##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138973_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7933794 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.327500562782447 32.0 28.0 33.0 18.0 34.0 2 31.491564565452546 33.0 31.0 33.0 27.0 34.0 3 32.325304765916535 33.0 33.0 34.0 30.0 34.0 4 32.604059923915344 33.0 33.0 34.0 31.0 34.0 5 32.95452226261484 33.0 33.0 34.0 32.0 34.0 6 36.544960582540966 38.0 37.0 38.0 34.0 38.0 7 36.66727847987987 38.0 37.0 38.0 34.0 38.0 8 36.72051669100559 38.0 38.0 38.0 34.0 38.0 9 36.94277958313513 38.0 38.0 38.0 35.0 38.0 10-11 37.072229062161185 38.0 38.0 38.0 36.0 38.0 12-13 37.132038908496995 38.0 38.0 38.0 36.0 38.0 14-15 37.135119969084144 38.0 38.0 38.0 36.0 38.0 16-17 37.100322304814064 38.0 38.0 38.0 36.0 38.0 18-19 37.13759312379424 38.0 38.0 38.0 36.0 38.0 20-21 37.10675436084164 38.0 38.0 38.0 36.0 38.0 22-23 37.14900323562289 38.0 38.0 38.0 36.0 38.0 24-25 37.15453826416072 38.0 38.0 38.0 36.0 38.0 26-27 37.08784250070066 38.0 38.0 38.0 36.0 38.0 28-29 37.076355291284294 38.0 38.0 38.0 36.0 38.0 30-31 36.94722391617681 38.0 38.0 38.0 36.0 38.0 32-33 37.04163364570523 38.0 38.0 38.0 36.0 38.0 34-35 37.05474244170853 38.0 38.0 38.0 36.0 38.0 36-37 36.98150746775951 38.0 38.0 38.0 36.0 38.0 38-39 37.00749425967346 38.0 38.0 38.0 36.0 38.0 40-41 36.93597221972807 38.0 38.0 38.0 36.0 38.0 42-43 36.92038928412706 38.0 38.0 38.0 36.0 38.0 44-45 36.91642236660232 38.0 38.0 38.0 36.0 38.0 46-47 36.874687685192924 38.0 38.0 38.0 35.0 38.0 48-49 36.84119557985188 38.0 38.0 38.0 35.0 38.0 50-51 36.859623523518565 38.0 38.0 38.0 35.0 38.0 52-53 36.77494521870003 38.0 38.0 38.0 35.0 38.0 54-55 36.760735391896354 38.0 38.0 38.0 35.0 38.0 56-57 36.765842022183705 38.0 38.0 38.0 35.0 38.0 58-59 36.78680442281299 38.0 38.0 38.0 35.0 38.0 60-61 36.78266688666599 38.0 38.0 38.0 35.0 38.0 62-63 36.78779167647701 38.0 38.0 38.0 35.0 38.0 64-65 36.74391221562776 38.0 38.0 38.0 35.0 38.0 66-67 36.74954417567772 38.0 38.0 38.0 35.0 38.0 68-69 36.76268238259422 38.0 38.0 38.0 35.0 38.0 70-71 36.67882389944138 38.0 38.0 38.0 34.5 38.0 72-73 36.636279436089936 38.0 38.0 38.0 34.0 38.0 74-75 36.687020919465134 38.0 38.0 38.0 34.5 38.0 76-77 36.66654704790052 38.0 38.0 38.0 34.0 38.0 78-79 36.68431741328465 38.0 38.0 38.0 34.0 38.0 80-81 36.70974819508342 38.0 38.0 38.0 34.5 38.0 82-83 36.58476232204778 38.0 38.0 38.0 34.0 38.0 84-85 36.603219573708714 38.0 38.0 38.0 34.0 38.0 86-87 36.60164384494084 38.0 38.0 38.0 34.0 38.0 88-89 36.54816853500512 38.0 38.0 38.0 34.0 38.0 90-91 36.54825666453159 38.0 38.0 38.0 34.0 38.0 92-93 36.59704012603319 38.0 38.0 38.0 34.0 38.0 94-95 36.50000807836206 38.0 38.0 38.0 34.0 38.0 96-97 36.46317510381352 38.0 38.0 38.0 34.0 38.0 98-99 36.52961075526525 38.0 38.0 38.0 34.0 38.0 100 34.949270354232155 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 5.0 19 14.0 20 55.0 21 232.0 22 907.0 23 2542.0 24 6000.0 25 12085.0 26 20707.0 27 33186.0 28 48961.0 29 67959.0 30 91985.0 31 119602.0 32 156324.0 33 207518.0 34 297187.0 35 499530.0 36 1261400.0 37 5107594.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.68787114966686 19.772860248199034 15.26978139336615 26.269487208767963 2 13.024890739537728 20.91805005272383 43.76287057617074 22.294188631567696 3 16.092275650212244 27.646243398807684 31.695869592782472 24.565611358197604 4 11.401228718567687 19.808744719109168 40.24113809861965 28.54888846370349 5 12.851382994559884 37.74930601011688 36.62539722514969 12.773913770173543 6 27.81665717772067 39.69526303496953 19.939290072226488 12.548789715083315 7 24.686184188800468 33.52117536704382 24.925766915551375 16.866873528604348 8 23.198169753336174 37.3753087110656 22.38108274553133 17.045438790066896 9 24.84913271002499 17.0615597027097 22.459594993265515 35.6297125939998 10-11 22.922797088001023 27.489836514535167 30.264127099846554 19.323239297617256 12-13 23.95208395882222 25.084707266157906 30.228148096610525 20.735060678409344 14-15 21.279050098855603 26.470563768103883 27.702187629272956 24.548198503767555 16-17 20.82151994367386 29.50249275441233 28.44460670393005 21.231380597983765 18-19 20.8200263329247 28.780826676366942 30.00215911832347 20.39698787238489 20-21 21.63889281553234 27.86962412138158 29.78332974000817 20.708153323077912 22-23 21.38343323776709 27.892717070769653 29.585714348738847 21.13813534272441 24-25 21.22609748446522 28.022448969172846 29.692520117578315 21.058933428783618 26-27 21.21477629200399 28.197151783876162 29.565247592941823 21.022824331178022 28-29 21.08256667530622 28.114872073960306 29.732074400373186 21.070486850360286 30-31 21.446554818103362 28.06148270850078 29.561691479112184 20.930270994283678 32-33 21.30632815264634 27.9705624018962 29.55423161367485 21.16887783178261 34-35 21.231683089896535 28.183453054222245 29.64179639091924 20.943067464961974 36-37 21.322492473433915 28.101495139524836 29.485332948035392 21.09067943900586 38-39 21.13711768047458 28.1172271537341 29.657938568816604 21.087716596974715 40-41 21.374720220147424 27.97679558958091 29.529094866045302 21.11938932422636 42-43 21.366546231678534 28.036731921740177 29.38628917376629 21.210432672815 44-45 21.324904602069438 28.18928489720296 29.303273511799716 21.18253698892789 46-47 21.446229258321075 28.070007151669568 29.019981948163693 21.463781641845664 48-49 21.38921882730034 28.177882921691072 29.024245313067226 21.408652937941365 50-51 21.312548081995136 28.27204850471498 28.976684751621306 21.438718661668577 52-53 21.44008867284655 28.275285053451537 28.966472036938896 21.318154236763018 54-55 21.405327982930505 28.194887130865133 28.914428656599828 21.485356229604534 56-57 21.51920912467606 28.28367796812841 28.78137331286419 21.415739594331342 58-59 21.342650438985245 28.496328368667857 28.939520384828874 21.221500807518023 60-61 21.54806885833146 28.55420039503133 28.72261270825623 21.175118038380976 62-63 21.384642880389094 28.699036730693177 28.707036170595646 21.20928421832208 64-65 21.390421894197942 28.617894059160022 28.663273831126666 21.328410215515365 66-67 21.427095838644153 28.62361331956856 28.601775777837556 21.34751506394973 68-69 21.41035249264163 28.501958385719934 28.69323622803033 21.39445289360811 70-71 21.47149040438954 28.271076886319857 28.745898706418892 21.511534002871706 72-73 21.492206572582777 28.178278643445203 28.801141998022388 21.528372785949625 74-75 21.445620840305757 28.285167729057086 28.712579338580372 21.55663209205678 76-77 21.542636030424013 28.23703685712867 28.63330833008595 21.58701878236137 78-79 21.478630608065647 28.265224415911256 28.6094038544803 21.6467411215428 80-81 21.506556123551395 28.272711397980206 28.639043234873647 21.58168924359476 82-83 21.536585669556576 28.25535035418015 28.69596688527516 21.512097090988114 84-85 21.65993010153571 28.252943423613868 28.571378396281013 21.515748078569413 86-87 21.50545680673566 28.28700789869987 28.607956634919944 21.59957865964453 88-89 21.600452629800735 28.262654529027348 28.546057530269465 21.590835310902452 90-91 21.624124044821468 28.31388991429529 28.55289507459387 21.509090966289367 92-93 21.644574705020155 28.27952830485312 28.544865731254333 21.531031258872396 94-95 21.5717589125481 28.351978825989004 28.522117072602253 21.554145188860648 96-97 21.61024510625759 28.47194703123968 28.57974780651618 21.338060055986546 98-99 22.636623736211288 30.35225079744578 28.88492146573555 18.12620400060738 100 21.459746740140037 31.34850344311588 22.87404167721886 24.31770813952522 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 941.0 1 983.5 2 1740.0 3 2653.0 4 3378.0 5 4814.0 6 5996.5 7 7059.5 8 8377.5 9 9171.0 10 9241.0 11 9282.0 12 10187.5 13 12296.0 14 16414.0 15 21242.0 16 25076.5 17 27556.0 18 28018.0 19 26875.0 20 25756.5 21 25618.0 22 28128.0 23 34486.5 24 44508.0 25 58591.0 26 75753.5 27 94866.0 28 115407.5 29 137865.0 30 159736.0 31 180317.5 32 201646.5 33 221570.0 34 240100.5 35 258032.0 36 275405.5 37 290639.0 38 302214.0 39 310070.5 40 318361.5 41 326379.0 42 329782.0 43 335379.5 44 341788.5 45 340425.5 46 331536.5 47 321160.5 48 311686.5 49 299065.0 50 285108.5 51 270193.5 52 252659.5 53 232856.5 54 212102.0 55 191632.5 56 171898.0 57 153153.5 58 133666.5 59 112481.5 60 90912.5 61 71523.0 62 54668.0 63 40585.5 64 29303.5 65 20918.0 66 14784.0 67 10495.5 68 7507.0 69 5304.5 70 3746.0 71 2552.5 72 1705.5 73 1117.5 74 664.0 75 372.5 76 234.5 77 139.0 78 91.0 79 61.0 80 41.5 81 31.5 82 23.5 83 22.5 84 23.0 85 19.5 86 15.0 87 10.0 88 5.0 89 4.0 90 3.0 91 1.5 92 1.0 93 1.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.00404598354835026 6 1.2604310119471213E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.8908531491591944E-5 26-27 0.0 28-29 3.1523541591719446E-5 30-31 0.0 32-33 5.052621473704421E-5 34-35 0.0 36-37 5.200987730996796E-4 38-39 5.094205551321351E-5 40-41 1.854855272358953E-4 42-43 7.068027386164439E-5 44-45 7.107023438381816E-4 46-47 0.0 48-49 7.20023789586008E-5 50-51 1.975633719088988E-5 52-53 1.788183090079723E-4 54-55 0.002271245301819194 56-57 0.0011662556397508718 58-59 2.226514221960798E-4 60-61 5.025991507568566E-4 62-63 1.5041659242696215E-4 64-65 8.19197303670589E-4 66-67 0.0013388148436413406 68-69 3.9871250834585723E-4 70-71 7.90281513092742E-4 72-73 2.349374482603665E-4 74-75 2.0800669408577434E-4 76-77 0.0 78-79 0.0017417831924480944 80-81 0.0 82-83 9.783476834209202E-4 84-85 1.6440340470483687E-4 86-87 2.2607325451666104E-5 88-89 1.1403922447549369E-4 90-91 0.0 92-93 0.0 94-95 0.0 96-97 3.0958889690380146E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 59.0 20-21 217.0 22-23 459.0 24-25 627.0 26-27 1266.0 28-29 2972.0 30-31 8867.0 32-33 11923.0 34-35 17696.0 36-37 28868.0 38-39 34882.0 40-41 35025.0 42-43 40338.0 44-45 49226.0 46-47 50816.0 48-49 47106.0 50-51 43521.0 52-53 41894.0 54-55 45910.0 56-57 49253.0 58-59 48744.0 60-61 49156.0 62-63 48965.0 64-65 53823.0 66-67 58669.0 68-69 60453.0 70-71 66607.0 72-73 52528.0 74-75 52896.0 76-77 56029.0 78-79 57190.0 80-81 57779.0 82-83 55339.0 84-85 55474.0 86-87 57697.0 88-89 59925.0 90-91 60407.0 92-93 61442.0 94-95 74630.0 96-97 245276.0 98-99 553866.0 100-101 5535974.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.27766701654066 #Duplication Level Percentage of deduplicated Percentage of total 1 89.7585978301137 76.54403817628025 2 7.110012672097119 12.126505862689651 3 1.7778754632488156 4.548392152554315 4 0.6297055778885501 2.147992903585523 5 0.29120369808858787 1.2416585999791916 6 0.15535878517231172 0.7949180850011204 7 0.08065019454152296 0.4814362304451854 8 0.05535620171957719 0.3776518190034047 9 0.03653020182652376 0.2803689348668386 >10 0.10314766710326943 1.3108734348111302 >50 0.0011982444666296158 0.06887524085033064 >100 2.941991623161458E-4 0.04052910894043677 >500 6.926457108751172E-5 0.03675945099260379 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2604310119471213E-5 0.0 2 0.0 2.5208620238942427E-5 0.0 1.2604310119471213E-5 0.0 3 0.0 2.5208620238942427E-5 0.0 1.2604310119471213E-5 0.0 4 0.0 8.823017083629849E-5 0.0 3.7812930358413644E-5 0.0 5 0.0 8.823017083629849E-5 0.0 3.7812930358413644E-5 0.0 6 1.2604310119471213E-5 8.823017083629849E-5 0.0 3.7812930358413644E-5 0.0 7 1.2604310119471213E-5 8.823017083629849E-5 0.0 5.0417240477884854E-5 0.0 8 1.2604310119471213E-5 8.823017083629849E-5 0.0 7.562586071682729E-5 0.0 9 1.2604310119471213E-5 1.2604310119471214E-4 0.0 1.2604310119471214E-4 0.0 10-11 1.2604310119471213E-5 1.2604310119471214E-4 0.0 1.3864741131418336E-4 0.0 12-13 1.2604310119471213E-5 1.2604310119471214E-4 0.0 2.0166896191153942E-4 0.0 14-15 2.5208620238942427E-5 2.3317973721021746E-4 0.0 2.0166896191153942E-4 0.0 16-17 5.0417240477884854E-5 2.3948189226995307E-4 0.0 2.0166896191153942E-4 0.0 18-19 5.0417240477884854E-5 2.520862023894243E-4 0.0 2.772948226283667E-4 0.0 20-21 5.0417240477884854E-5 2.646905125088955E-4 0.0 3.277120631062516E-4 0.0 22-23 5.0417240477884854E-5 3.1510775298678037E-4 0.0 3.781293035841364E-4 0.0 24-25 5.0417240477884854E-5 3.5292068334519396E-4 0.0 3.9703576876334325E-4 0.0 26-27 5.0417240477884854E-5 3.655249934646652E-4 0.0 4.3484869912175685E-4 0.0 28-29 5.0417240477884854E-5 3.718271485244008E-4 0.0 6.239133509138252E-4 0.0 30-31 5.0417240477884854E-5 4.2854654406202126E-4 0.0 0.0010650642050953176 0.0 32-33 5.0417240477884854E-5 4.411508541814925E-4 0.0 0.001909552983099889 0.0 34-35 5.0417240477884854E-5 5.29381025017791E-4 0.0 0.003100660289389919 0.0 36-37 5.0417240477884854E-5 5.92402575615147E-4 0.0 0.005199277924281875 0.0 38-39 5.0417240477884854E-5 6.365176610332963E-4 0.0 0.008552024416061219 0.0 40-41 5.0417240477884854E-5 7.310499869293304E-4 0.0 0.012169461420349456 0.0 42-43 5.0417240477884854E-5 7.310499869293304E-4 0.0 0.015641948858263775 0.0 44-45 5.0417240477884854E-5 7.940715375266865E-4 0.0 0.01972574533697245 0.0 46-47 5.0417240477884854E-5 8.444887780045714E-4 0.0 0.024118347413608167 0.0 48-49 5.0417240477884854E-5 8.444887780045714E-4 0.0 0.02880715077805146 0.0 50-51 5.0417240477884854E-5 9.327189488408698E-4 0.0 0.033666112329107614 0.0 52-53 5.0417240477884854E-5 9.45323258960341E-4 0.0 0.0389032031837479 0.0 54-55 6.302155059735607E-5 9.516254140200767E-4 0.0 0.04369284102914696 0.0 56-57 7.562586071682729E-5 9.579275690798123E-4 0.0 0.04879758662753281 0.0 58-59 7.562586071682729E-5 9.642297241395478E-4 0.0 0.05410400118783018 0.0 60-61 8.192801577656288E-5 9.894383443784902E-4 0.0 0.05910791230526026 0.0 62-63 8.823017083629849E-5 0.0010146469646174327 0.0 0.06378411135958408 0.0 64-65 8.823017083629849E-5 0.0010965749803939957 0.0 0.06886995049279071 0.0 66-67 9.45323258960341E-5 0.0010965749803939957 0.0 0.07403141548671417 0.0 68-69 1.0083448095576971E-4 0.0011469922208718806 0.0 0.07894709643330794 0.0 70-71 1.0713663601550532E-4 0.0011658986860510873 0.0 0.08337751144030209 0.0 72-73 1.1974094613497653E-4 0.001172200841110823 0.0 0.08673656008714116 0.0 74-75 1.2604310119471214E-4 0.001216315926528972 0.0 0.08968596865509743 0.0 76-77 1.2604310119471214E-4 0.0012415245467679145 0.0 0.09214380912839432 0.0 78-79 1.2604310119471214E-4 0.00124782670182765 0.0 0.09371304573826847 0.0 80-81 1.2604310119471214E-4 0.00124782670182765 0.0 0.09422352029810707 0.0 82-83 1.2604310119471214E-4 0.0012604310119471215 0.0 0.09459534744663146 0.0 84-85 1.3864741131418336E-4 0.0012604310119471215 0.0 0.09482852718384169 0.0 86-87 1.4494956637391897E-4 0.001329754717604213 0.0 0.09502389399069348 0.0 88 1.5125172143365458E-4 0.0014368913536197184 0.0 0.09504910261093243 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8710 0.0 49.768127 1 GTATCAA 16260 0.0 37.215862 1 ATCAACG 18895 0.0 31.56479 3 TCAACGC 19050 0.0 31.42231 4 CAACGCA 19450 0.0 30.731298 5 AACGCAG 20065 0.0 29.788055 6 TATCAAC 20655 0.0 29.31811 2 CTTATAC 5725 0.0 27.014643 1 ACGCAGA 22570 0.0 26.443335 7 CGCAGAG 22760 0.0 26.241728 8 GCAGAGT 27220 0.0 21.910007 9 GTACATG 19570 0.0 20.369326 1 TACATGG 19265 0.0 20.329985 2 TATACAC 9220 0.0 20.08188 3 GAGTACT 16735 0.0 20.031345 12-13 AGAGTAC 24845 0.0 19.96279 10-11 ACATGGG 19460 0.0 19.58897 3 CAGAGTA 27115 0.0 18.926176 10-11 TATGCCG 4545 0.0 18.264065 42-43 TTATACA 9895 0.0 17.69932 2 >>END_MODULE