##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138972_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6027683 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.433014974410565 32.0 28.0 33.0 18.0 34.0 2 31.554219589849033 33.0 31.0 33.0 27.0 34.0 3 32.34898600341126 33.0 33.0 34.0 30.0 34.0 4 32.61915366153131 33.0 33.0 34.0 31.0 34.0 5 32.965988091941796 33.0 33.0 34.0 32.0 34.0 6 36.52905320336189 38.0 37.0 38.0 34.0 38.0 7 36.65061964937439 38.0 37.0 38.0 34.0 38.0 8 36.702171796360226 38.0 38.0 38.0 34.0 38.0 9 36.93915522763888 38.0 38.0 38.0 35.0 38.0 10-11 37.07049308996508 38.0 38.0 38.0 36.0 38.0 12-13 37.13106512071056 38.0 38.0 38.0 36.0 38.0 14-15 37.13258792806457 38.0 38.0 38.0 36.0 38.0 16-17 37.09328808432693 38.0 38.0 38.0 36.0 38.0 18-19 37.13492995567285 38.0 38.0 38.0 36.0 38.0 20-21 37.1048289443387 38.0 38.0 38.0 36.0 38.0 22-23 37.14660532370566 38.0 38.0 38.0 36.0 38.0 24-25 37.1535933276257 38.0 38.0 38.0 36.0 38.0 26-27 37.08793531766905 38.0 38.0 38.0 36.0 38.0 28-29 37.07925614143297 38.0 38.0 38.0 36.0 38.0 30-31 36.94729726886822 38.0 38.0 38.0 36.0 38.0 32-33 37.04440020947522 38.0 38.0 38.0 36.0 38.0 34-35 37.06031852450961 38.0 38.0 38.0 36.0 38.0 36-37 36.98660023132064 38.0 38.0 38.0 36.0 38.0 38-39 37.021129718891615 38.0 38.0 38.0 36.0 38.0 40-41 36.938820493628874 38.0 38.0 38.0 36.0 38.0 42-43 36.919934582923275 38.0 38.0 38.0 36.0 38.0 44-45 36.91801520377327 38.0 38.0 38.0 36.0 38.0 46-47 36.87692207780178 38.0 38.0 38.0 35.0 38.0 48-49 36.843192243274984 38.0 38.0 38.0 35.0 38.0 50-51 36.858789721174176 38.0 38.0 38.0 35.0 38.0 52-53 36.77019921890688 38.0 38.0 38.0 35.0 38.0 54-55 36.75840026027273 38.0 38.0 38.0 35.0 38.0 56-57 36.761595103934624 38.0 38.0 38.0 35.0 38.0 58-59 36.78026845320046 38.0 38.0 38.0 35.0 38.0 60-61 36.77646265535806 38.0 38.0 38.0 35.0 38.0 62-63 36.779921632950504 38.0 38.0 38.0 35.0 38.0 64-65 36.737721234563736 38.0 38.0 38.0 35.0 38.0 66-67 36.740419924208425 38.0 38.0 38.0 35.0 38.0 68-69 36.75151779494006 38.0 38.0 38.0 35.0 38.0 70-71 36.66724542537872 38.0 38.0 38.0 34.0 38.0 72-73 36.625266288629064 38.0 38.0 38.0 34.0 38.0 74-75 36.67143715393969 38.0 38.0 38.0 34.0 38.0 76-77 36.64910781579312 38.0 38.0 38.0 34.0 38.0 78-79 36.666510243214205 38.0 38.0 38.0 34.0 38.0 80-81 36.688907123912145 38.0 38.0 38.0 34.0 38.0 82-83 36.56023364985389 38.0 38.0 38.0 34.0 38.0 84-85 36.57695728207131 38.0 38.0 38.0 34.0 38.0 86-87 36.57150101083822 38.0 38.0 38.0 34.0 38.0 88-89 36.52033577185473 38.0 38.0 38.0 34.0 38.0 90-91 36.5173570262035 38.0 38.0 38.0 34.0 38.0 92-93 36.56454260479263 38.0 38.0 38.0 34.0 38.0 94-95 36.46806932688968 38.0 38.0 38.0 34.0 38.0 96-97 36.427756708288456 38.0 38.0 38.0 34.0 38.0 98-99 36.49415551441366 38.0 38.0 38.0 34.0 38.0 100 34.88974020070599 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 11.0 20 39.0 21 208.0 22 605.0 23 1955.0 24 4398.0 25 8941.0 26 15725.0 27 24660.0 28 36791.0 29 51774.0 30 69904.0 31 91762.0 32 119872.0 33 160180.0 34 228924.0 35 383483.0 36 959229.0 37 3869220.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.035546494399256 19.566589682967734 15.211831810000625 26.18603201263238 2 13.094749674128517 20.97748006987096 43.564782686813494 22.36298756918703 3 16.306663771137266 27.400545118248587 31.55131084365253 24.741480266961617 4 11.444447227898348 19.708767033701008 40.25719335273604 28.58959238566461 5 12.949585621953632 37.63745201757223 36.556135437987464 12.856826922486677 6 28.01179159554343 39.60958132668888 19.88362692596807 12.495000151799623 7 24.89621634050762 33.463720636934625 24.7530767626632 16.886986259894556 8 23.31114625636418 37.29680210455659 22.325527072342723 17.066524566736504 9 24.992886984932685 17.044791506122667 22.2810987240039 35.68122278494074 10-11 22.936474927430655 27.44489051597438 30.25833475317133 19.360299803423636 12-13 24.00705212931735 25.087757601055 30.13849600252701 20.76669426710064 14-15 21.35766761457097 26.495636880705238 27.654846812614398 24.49184869210939 16-17 20.915441306385887 29.406199695637607 28.40734159377658 21.27101740419992 18-19 20.88866484849983 28.719152948156037 29.928282558986595 20.463899644357543 20-21 21.721210403866397 27.942110527953425 29.67953627502841 20.657142793151763 22-23 21.447117594065794 27.88424751511009 29.469151860743303 21.199483030080817 24-25 21.295057981213628 27.944437121017856 29.572007612639716 21.188497285128797 26-27 21.265010995943694 28.15091012829002 29.46305596054652 21.12102291521977 28-29 21.154673593674808 28.129541004940084 29.549195397510612 21.166590003874493 30-31 21.454955196936947 27.997204567179935 29.502377587516897 21.045462648366218 32-33 21.225241835531058 28.078690792169823 29.457342431796853 21.238724940502266 34-35 21.29874805370796 28.079758154818986 29.441989819209752 21.1795039722633 36-37 21.29976211343433 28.06321939818872 29.471524560744545 21.165493927632404 38-39 21.1773229666493 28.15942593284781 29.547429104421024 21.11582199608187 40-41 21.41481476869037 28.036200258597315 29.407711841202467 21.14127313150985 42-43 21.37243880294201 28.072694856092756 29.261068148237168 21.293798192728065 44-45 21.413406240168253 28.172898902259806 29.134112954333453 21.279581903238487 46-47 21.467992934763185 28.14032043232765 28.92986697360899 21.461819659300176 48-49 21.441713243809197 28.211280268474326 28.951653128255376 21.395353359461105 50-51 21.39538965628323 28.278059765073994 28.908190733233706 21.418359845409068 52-53 21.53914330436859 28.25143191928095 28.854041617952603 21.35538315839785 54-55 21.509003953283813 28.193906851346362 28.811355296449026 21.4857338989208 56-57 21.56020560330284 28.28474486608102 28.722747242761653 21.432302287854483 58-59 21.45697708196235 28.347125439785675 28.8579334756764 21.337964002575575 60-61 21.58439116000201 28.401164369688182 28.756670477794895 21.25777399251492 62-63 21.48699014887314 28.45119965103019 28.71517987248421 21.34663032761246 64-65 21.479361967074258 28.417948352881744 28.664188575364307 21.438501104679695 66-67 21.539306734477197 28.421173212837893 28.612463551884183 21.427056500800727 68-69 21.505981682378483 28.38156751169733 28.668862839907078 21.44358796601711 70-71 21.542697692850613 28.173472925099226 28.70260264653582 21.581226735514342 72-73 21.55381651728243 28.14409260021723 28.740319212160394 21.561771670339947 74-75 21.520524956990926 28.22107343702426 28.64784729445135 21.61055431153347 76-77 21.582178965137526 28.2038255242682 28.553766230230277 21.660229280363993 78-79 21.583927893635067 28.239502729709105 28.544659897276524 21.631909479379306 80-81 21.561264465172904 28.252358084509815 28.561683739977372 21.62469371033991 82-83 21.62510105096882 28.242275909003467 28.546489451082806 21.586133588944904 84-85 21.73522718064027 28.205694234394844 28.517489741063766 21.54158884390112 86-87 21.558830972743387 28.222739524602197 28.549894070476427 21.668535432177986 88-89 21.664713507022242 28.24174530268746 28.467030453405723 21.626510736884576 90-91 21.71115736585679 28.25449548047952 28.49384375601 21.540503397653694 92-93 21.66312947964236 28.259499818373413 28.503811328283636 21.57355937370059 94-95 21.59885283369446 28.310259421675767 28.466513073028278 21.6243746716015 96-97 21.634358160374763 28.43631772182085 28.56696274499307 21.362361372811318 98-99 22.676459033031367 30.306323397798057 28.854543736762178 18.162673832408395 100 21.552293237089017 31.272062145107732 22.886089307657702 24.289555310145545 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 668.0 1 695.5 2 1202.5 3 1865.0 4 2482.0 5 3550.0 6 4387.0 7 5142.5 8 5967.5 9 6392.5 10 6497.0 11 6626.0 12 7363.5 13 8945.0 14 11943.5 15 15529.5 16 18422.5 17 20226.5 18 20541.5 19 19856.0 20 19122.0 21 19090.0 22 20999.5 23 25629.5 24 32480.5 25 41987.0 26 55007.5 27 69287.0 28 84131.0 29 100012.5 30 115669.0 31 131477.5 32 148049.0 33 163756.5 34 178227.0 35 192010.5 36 206023.5 37 218582.0 38 227413.5 39 234158.5 40 241538.0 41 248534.0 42 252443.0 43 254603.0 44 257047.5 45 260120.0 46 257346.5 47 251302.5 48 244987.0 49 235065.5 50 224196.5 51 211013.5 52 195546.5 53 179668.5 54 163802.0 55 146968.5 56 130309.5 57 113803.0 58 97584.5 59 82305.5 60 66857.5 61 52584.0 62 39843.0 63 29643.5 64 21765.5 65 15685.5 66 11208.0 67 8196.0 68 6058.0 69 4251.5 70 3040.0 71 2243.0 72 1581.5 73 1007.0 74 625.0 75 382.5 76 240.5 77 139.5 78 85.5 79 59.5 80 42.0 81 24.0 82 14.0 83 8.5 84 4.0 85 2.5 86 4.0 87 6.0 88 6.5 89 5.0 90 4.0 91 3.5 92 2.5 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0035834664828923485 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.6591775539823785E-5 26-27 0.0 28-29 3.319333215662971E-5 30-31 0.0 32-33 3.325055607398714E-5 34-35 0.0 36-37 5.675857772352696E-4 38-39 4.189437656810652E-5 40-41 2.1036441933235548E-4 42-43 5.9160015672333293E-5 44-45 6.711987592848453E-4 46-47 0.0 48-49 3.441712575527307E-5 50-51 8.654931099391756E-6 52-53 1.4794780297077448E-4 54-55 0.0023103243406583742 56-57 0.0012767275201962887 58-59 1.5064924062591745E-4 60-61 5.083856881401646E-4 62-63 4.487778432993429E-5 64-65 7.227161987440638E-4 66-67 0.0013465843297071698 68-69 4.309319664782607E-4 70-71 8.317546168619394E-4 72-73 1.7698786953087689E-4 74-75 2.1580726272132206E-4 76-77 0.0 78-79 0.0015247143328579085 80-81 0.0 82-83 8.814337032545922E-4 84-85 1.7574163948203862E-4 86-87 0.0 88-89 7.942357545875057E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 2.2780248571859622E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 28.0 20-21 155.0 22-23 331.0 24-25 462.0 26-27 979.0 28-29 2252.0 30-31 6559.0 32-33 8779.0 34-35 13017.0 36-37 21258.0 38-39 25694.0 40-41 25109.0 42-43 29517.0 44-45 36252.0 46-47 37390.0 48-49 34679.0 50-51 32186.0 52-53 31354.0 54-55 34099.0 56-57 36354.0 58-59 36208.0 60-61 35705.0 62-63 35416.0 64-65 38370.0 66-67 41660.0 68-69 42224.0 70-71 44331.0 72-73 38887.0 74-75 39362.0 76-77 41512.0 78-79 42676.0 80-81 42483.0 82-83 40930.0 84-85 41345.0 86-87 42958.0 88-89 44294.0 90-91 44728.0 92-93 45652.0 94-95 56119.0 96-97 188186.0 98-99 426755.0 100-101 4241428.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.67187845089806 #Duplication Level Percentage of deduplicated Percentage of total 1 91.48436937707277 81.12090881560857 2 6.358188128599131 11.275849698141705 3 1.3171516998730466 3.503829462976097 4 0.44033614801442106 1.5618173357708562 5 0.17670849411754952 0.7834537055816295 6 0.08977971065138211 0.4776561354141692 7 0.04833336888993159 0.3000067427931302 8 0.02426217077874785 0.1721097806598448 9 0.015945125487148923 0.12724958061727076 >10 0.04400961723372444 0.55799265894215 >50 5.279729445978421E-4 0.030378907062554292 >100 3.3768161358783066E-4 0.06413865224859697 >500 5.050472397494362E-5 0.024608524183364865 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.6590122605983094E-5 0.0 2 0.0 1.6590122605983094E-5 0.0 1.6590122605983094E-5 0.0 3 0.0 1.6590122605983094E-5 0.0 1.6590122605983094E-5 0.0 4 0.0 1.6590122605983094E-5 0.0 1.6590122605983094E-5 0.0 5 0.0 3.318024521196619E-5 0.0 1.6590122605983094E-5 0.0 6 8.295061302991547E-5 3.318024521196619E-5 0.0 1.6590122605983094E-5 3.318024521196619E-5 7 8.295061302991547E-5 3.318024521196619E-5 0.0 1.6590122605983094E-5 3.318024521196619E-5 8 8.295061302991547E-5 3.318024521196619E-5 0.0 4.977036781794928E-5 3.318024521196619E-5 9 1.3272098084786475E-4 9.954073563589856E-5 0.0 1.1613085824188167E-4 4.977036781794928E-5 10-11 1.3272098084786475E-4 1.0783579693889012E-4 0.0 1.2442591954487322E-4 5.806542912094083E-5 12-13 1.3272098084786475E-4 1.1613085824188167E-4 0.0 1.410160421508563E-4 6.636049042393238E-5 14-15 1.3272098084786475E-4 1.6590122605983094E-4 0.0 1.4931110345384785E-4 1.0783579693889012E-4 16-17 1.6590122605983094E-4 1.9078640996880557E-4 0.0 1.6590122605983094E-4 1.1613085824188167E-4 18-19 1.6590122605983094E-4 2.073765325747887E-4 0.0 2.073765325747887E-4 1.1613085824188167E-4 20-21 1.6590122605983094E-4 2.1567159387778025E-4 0.0 2.4055677778675488E-4 1.1613085824188167E-4 22-23 1.6590122605983094E-4 2.3226171648376334E-4 0.0 2.820320843017126E-4 1.3272098084786475E-4 24-25 1.741962873628225E-4 2.7373702299872106E-4 0.0 3.152123295136788E-4 1.3272098084786475E-4 26-27 1.8249134866581403E-4 2.986222069076957E-4 0.0 3.152123295136788E-4 1.3272098084786475E-4 28-29 1.8249134866581403E-4 2.986222069076957E-4 0.0 4.2304812645256894E-4 1.3272098084786475E-4 30-31 1.9078640996880557E-4 2.986222069076957E-4 0.0 8.129160076931716E-4 1.3272098084786475E-4 32-33 1.9908147127179713E-4 3.318024521196619E-4 0.0 0.0016756023832042925 1.6590122605983094E-4 34-35 2.1567159387778025E-4 3.815728199376112E-4 0.0 0.002953041823864991 1.6590122605983094E-4 36-37 2.1567159387778025E-4 4.147530651495774E-4 0.0 0.0049853318430979204 1.741962873628225E-4 38-39 2.1567159387778025E-4 4.479333103615436E-4 0.0 0.008104274893022742 1.8249134866581403E-4 40-41 2.3226171648376334E-4 4.977036781794929E-4 0.0 0.01184534754067193 1.8249134866581403E-4 42-43 2.3226171648376334E-4 5.059987394824845E-4 0.0 0.01538733871704932 1.8249134866581403E-4 44-45 2.4055677778675488E-4 5.391789846944506E-4 0.0 0.019443623694212188 1.8249134866581403E-4 46-47 2.4885183908974644E-4 5.640641686034252E-4 0.0 0.02407226790128147 1.8249134866581403E-4 48-49 2.4885183908974644E-4 5.806542912094083E-4 0.0 0.028908288640925546 1.8249134866581403E-4 50-51 2.986222069076957E-4 6.304246590273576E-4 0.0 0.0336613587675397 1.8249134866581403E-4 52-53 2.986222069076957E-4 6.470147816333407E-4 0.0 0.03875452640757651 1.8249134866581403E-4 54-55 3.0691726821068725E-4 6.636049042393238E-4 0.0 0.04378962861849238 1.8249134866581403E-4 56-57 3.152123295136788E-4 6.9678514945129E-4 0.0 0.0484846333159856 1.8249134866581403E-4 58-59 3.152123295136788E-4 6.9678514945129E-4 0.0 0.05359439107862839 1.9078640996880557E-4 60-61 3.152123295136788E-4 7.382604559662477E-4 0.0 0.058364051327848526 1.9908147127179713E-4 62-63 3.4009751342265344E-4 7.631456398752224E-4 0.0 0.06314200663837166 1.9908147127179713E-4 64-65 3.48392574725645E-4 7.963258850871885E-4 0.0 0.06753009406765419 1.9908147127179713E-4 66-67 3.48392574725645E-4 8.295061302991547E-4 0.0 0.07239099999120724 1.9908147127179713E-4 68-69 3.48392574725645E-4 8.295061302991547E-4 0.0 0.07730167628257822 1.9908147127179713E-4 70-71 3.649826973316281E-4 8.460962529051379E-4 0.0 0.08159022297622487 2.073765325747887E-4 72-73 3.8986788124060275E-4 8.62686375511121E-4 0.0 0.08533129562387405 2.3226171648376334E-4 74-75 3.9816294254359425E-4 8.709814368141125E-4 0.0 0.08791935475040741 2.3226171648376334E-4 76-77 4.064580038465858E-4 9.207518046320618E-4 0.0 0.09039128301869889 2.3226171648376334E-4 78-79 4.147530651495774E-4 9.290468659350534E-4 0.0 0.09203370515669121 2.3226171648376334E-4 80-81 4.147530651495774E-4 9.290468659350534E-4 0.0 0.09259776932529465 2.4055677778675488E-4 82-83 4.147530651495774E-4 9.622271111470195E-4 0.0 0.09317842361650405 2.57146900392738E-4 84-85 4.313431877555605E-4 0.0010119974789649688 0.0 0.09346045570080577 2.654419616957295E-4 86-87 4.313431877555605E-4 0.0010119974789649688 0.0 0.0935351112525327 2.654419616957295E-4 88 4.313431877555605E-4 0.001061767846782918 0.0 0.0935351112525327 2.654419616957295E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6300 0.0 48.121548 1 GTATCAA 11970 0.0 38.77646 1 ATCAACG 13615 0.0 33.32023 3 TCAACGC 13650 0.0 33.234795 4 CAACGCA 14015 0.0 32.462887 5 AACGCAG 14595 0.0 31.260408 6 TATCAAC 15065 0.0 30.548754 2 ACGCAGA 16495 0.0 27.474 7 CGCAGAG 16675 0.0 27.177427 8 GCAGAGT 20640 0.0 21.956572 9 AGAGTAC 18380 0.0 20.06303 10-11 GAGTACT 12320 0.0 19.670416 12-13 GTACATG 14440 0.0 19.510372 1 TACATGG 14470 0.0 19.409456 2 ACATGGG 14370 0.0 18.874777 3 CAGAGTA 20185 0.0 18.53983 10-11 CTTATAC 3970 0.0 17.851364 1 TATGCCG 2060 0.0 17.267431 42-43 AGTACTT 13830 0.0 17.238075 12-13 CATGGGG 10000 0.0 16.88629 4 >>END_MODULE