##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138975_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5543698 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.033959642101717 30.0 18.0 32.0 18.0 33.0 2 27.168802665657473 29.0 25.0 32.0 18.0 33.0 3 29.57503312770645 31.0 28.0 33.0 25.0 33.0 4 29.583407140865177 31.0 29.0 33.0 25.0 33.0 5 32.09124090092931 33.0 32.0 33.0 32.0 33.0 6 36.08223554024768 38.0 36.0 38.0 33.0 38.0 7 36.58575719673041 38.0 37.0 38.0 34.0 38.0 8 36.90538716214339 38.0 38.0 38.0 35.0 38.0 9 36.99405505133938 38.0 38.0 38.0 35.0 38.0 10-11 37.093403807350256 38.0 38.0 38.0 36.0 38.0 12-13 37.14792968520291 38.0 38.0 38.0 36.0 38.0 14-15 37.15662469348078 38.0 38.0 38.0 36.0 38.0 16-17 37.130440096123564 38.0 38.0 38.0 36.0 38.0 18-19 37.1648277918458 38.0 38.0 38.0 36.0 38.0 20-21 37.1307869907542 38.0 38.0 38.0 36.0 38.0 22-23 37.16621588956389 38.0 38.0 38.0 36.0 38.0 24-25 37.17363724890022 38.0 38.0 38.0 36.0 38.0 26-27 37.11085828812367 38.0 38.0 38.0 36.0 38.0 28-29 37.10002505344836 38.0 38.0 38.0 36.0 38.0 30-31 36.96746017019436 38.0 38.0 38.0 36.0 38.0 32-33 37.06244914312935 38.0 38.0 38.0 36.0 38.0 34-35 37.075566281553485 38.0 38.0 38.0 36.0 38.0 36-37 36.998545090611 38.0 38.0 38.0 36.0 38.0 38-39 37.03902143243353 38.0 38.0 38.0 36.0 38.0 40-41 36.95615989817921 38.0 38.0 38.0 36.0 38.0 42-43 36.94735344356204 38.0 38.0 38.0 36.0 38.0 44-45 36.94940054296573 38.0 38.0 38.0 36.0 38.0 46-47 36.909084523182294 38.0 38.0 38.0 36.0 38.0 48-49 36.877454486520236 38.0 38.0 38.0 35.0 38.0 50-51 36.8969607012386 38.0 38.0 38.0 35.0 38.0 52-53 36.80842619069997 38.0 38.0 38.0 35.0 38.0 54-55 36.79681743462457 38.0 38.0 38.0 35.0 38.0 56-57 36.804498992102054 38.0 38.0 38.0 35.0 38.0 58-59 36.824229015293355 38.0 38.0 38.0 35.0 38.0 60-61 36.819915044192214 38.0 38.0 38.0 35.0 38.0 62-63 36.826271370512266 38.0 38.0 38.0 35.0 38.0 64-65 36.78148412813395 38.0 38.0 38.0 35.0 38.0 66-67 36.78352114386666 38.0 38.0 38.0 35.0 38.0 68-69 36.79766464010302 38.0 38.0 38.0 35.0 38.0 70-71 36.71526447564961 38.0 38.0 38.0 35.0 38.0 72-73 36.66967317062658 38.0 38.0 38.0 34.0 38.0 74-75 36.71906823138217 38.0 38.0 38.0 34.5 38.0 76-77 36.69592548705327 38.0 38.0 38.0 34.0 38.0 78-79 36.71083243821677 38.0 38.0 38.0 34.5 38.0 80-81 36.73081951172219 38.0 38.0 38.0 35.0 38.0 82-83 36.598138855674975 38.0 38.0 38.0 34.0 38.0 84-85 36.624595762934675 38.0 38.0 38.0 34.0 38.0 86-87 36.62712646759806 38.0 38.0 38.0 34.0 38.0 88-89 36.570429406136185 38.0 38.0 38.0 34.0 38.0 90-91 36.569787171039216 38.0 38.0 38.0 34.0 38.0 92-93 36.61651785262278 38.0 38.0 38.0 34.0 38.0 94-95 36.505242834940816 38.0 38.0 38.0 34.0 38.0 96-97 36.44655409898999 38.0 38.0 38.0 34.0 38.0 98-99 36.5225187181 38.0 38.0 38.0 34.0 38.0 100 34.9378466982057 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 18.0 19 29.0 20 70.0 21 189.0 22 570.0 23 1648.0 24 3922.0 25 7843.0 26 13683.0 27 22047.0 28 33124.0 29 46756.0 30 63180.0 31 83308.0 32 110606.0 33 152522.0 34 225581.0 35 405591.0 36 1128309.0 37 3244700.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.273693841186876 22.635360006984506 14.9061510926461 24.18479505918252 2 13.244444412376 23.388521524801675 40.78059446961216 22.586439593210166 3 16.932289601634142 27.649161263835083 31.49810830243639 23.92044083209439 4 12.176673404647945 19.172472959385594 40.61581276613553 28.035040869830937 5 12.68975875468974 38.707520863225774 36.07861551377599 12.524104868308497 6 27.92870390847409 39.848707487312616 19.779486544901978 12.443102059311311 7 24.551756706760848 33.50774762762106 25.2055622809111 16.73493338470699 8 23.16987685837143 37.54986292543353 22.482862522453424 16.797397693741615 9 24.987364030291694 16.969503028483874 22.45365818989418 35.58947475133024 10-11 22.992702704945327 27.605526130752434 30.22510425351453 19.17666691078771 12-13 23.82461129736865 25.2290709198084 30.287571581280222 20.658746201542723 14-15 21.276853464961476 26.552555712811195 27.66696526398083 24.5036255582465 16-17 20.858865327801045 29.438318970477827 28.452181197460614 21.250634504260514 18-19 20.91549720060508 28.85780394242255 29.87036811889825 20.356330738074117 20-21 21.704800107221832 28.057215764279363 29.567025100984967 20.670959027513838 22-23 21.462537929646086 27.97252884330747 29.42003832605723 21.144894900989215 24-25 21.263268413418867 28.08736406866742 29.462570626564972 21.18679689134874 26-27 21.201883329717557 28.281337598894428 29.382279940301387 21.134499131086624 28-29 21.220393243175824 28.286931810236354 29.401963157439365 21.090711789148457 30-31 21.413201209747037 28.053850006132485 29.427066858008686 21.10588192611179 32-33 21.290630862038647 28.2168709669874 29.286606237084946 21.205891933889006 34-35 21.356854259345653 28.21659603982896 29.32381284947132 21.102736851354063 36-37 21.388013446434012 28.173411383120623 29.292206472556064 21.146368697889297 38-39 21.267811940869088 28.20653019565343 29.346635865841584 21.179021997635893 40-41 21.446584888737693 28.09318369758685 29.281981206214002 21.178250207461453 42-43 21.390465441265302 28.147571862331766 29.12930636898815 21.332656327414785 44-45 21.400712018844086 28.243283129548324 29.05365772327098 21.30234712833661 46-47 21.445036018297543 28.15610819759841 28.92342481034126 21.475430973762784 48-49 21.401367608150736 28.306862779875715 28.874978059577515 21.416791552396035 50-51 21.333378219254655 28.41180785816838 28.799180141383253 21.45563378119371 52-53 21.462563547268665 28.259973840655086 28.73302029669176 21.544442315384494 54-55 21.535432676857592 28.129212781391093 28.84504044084806 21.49031410090326 56-57 21.51893805207998 28.024415775762616 28.807012628520244 21.649633543637155 58-59 21.299873299517476 28.060423301497895 28.94631559838869 21.693387800595946 60-61 21.501730536088697 28.172097925097518 28.985369362096442 21.340802176717343 62-63 21.255497924292442 28.299706262945406 28.963100247064617 21.481695565697535 64-65 21.16677136682009 28.428309718467492 28.798754650886078 21.60616426382634 66-67 21.259958077816577 28.690783687411447 28.555487735904418 21.493770498867555 68-69 21.243761972074815 28.6924614324384 28.454049050889985 21.609727544596797 70-71 21.262406026475183 28.335408957223585 28.453679814708355 21.948505201592877 72-73 21.396046328420574 28.081084847006572 28.467970318333833 22.054898506239017 74-75 21.403764171246078 28.165392749560787 28.517896320222697 21.91294675897044 76-77 21.599336717457117 28.0411448057066 28.25006788976768 22.1094505870686 78-79 21.66244224019581 28.119363049837375 27.991212355610916 22.2269823543559 80-81 21.64339907708341 28.306227587077192 27.990399864972776 22.059973470866623 82-83 21.619112306218604 28.2031112519618 28.08088434946224 22.096892092357354 84-85 21.70285623561929 28.372988905981693 28.02724050377131 21.896914354627704 86-87 21.820159068134377 28.36132606645797 28.05051441397871 21.76800045142894 88-89 21.80215727082049 28.375262182456613 28.15233334757409 21.67024719914881 90-91 21.788033593762417 28.216319709902816 28.12882292104112 21.866823775293643 92-93 21.811794176974907 27.979397097897913 28.237988172607213 21.970820552519964 94-95 21.407490390179877 28.301674161202893 28.468921239648537 21.821914208968693 96-97 21.49247571929457 28.24780525279075 28.62768315220353 21.632035875711146 98-99 22.602468990689403 30.129932615971413 28.9749264821988 18.292671911140392 100 21.496995463782156 31.189947404275348 22.838687561641287 24.474369570301207 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 510.0 1 606.5 2 1093.5 3 1669.5 4 2209.0 5 3033.5 6 3685.0 7 4567.0 8 5523.0 9 5832.0 10 5733.0 11 5645.5 12 6186.0 13 7605.5 14 10269.0 15 13425.0 16 15599.5 17 16314.0 18 15829.5 19 14903.0 20 14216.0 21 14301.0 22 15904.5 23 19622.0 24 25730.5 25 34184.5 26 45215.5 27 58179.5 28 72276.5 29 87691.0 30 102835.5 31 117380.5 32 133031.0 33 148463.5 34 162432.0 35 174754.0 36 187213.0 37 199037.5 38 206632.5 39 212207.0 40 218297.5 41 222667.5 42 224107.5 43 223573.5 44 223313.5 45 225187.0 46 222876.0 47 216529.0 48 210335.0 49 202883.5 50 193814.0 51 183015.0 52 171088.0 53 158246.5 54 144805.5 55 131188.0 56 117209.0 57 102828.5 58 89338.0 59 74984.5 60 59763.0 61 46427.0 62 35095.5 63 25779.0 64 18531.5 65 13246.5 66 9585.5 67 6940.0 68 4895.0 69 3444.0 70 2440.5 71 1721.0 72 1186.5 73 764.0 74 492.5 75 308.0 76 164.5 77 86.0 78 52.5 79 34.5 80 26.5 81 19.5 82 13.0 83 7.5 84 3.5 85 2.5 86 2.0 87 1.0 88 0.0 89 1.0 90 1.5 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0038241621387023607 6 0.0 7 1.8038500654256417E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 9.0199947124791E-6 26-27 0.0 28-29 4.510971042452929E-5 30-31 0.0 32-33 3.612443676358642E-5 34-35 0.0 36-37 6.698730653907455E-4 38-39 5.440557287164039E-5 40-41 2.544139225474975E-4 42-43 8.199867581249528E-5 44-45 7.769678218319549E-4 46-47 0.0 48-49 1.0135198013206347E-4 50-51 0.0 52-53 1.1113495367478375E-4 54-55 0.0024833596371774506 56-57 0.0013164868750430525 58-59 1.6696719215261618E-4 60-61 4.3753108099780174E-4 62-63 1.2159137292373379E-4 64-65 8.740600682274372E-4 66-67 0.0016159274885141574 68-69 3.8977867226173355E-4 70-71 7.558103157201466E-4 72-73 2.0221963980252577E-4 74-75 1.6468028340120583E-4 76-77 9.747273663188222E-6 78-79 0.001658277808828239 80-81 9.88196780020084E-6 82-83 9.455574872576175E-4 84-85 1.5034695566959873E-4 86-87 0.0 88-89 8.137567201047143E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 2.64538227361083E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 27.0 20-21 126.0 22-23 234.0 24-25 326.0 26-27 649.0 28-29 1356.0 30-31 3509.0 32-33 4678.0 34-35 6906.0 36-37 11047.0 38-39 8313.0 40-41 14655.0 42-43 16838.0 44-45 21128.0 46-47 22073.0 48-49 20501.0 50-51 11734.0 52-53 2979.0 54-55 2794.0 56-57 2834.0 58-59 13520.0 60-61 25442.0 62-63 25312.0 64-65 28045.0 66-67 31260.0 68-69 32221.0 70-71 35085.0 72-73 30814.0 74-75 31431.0 76-77 33406.0 78-79 35582.0 80-81 36458.0 82-83 35339.0 84-85 34857.0 86-87 36990.0 88-89 39450.0 90-91 40540.0 92-93 41676.0 94-95 52110.0 96-97 184968.0 98-99 435731.0 100-101 4130754.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.32138587189225 #Duplication Level Percentage of deduplicated Percentage of total 1 90.03583910115204 77.7201840935015 2 7.238179075816439 12.496192980268146 3 1.6160575801612433 4.185009899048853 4 0.5509899006947656 1.9024884731755385 5 0.22857532873747946 0.9865469576371294 6 0.11565575830680896 0.5990139204665018 7 0.07058590179440019 0.4265151006136938 8 0.03657227603475762 0.2525575641447736 9 0.026407420664460463 0.20515726341524457 >10 0.07930531197356783 1.0206067453098475 >50 0.0011082772373775447 0.06647397768527154 >100 6.621853505290932E-4 0.11083493316753211 >500 6.188207610931411E-5 0.028418091565948923 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.8038500654256417E-5 0.0 2 0.0 0.0 0.0 1.8038500654256417E-5 0.0 3 0.0 0.0 0.0 1.8038500654256417E-5 0.0 4 0.0 0.0 0.0 1.8038500654256417E-5 0.0 5 0.0 0.0 0.0 1.8038500654256417E-5 0.0 6 1.8038500654256418E-4 0.0 0.0 1.8038500654256417E-5 0.0 7 1.8038500654256418E-4 0.0 0.0 1.8038500654256417E-5 0.0 8 1.8038500654256418E-4 0.0 0.0 3.6077001308512835E-5 0.0 9 1.8038500654256418E-4 3.6077001308512835E-5 0.0 3.6077001308512835E-5 0.0 10-11 1.984235071968206E-4 3.6077001308512835E-5 0.0 7.215400261702567E-5 0.0 12-13 1.984235071968206E-4 3.6077001308512835E-5 0.0 8.117325294415388E-5 0.0 14-15 2.074427575239488E-4 3.6077001308512835E-5 0.0 9.019250327128209E-5 0.0 16-17 3.6077001308512836E-4 5.4115501962769256E-5 0.0 9.019250327128209E-5 0.0 18-19 3.6077001308512836E-4 8.117325294415388E-5 0.0 1.0823100392553851E-4 0.0 20-21 3.6077001308512836E-4 1.0823100392553851E-4 0.0 1.1725025425266672E-4 0.0 22-23 3.6077001308512836E-4 1.4430800523405134E-4 0.0 1.4430800523405134E-4 0.0 24-25 3.6978926341225656E-4 1.4430800523405134E-4 0.0 1.4430800523405134E-4 0.0 26-27 3.968470143936412E-4 1.4430800523405134E-4 0.0 1.7136575621543596E-4 0.0 28-29 4.1488551504789765E-4 1.5332725556117956E-4 0.0 2.5253900915958984E-4 0.0 30-31 4.1488551504789765E-4 1.8038500654256418E-4 0.0 4.8703951766492333E-4 0.0 32-33 4.2390476537502585E-4 1.984235071968206E-4 0.0 0.0014430800523405134 0.0 34-35 4.690010170106669E-4 2.074427575239488E-4 0.0 0.0030394873602422063 0.0 36-37 5.050780183191797E-4 2.3450050850533344E-4 0.0 0.007107169257777029 0.0 38-39 5.050780183191797E-4 2.3450050850533344E-4 0.0 0.06459587084289223 0.0 40-41 5.231165189734362E-4 2.886160104681027E-4 0.0 0.12613421582488799 0.0 42-43 5.231165189734362E-4 2.886160104681027E-4 0.0 0.13839137701945525 0.0 44-45 5.231165189734362E-4 2.886160104681027E-4 0.0 0.1556993183972143 0.0 46-47 5.231165189734362E-4 3.066545111223591E-4 0.0 0.17596557388227135 0.0 48-49 5.231165189734362E-4 3.3371226210374377E-4 0.0 0.19597929035816886 0.0 50-51 5.682127706090772E-4 4.1488551504789765E-4 0.0 0.21806743440930584 0.0 52-53 5.952705215904619E-4 4.1488551504789765E-4 0.0 0.45434473522908353 0.0 54-55 5.952705215904619E-4 4.2390476537502585E-4 0.0 0.7731481765420845 0.0 56-57 5.952705215904619E-4 4.3292401570215405E-4 0.0 1.1302653932447257 0.0 58-59 5.952705215904619E-4 4.4194326602928224E-4 0.0 1.5167492890124967 0.0 60-61 6.223282725718465E-4 4.599817666835387E-4 0.0 1.6265045462433199 0.0 62-63 6.313475228989746E-4 4.690010170106669E-4 0.0 1.63165453818011 0.0 64-65 6.313475228989746E-4 5.050780183191797E-4 0.0 1.6358575088325518 0.0 66-67 6.674245242074875E-4 5.050780183191797E-4 0.0 1.6393750164601317 0.0 68-69 6.854630248617439E-4 5.140972686463079E-4 0.0 1.642766254583132 0.0 70-71 7.395785268245131E-4 5.231165189734362E-4 0.0 1.6456704531884672 0.0 72-73 7.576170274787696E-4 5.501742699548207E-4 0.0 1.6481597662787548 0.0 74-75 7.576170274787696E-4 5.772320209362054E-4 0.0 1.6506039831174064 0.0 76-77 7.576170274787696E-4 6.133090222447183E-4 0.0 1.6526333144410104 0.0 78-79 7.75655528133026E-4 6.313475228989746E-4 0.0 1.6540763944933508 0.0 80-81 7.75655528133026E-4 6.313475228989746E-4 0.0 1.6544822607580716 0.0 82-83 7.75655528133026E-4 6.313475228989746E-4 0.0 1.6548340115208295 0.0 84-85 7.75655528133026E-4 6.403667732261028E-4 0.0 1.6550324350280263 0.0 86-87 7.75655528133026E-4 6.854630248617439E-4 0.0 1.6551767430332605 0.0 88 8.297710300957953E-4 7.215400261702567E-4 0.0 1.6551767430332605 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5530 0.0 43.876755 1 GTATCAA 9460 0.0 36.74286 1 ATCAACG 11325 0.0 30.09801 3 TCAACGC 11385 0.0 29.97878 4 CAACGCA 11545 0.0 29.485617 5 AACGCAG 11985 0.0 28.514875 6 TATCAAC 12645 0.0 27.417198 2 ATCTCGT 3990 0.0 25.218084 94 ACGCAGA 14030 0.0 24.262674 7 CGCAGAG 14435 0.0 23.644081 8 TATCTCG 4335 0.0 22.655153 94 AGAGTAC 15855 0.0 19.602955 10-11 GCAGAGT 17750 0.0 19.20303 9 GTACATG 13775 0.0 18.4935 1 TACATGG 13690 0.0 18.18243 2 ACATGGG 13495 0.0 18.013113 3 CAGAGTA 17660 0.0 16.862886 9 CGCTATC 5980 0.0 16.826113 94 GAGTACT 10185 0.0 16.601023 12-13 AGTACTT 11815 0.0 16.1328 12-13 >>END_MODULE