##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138974_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6591047 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.503247966521858 32.0 28.0 33.0 18.0 34.0 2 31.585423378106697 33.0 31.0 33.0 28.0 34.0 3 32.35790216637812 33.0 33.0 34.0 30.0 34.0 4 32.61615036275724 33.0 33.0 34.0 31.0 34.0 5 32.96227109289313 33.0 33.0 34.0 32.0 34.0 6 36.50974526505425 38.0 37.0 38.0 34.0 38.0 7 36.63333033431562 38.0 37.0 38.0 34.0 38.0 8 36.681885897642665 38.0 38.0 38.0 34.0 38.0 9 36.92798913435149 38.0 38.0 38.0 35.0 38.0 10-11 37.059021351236005 38.0 38.0 38.0 36.0 38.0 12-13 37.11927573874075 38.0 38.0 38.0 36.0 38.0 14-15 37.12135090221629 38.0 38.0 38.0 36.0 38.0 16-17 37.07783543342962 38.0 38.0 38.0 36.0 38.0 18-19 37.12123134609721 38.0 38.0 38.0 36.0 38.0 20-21 37.0947526106974 38.0 38.0 38.0 36.0 38.0 22-23 37.13933386660235 38.0 38.0 38.0 36.0 38.0 24-25 37.14586880082429 38.0 38.0 38.0 36.0 38.0 26-27 37.08013348931766 38.0 38.0 38.0 36.0 38.0 28-29 37.067606265430285 38.0 38.0 38.0 36.0 38.0 30-31 36.93719417655925 38.0 38.0 38.0 36.0 38.0 32-33 37.034803750631674 38.0 38.0 38.0 36.0 38.0 34-35 37.047115268209 38.0 38.0 38.0 36.0 38.0 36-37 36.97401786402732 38.0 38.0 38.0 36.0 38.0 38-39 36.99818611910266 38.0 38.0 38.0 36.0 38.0 40-41 36.93145212189056 38.0 38.0 38.0 36.0 38.0 42-43 36.91554963433975 38.0 38.0 38.0 35.5 38.0 44-45 36.91236809165527 38.0 38.0 38.0 36.0 38.0 46-47 36.86763183397943 38.0 38.0 38.0 35.0 38.0 48-49 36.83459899833729 38.0 38.0 38.0 35.0 38.0 50-51 36.85107168158021 38.0 38.0 38.0 35.0 38.0 52-53 36.75926238742889 38.0 38.0 38.0 35.0 38.0 54-55 36.74353338468306 38.0 38.0 38.0 35.0 38.0 56-57 36.74435514466412 38.0 38.0 38.0 35.0 38.0 58-59 36.7601240064845 38.0 38.0 38.0 35.0 38.0 60-61 36.75167951543363 38.0 38.0 38.0 35.0 38.0 62-63 36.755419319474186 38.0 38.0 38.0 35.0 38.0 64-65 36.70702553239479 38.0 38.0 38.0 35.0 38.0 66-67 36.71054192346525 38.0 38.0 38.0 35.0 38.0 68-69 36.71907502719341 38.0 38.0 38.0 35.0 38.0 70-71 36.630721095611506 38.0 38.0 38.0 34.0 38.0 72-73 36.585431820667516 38.0 38.0 38.0 34.0 38.0 74-75 36.6354609788133 38.0 38.0 38.0 34.0 38.0 76-77 36.612577669850026 38.0 38.0 38.0 34.0 38.0 78-79 36.63003840193724 38.0 38.0 38.0 34.0 38.0 80-81 36.65636485901739 38.0 38.0 38.0 34.0 38.0 82-83 36.524653783271894 38.0 38.0 38.0 34.0 38.0 84-85 36.5403610502248 38.0 38.0 38.0 34.0 38.0 86-87 36.53916768999082 38.0 38.0 38.0 34.0 38.0 88-89 36.487470736793696 38.0 38.0 38.0 34.0 38.0 90-91 36.487328173071944 38.0 38.0 38.0 34.0 38.0 92-93 36.535179893363264 38.0 38.0 38.0 34.0 38.0 94-95 36.43509334303464 38.0 38.0 38.0 34.0 38.0 96-97 36.394325659645766 38.0 38.0 38.0 34.0 38.0 98-99 36.46562301545873 38.0 38.0 38.0 34.0 38.0 100 34.83802624355249 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 17.0 20 41.0 21 210.0 22 807.0 23 2247.0 24 5401.0 25 10689.0 26 18045.0 27 28116.0 28 41272.0 29 58143.0 30 78088.0 31 101336.0 32 131411.0 33 175039.0 34 251483.0 35 421241.0 36 1052241.0 37 4215217.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.669425358368706 19.838972472810465 15.231570947680998 26.26003122113983 2 13.081730413999477 20.912656213800325 43.65564378466729 22.349969587532907 3 16.15474749307659 27.655044790304178 31.607224163323366 24.582983553295858 4 11.450441788686987 19.838790407654507 39.93966360731459 28.77110419634392 5 12.936622718643639 37.68169222141841 36.54509547831407 12.836589581623883 6 27.885315927092602 39.55980583355055 19.842783679555566 12.712094559801281 7 24.78273937357752 33.40915335606012 24.756521991119165 17.05158527924319 8 23.306752326299602 37.23846909299843 22.36191002734467 17.092868553357306 9 24.81772999308456 17.09607245951553 22.274962122855765 35.811235424544144 10-11 22.943433721531648 27.44894703375655 30.126905482543215 19.480713762168588 12-13 23.998296477024063 25.003280965831376 30.029257870562905 20.969164686581664 14-15 21.358002757376788 26.422145070426595 27.42134140448399 24.798510767712624 16-17 21.036384659372022 29.41995406799557 28.198956857688923 21.344704414943482 18-19 21.015242343136077 28.618222567673996 29.677796259076892 20.688738830113028 20-21 21.74979985842729 27.75148292141683 29.452669220619548 21.046047999536334 22-23 21.495240390673583 27.849759043758425 29.327958806318488 21.3270417592495 24-25 21.37600043214769 28.003193158713596 29.385792643914627 21.235013765224085 26-27 21.29199781235944 28.100156485498385 29.38983402703715 21.21801167510503 28-29 21.056741647986225 27.926735626834937 29.469778965919254 21.546743759259588 30-31 21.338915882854543 27.744937017876765 29.530494828624388 21.38565227064431 32-33 21.197351577769787 27.933804496072046 29.49867760574688 21.370166320411286 34-35 21.295497236454285 28.167737592977954 29.501472951972403 21.035292218595362 36-37 21.35848080708402 28.023861027809748 29.20950822983181 21.408149935274416 38-39 21.287869941901572 27.94785086078045 29.45974468810213 21.30453450921585 40-41 21.447279894567792 27.817470796546246 29.416166374585963 21.319082934300003 42-43 21.54625499764487 27.835379790097946 29.28962441203894 21.32874080021824 44-45 21.42181270025646 28.08194903701328 29.139674480999584 21.356563781730674 46-47 21.5972743628057 27.918488845704214 28.825231452077194 21.659005339412886 48-49 21.542634375470687 27.97427579391219 28.88328268744256 21.599807143174562 50-51 21.399782388878968 28.080299816953808 28.940799664303242 21.579118129863982 52-53 21.514889691629605 28.158234907027648 28.943039648190155 21.383835753152592 54-55 21.515979058984414 28.135329083036815 28.760052008819052 21.588639849159716 56-57 21.687479613472238 28.264275954933492 28.501149522852764 21.547094908741503 58-59 21.362274139337188 28.428261913383295 28.900421014124422 21.30904293315509 60-61 21.616581225215914 28.625962773020717 28.544778336534645 21.212677665228725 62-63 21.397690438663894 28.806617918949325 28.478405106512426 21.317286535874352 64-65 21.398259945965545 28.706930824113737 28.479674862492033 21.41513436742869 66-67 21.498589015594092 28.686418175295376 28.33381760471447 21.481175204396063 68-69 21.435192873858234 28.569923588569317 28.49741241203459 21.497471125537857 70-71 21.5159930968241 28.268879480050597 28.530296717029557 21.684830706095745 72-73 21.62963714996166 28.081868385472735 28.582970327760854 21.70552413680475 74-75 21.553395283501345 28.21795231472088 28.506575236122355 21.72207716565542 76-77 21.62388830663338 28.177042760549753 28.41245074018635 21.786618192630517 78-79 21.577890234589557 28.152810305985394 28.45893734083571 21.81036211858934 80-81 21.588123785243262 28.205586871537786 28.44960938236976 21.756679960849194 82-83 21.659736202022405 28.162209319174075 28.481587317898626 21.696467160904888 84-85 21.738104950436846 28.182695085695116 28.36426893361254 21.714931030255496 86-87 21.607109941702237 28.19095318469151 28.467894666459447 21.734042207146807 88-89 21.702133826416432 28.149304138691562 28.383592743059733 21.764969291832273 90-91 21.720332070206734 28.143982082955738 28.41712907108132 21.718556775756213 92-93 21.705682842964418 28.15668782027252 28.433450436635454 21.704178900127612 94-95 21.582578812937914 28.236843509127606 28.444455570090778 21.736122107843702 96-97 21.66781774855994 28.359939533468314 28.504977755160027 21.467264962811715 98-99 22.688200177817723 30.252847024387396 28.790348634050595 18.268604163744286 100 21.590649188324722 31.153010717455416 22.723132040179063 24.5332080540408 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 965.0 1 951.5 2 1469.5 3 2134.5 4 2731.5 5 3813.0 6 4627.0 7 5378.5 8 6264.5 9 6655.5 10 6710.5 11 6858.5 12 7605.5 13 9341.5 14 12527.5 15 16330.5 16 19443.5 17 21569.0 18 21940.0 19 20865.0 20 19972.5 21 19923.5 22 22171.5 23 27189.0 24 34741.5 25 45288.0 26 58736.0 27 73443.5 28 88904.5 29 106948.5 30 124941.0 31 142400.0 32 160849.0 33 178200.0 34 194508.5 35 209421.0 36 224958.5 37 239275.5 38 248891.5 39 255445.0 40 263480.0 41 270048.0 42 274050.0 43 282436.0 44 290159.0 45 290820.5 46 284286.5 47 274067.0 48 261855.0 49 250231.5 50 240728.0 51 228736.0 52 213603.0 53 196771.5 54 179738.0 55 162327.5 56 145020.0 57 128128.5 58 110300.5 59 92567.5 60 75642.5 61 60225.0 62 46926.0 63 35418.5 64 25675.0 65 18505.0 66 13399.0 67 9885.5 68 7337.5 69 5267.5 70 3676.5 71 2528.0 72 1713.5 73 1093.5 74 681.5 75 424.0 76 266.0 77 161.5 78 98.5 79 63.5 80 36.0 81 21.0 82 17.5 83 13.5 84 11.5 85 10.0 86 8.0 87 8.0 88 6.5 89 2.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.003504754252245508 6 1.5172096330067134E-5 7 0.0 8 0.0 9 1.5172096330067134E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.5173722814473697E-5 26-27 0.0 28-29 3.7945229400540505E-5 30-31 0.0 32-33 3.0407722710152142E-5 34-35 0.0 36-37 4.885213884968633E-4 38-39 5.363306144180534E-5 40-41 2.0005487659153275E-4 42-43 5.409644561622498E-5 44-45 7.147109895204724E-4 46-47 0.0 48-49 5.505697531764335E-5 50-51 0.0 52-53 8.747524649331617E-5 54-55 0.0021901672680301122 56-57 0.0011172777519535683 58-59 1.132061435356866E-4 60-61 3.337227579467325E-4 62-63 1.3931958445721212E-4 64-65 7.756397625288101E-4 66-67 0.0013721296191808085 68-69 3.103418398590813E-4 70-71 6.179838201677242E-4 72-73 1.7946214681849505E-4 74-75 1.2051765777375477E-4 76-77 8.67383784884658E-6 78-79 0.0016787216953969978 80-81 0.0 82-83 0.001004490963537067 84-85 1.7922566626245304E-4 86-87 0.0 88-89 8.203056641194656E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 2.949856717846681E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 51.0 20-21 189.0 22-23 371.0 24-25 519.0 26-27 1014.0 28-29 2384.0 30-31 7138.0 32-33 9543.0 34-35 14243.0 36-37 23141.0 38-39 27329.0 40-41 27768.0 42-43 31892.0 44-45 38877.0 46-47 40034.0 48-49 37722.0 50-51 33519.0 52-53 31764.0 54-55 34178.0 56-57 36561.0 58-59 39008.0 60-61 42398.0 62-63 41219.0 64-65 45758.0 66-67 50090.0 68-69 51958.0 70-71 60592.0 72-73 42998.0 74-75 43240.0 76-77 45109.0 78-79 47142.0 80-81 47218.0 82-83 45174.0 84-85 45562.0 86-87 47370.0 88-89 49700.0 90-91 49969.0 92-93 50984.0 94-95 62406.0 96-97 206801.0 98-99 469744.0 100-101 4608370.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.44192217186706 #Duplication Level Percentage of deduplicated Percentage of total 1 89.85270026094429 76.77187422627702 2 7.085777371476955 12.108448774018216 3 1.7125033253691295 4.389587275357581 4 0.6292444729968381 2.1505542915549336 5 0.2870713859781266 1.2263965509256554 6 0.1511054522700606 0.7746444175561975 7 0.08564207104990659 0.512219621849854 8 0.0532761076022769 0.3641610431499007 9 0.03713721313007333 0.28557673865457883 >10 0.10422278562065444 1.301900651537958 >50 0.001065045479995994 0.05869525294414511 >100 2.2691951889780478E-4 0.043636468631766526 >500 2.7588562800659674E-5 0.012304687542080632 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.5172096330067136E-5 0.0 0.0 0.0 3 0.0 1.5172096330067136E-5 0.0 0.0 0.0 4 0.0 1.5172096330067136E-5 0.0 0.0 0.0 5 0.0 1.5172096330067136E-5 0.0 0.0 0.0 6 1.0620467431046994E-4 1.5172096330067136E-5 0.0 0.0 0.0 7 1.0620467431046994E-4 1.5172096330067136E-5 0.0 0.0 0.0 8 1.0620467431046994E-4 1.5172096330067136E-5 0.0 0.0 0.0 9 1.0620467431046994E-4 4.551628899020141E-5 0.0 3.034419266013427E-5 0.0 10-11 1.1379072247550352E-4 4.551628899020141E-5 0.0 6.068838532026854E-5 0.0 12-13 1.2137677064053709E-4 4.551628899020141E-5 0.0 6.82744334853021E-5 0.0 14-15 1.2137677064053709E-4 1.2896281880557064E-4 0.0 7.586048165033567E-5 1.5172096330067136E-5 16-17 1.5172096330067134E-4 1.365488669706042E-4 0.0 7.586048165033567E-5 3.034419266013427E-5 18-19 1.5172096330067134E-4 1.896512041258392E-4 0.0 1.0620467431046994E-4 3.034419266013427E-5 20-21 1.5172096330067134E-4 2.730977339412084E-4 0.0 1.0620467431046994E-4 3.034419266013427E-5 22-23 1.5172096330067134E-4 2.8068378210624196E-4 0.0 1.2137677064053707E-4 3.034419266013427E-5 24-25 1.5930701146570493E-4 3.0344192660134274E-4 0.0 1.365488669706042E-4 3.034419266013427E-5 26-27 1.668930596307385E-4 3.1861402293140986E-4 0.0 1.5172096330067134E-4 3.034419266013427E-5 28-29 1.668930596307385E-4 3.1861402293140986E-4 0.0 2.80683782106242E-4 3.034419266013427E-5 30-31 1.668930596307385E-4 3.5654426375657765E-4 0.0 8.572234426487931E-4 3.034419266013427E-5 32-33 1.668930596307385E-4 3.6413031192161126E-4 0.0 0.002419949364645708 3.034419266013427E-5 34-35 1.668930596307385E-4 3.9447450458174555E-4 0.0 0.004475768417369805 3.034419266013427E-5 36-37 1.668930596307385E-4 4.248186972418798E-4 0.0 0.008602578619148066 3.034419266013427E-5 38-39 1.7447910779577205E-4 4.399907935719469E-4 0.0 0.02107404180246325 3.034419266013427E-5 40-41 1.8206515596080563E-4 4.8550708256214835E-4 0.0 0.03441031447659226 3.034419266013427E-5 42-43 1.9723725229087275E-4 4.930931307271819E-4 0.0 0.04257290230216838 3.793024082516784E-5 44-45 1.9723725229087275E-4 5.08265227057249E-4 0.0 0.05246510910937215 4.551628899020141E-5 46-47 1.9723725229087275E-4 5.158512752222826E-4 0.0 0.063502809189496 4.551628899020141E-5 48-49 1.9723725229087275E-4 5.234373233873161E-4 0.0 0.07384259283843675 4.551628899020141E-5 50-51 2.4275354128107417E-4 6.068838532026854E-4 0.0 0.08493339525571583 4.551628899020141E-5 52-53 2.4275354128107417E-4 6.372280458628197E-4 0.0 0.11500449018190889 6.068838532026854E-5 54-55 2.4275354128107417E-4 6.751582866879875E-4 0.0 0.15106097711031344 7.586048165033567E-5 56-57 2.4275354128107417E-4 6.979164311830882E-4 0.0 0.19255666057304704 8.344652981536924E-5 58-59 2.4275354128107417E-4 7.130885275131553E-4 0.0 0.2301075989899632 9.103257798040281E-5 60-61 2.9585587843630913E-4 7.282606238432224E-4 0.0 0.2436714531090432 9.103257798040281E-5 62-63 3.33786119261477E-4 7.586048165033568E-4 0.0 0.26004214504918566 9.103257798040281E-5 64-65 3.33786119261477E-4 8.572234426487931E-4 0.0 0.2665358022784544 9.103257798040281E-5 66-67 3.33786119261477E-4 9.027397316389946E-4 0.0 0.2718536220421429 9.103257798040281E-5 68-69 3.33786119261477E-4 9.406699724641624E-4 0.0 0.2771410976131713 9.103257798040281E-5 70-71 3.33786119261477E-4 9.634281169592631E-4 0.0 0.2817003125603565 9.103257798040281E-5 72-73 3.793024082516784E-4 9.710141651242967E-4 0.0 0.28499265746398106 9.103257798040281E-5 74-75 3.793024082516784E-4 0.001016530454114498 0.0 0.2875719138400925 9.103257798040281E-5 76-77 3.793024082516784E-4 0.0010544606949396658 0.0 0.2903256493239996 9.103257798040281E-5 78-79 3.793024082516784E-4 0.0010620467431046994 0.0 0.2920780264501224 9.103257798040281E-5 80-81 3.793024082516784E-4 0.0010620467431046994 0.0 0.29262422191800486 9.103257798040281E-5 82-83 3.793024082516784E-4 0.0010620467431046994 0.0 0.2930945569042369 9.103257798040281E-5 84-85 3.793024082516784E-4 0.0010923909357648336 0.0 0.29328420810836275 9.103257798040281E-5 86-87 3.793024082516784E-4 0.0010923909357648336 0.0 0.29335248254184804 9.103257798040281E-5 88 3.793024082516784E-4 0.0011530793210851023 0.0 0.29335248254184804 9.103257798040281E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6855 0.0 47.436768 1 GTATCAA 12595 0.0 37.963722 1 ATCAACG 14670 0.0 31.878899 3 TCAACGC 14830 0.0 31.5939 4 CAACGCA 15060 0.0 31.053347 5 AACGCAG 15705 0.0 29.83298 6 CTTATAC 7400 0.0 29.354475 1 TATCAAC 16165 0.0 29.065807 2 ACGCAGA 17430 0.0 26.805264 7 CGCAGAG 17905 0.0 26.069736 8 TATACAC 10535 0.0 23.440321 3 TTATACA 10615 0.0 21.534328 2 GCAGAGT 21770 0.0 21.521677 9 GTACATG 16205 0.0 19.850819 1 AGAGTAC 19655 0.0 19.657078 10-11 TACATGG 16095 0.0 19.443375 2 GAGTACT 12615 0.0 19.436378 12-13 ACACATC 11465 0.0 18.717472 6 ACATGGG 16215 0.0 18.544756 3 CAGAGTA 21245 0.0 18.473932 10-11 >>END_MODULE