6.378861982317475E-5 70-71 2.0731301442531797E-4 0.0014033496361098446 0.0 0.3324423657859531 6.378861982317475E-5 72-73 2.0731301442531797E-4 0.0014033496361098446 0.0 0.3349939105788801 6.378861982317475E-5 74-75 2.0731301442531797E-4 0.0014272703685435351 0.0 0.33718664438530177 6.378861982317475E-5 76-77 2.2326016938111165E-4 0.0015468740307119878 0.0 0.33969832129083927 6.378861982317475E-5 78-79 2.3920732433690533E-4 0.0016186362280130595 0.0 0.3411016709269491 6.378861982317475E-5 80-81 2.3920732433690533E-4 0.0016266098054909563 0.0 0.34147642906841025 7.17621973010716E-5 82-83 2.3920732433690533E-4 0.0016266098054909563 0.0 0.3419309229846504 7.973577477896845E-5 84-85 2.55154479292699E-4 0.0016266098054909563 0.0 0.34213823599907567 7.973577477896845E-5 86-87 2.870487892042864E-4 0.0016266098054909563 0.0 0.3422578396612442 7.973577477896845E-5 88 3.029959441600801E-4 0.001690398425314131 0.0 0.3422578396612442 7.973577477896845E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6305 0.0 49.41168 1 GTATCAA 11255 0.0 36.800724 1 TCAACGC 13755 0.0 29.42775 4 ATCAACG 13830 0.0 29.203339 3 CAACGCA 14080 0.0 28.652977 5 TATCAAC 14775 0.0 27.69958 2 AACGCAG 14575 0.0 27.64778 6 ACGCAGA 16885 0.0 23.8388 7 CGCAGAG 17515 0.0 22.981339 8 AGAGTAC 18765 0.0 19.396196 10-11 CGAGACC 3105 0.0 19.389914 86-87 GCAGAGT 21205 0.0 18.918814 9 GAGTACT 12060 0.0 18.36068 12-13 GTACATG 15655 0.0 18.354174 1 AGACCGA 3395 0.0 18.042679 88-89 GAGACCG 3330 0.0 17.45953 88-89 TACATGG 15780 0.0 17.4418 2 CAGAGTA 20740 0.0 17.116919 10-11 GACCGAG 3465 0.0 17.087412 90-91 TCTCCGA 3440 0.0 17.053259 74-75 >>END_MODULE