##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138971_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6261503 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.339880376963805 32.0 28.0 33.0 18.0 34.0 2 31.528018432635104 33.0 31.0 33.0 27.0 34.0 3 32.33032771844076 33.0 33.0 34.0 30.0 34.0 4 32.59907341735682 33.0 33.0 34.0 31.0 34.0 5 32.955514993764275 33.0 33.0 34.0 32.0 34.0 6 36.49750115906676 38.0 37.0 38.0 34.0 38.0 7 36.62140591484185 38.0 37.0 38.0 34.0 38.0 8 36.672899461998185 38.0 38.0 38.0 34.0 38.0 9 36.91807749672882 38.0 38.0 38.0 35.0 38.0 10-11 37.05478077707541 38.0 38.0 38.0 36.0 38.0 12-13 37.11761233684628 38.0 38.0 38.0 36.0 38.0 14-15 37.11913409607885 38.0 38.0 38.0 36.0 38.0 16-17 37.08142733461918 38.0 38.0 38.0 36.0 38.0 18-19 37.121880720970665 38.0 38.0 38.0 36.0 38.0 20-21 37.09394197656711 38.0 38.0 38.0 36.0 38.0 22-23 37.137083700779286 38.0 38.0 38.0 36.0 38.0 24-25 37.14621052161964 38.0 38.0 38.0 36.0 38.0 26-27 37.08068107244471 38.0 38.0 38.0 36.0 38.0 28-29 37.07079160804017 38.0 38.0 38.0 36.0 38.0 30-31 36.941978095484444 38.0 38.0 38.0 36.0 38.0 32-33 37.03880515554789 38.0 38.0 38.0 36.0 38.0 34-35 37.05253409830334 38.0 38.0 38.0 36.0 38.0 36-37 36.978856192921505 38.0 38.0 38.0 36.0 38.0 38-39 37.01146748519602 38.0 38.0 38.0 36.0 38.0 40-41 36.93197597340794 38.0 38.0 38.0 35.5 38.0 42-43 36.916789249768954 38.0 38.0 38.0 35.5 38.0 44-45 36.91580880084126 38.0 38.0 38.0 36.0 38.0 46-47 36.875065117528166 38.0 38.0 38.0 35.0 38.0 48-49 36.83996109545993 38.0 38.0 38.0 35.0 38.0 50-51 36.85680371531952 38.0 38.0 38.0 35.0 38.0 52-53 36.76824211290679 38.0 38.0 38.0 35.0 38.0 54-55 36.754429456970705 38.0 38.0 38.0 35.0 38.0 56-57 36.75743484873516 38.0 38.0 38.0 35.0 38.0 58-59 36.77779065592148 38.0 38.0 38.0 35.0 38.0 60-61 36.77222892414731 38.0 38.0 38.0 35.0 38.0 62-63 36.77608119496738 38.0 38.0 38.0 35.0 38.0 64-65 36.7314252560799 38.0 38.0 38.0 35.0 38.0 66-67 36.733582065242246 38.0 38.0 38.0 35.0 38.0 68-69 36.742908954760715 38.0 38.0 38.0 35.0 38.0 70-71 36.65816801665829 38.0 38.0 38.0 34.0 38.0 72-73 36.61377640761449 38.0 38.0 38.0 34.0 38.0 74-75 36.66204244144784 38.0 38.0 38.0 34.0 38.0 76-77 36.63695732977474 38.0 38.0 38.0 34.0 38.0 78-79 36.65829316231533 38.0 38.0 38.0 34.0 38.0 80-81 36.67893196519131 38.0 38.0 38.0 34.0 38.0 82-83 36.55116400509496 38.0 38.0 38.0 34.0 38.0 84-85 36.56614029887088 38.0 38.0 38.0 34.0 38.0 86-87 36.56508517088919 38.0 38.0 38.0 34.0 38.0 88-89 36.51171289931505 38.0 38.0 38.0 34.0 38.0 90-91 36.508533696728875 38.0 38.0 38.0 34.0 38.0 92-93 36.55434125471909 38.0 38.0 38.0 34.0 38.0 94-95 36.4557999377255 38.0 38.0 38.0 34.0 38.0 96-97 36.415763412295775 38.0 38.0 38.0 34.0 38.0 98-99 36.48725465206731 38.0 38.0 38.0 34.0 38.0 100 34.896227735772705 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 17.0 20 41.0 21 162.0 22 646.0 23 1869.0 24 4651.0 25 9273.0 26 16202.0 27 25583.0 28 38653.0 29 53709.0 30 72761.0 31 95438.0 32 126025.0 33 167459.0 34 241569.0 35 402805.0 36 1005386.0 37 3999254.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.97262366559595 19.463873130780264 15.234153844532216 26.32934935909158 2 13.135264807826491 20.868152582534897 43.582826679153555 22.41375593048506 3 16.369632019660454 27.263549981529994 31.447146156441992 24.91967184236756 4 11.514615580316738 19.571147694091977 40.09808827049991 28.816148455091373 5 13.047081515870559 37.528115405765014 36.49704284146593 12.927760236898497 6 28.19671251455122 39.478205152980046 19.785728761928244 12.539353570540493 7 24.991012541238103 33.34876626266888 24.690078404498088 16.970142791594924 8 23.33329553623148 37.35202234990545 22.270244061210224 17.04443805265285 9 24.903258036170875 17.201751273097095 22.21173130664176 35.68325938409027 10-11 23.04872328576701 27.408874514633307 30.15036485648893 19.39203734311075 12-13 24.006153155240842 25.002599216194575 30.133188469286047 20.85805915927853 14-15 21.38928944057042 26.377372972591406 27.566712017865356 24.666625568972815 16-17 20.941984696006692 29.375982092478438 28.312020292891336 21.370012918623534 18-19 20.972400715930345 28.710862232278732 29.773913707299986 20.54282334449093 20-21 21.84754799595205 27.851311188106187 29.500213169830996 20.80092764611077 22-23 21.537921708902342 27.819996548604504 29.36349383440377 21.278587908089385 24-25 21.37705540162798 27.9293441290451 29.45178961235647 21.24181085697045 26-27 21.347143323346057 28.12362476616532 29.347456087960015 21.181775822528603 28-29 21.248449657051278 28.14061576594331 29.40439989845184 21.206534678553574 30-31 21.642564464602142 27.917470475245388 29.31121200972938 21.128753050423086 32-33 21.313408798976752 28.126431703187315 29.26744163531688 21.292717862519048 34-35 21.44212178557646 28.09817574212044 29.265069022681907 21.1946334496212 36-37 21.39182256673052 28.08676584416952 29.287737352009025 21.233674237090934 38-39 21.254513973973715 28.098859254291497 29.424347408334086 21.2222793634007 40-41 21.525442534903572 27.965596701331158 29.28214426100072 21.22681650276455 42-43 21.46599734772088 28.0188365614052 29.17526536402852 21.3399007268454 44-45 21.491293299818665 28.13278557970878 29.021517223963595 21.354403896508963 46-47 21.57336459286368 28.02047841015448 28.848451746222043 21.5577052507598 48-49 21.491890962704378 28.14738414952628 28.877924774051078 21.482800113718255 50-51 21.41944082578734 28.253375877438934 28.834562310172856 21.492620986600866 52-53 21.63486075974321 28.170426245206727 28.756519878183674 21.438193116866387 54-55 21.59405320340671 28.09762299445931 28.75713160444935 21.55119219768463 56-57 21.632988925824957 28.20224314802946 28.662355068925987 21.5024128572196 58-59 21.515653384677304 28.30305011204299 28.816107403539686 21.365189099740018 60-61 21.627874899597586 28.372471426197844 28.65618493831681 21.343468735887758 62-63 21.563730336448366 28.397592344411652 28.63964499632671 21.39903232281327 64-65 21.55667149875227 28.340277291991185 28.632453399694285 21.470597809562268 66-67 21.616202473382568 28.370019705640185 28.52293128916556 21.490846531811687 68-69 21.561661443762752 28.32520344910141 28.6214256217908 21.49170948534504 70-71 21.613996978688593 28.092558438674626 28.665588052535668 21.627856530101113 72-73 21.62821067467096 28.090226704071576 28.643869891576312 21.637692729681152 74-75 21.54164025309954 28.17526709180495 28.593808908393033 21.68928374670248 76-77 21.664514048480328 28.152318864735047 28.487653164801152 21.69551392198347 78-79 21.60900319667094 28.19288708803883 28.482465721949808 21.71564399334042 80-81 21.619681150699606 28.19492104672613 28.476955443693008 21.708442358881257 82-83 21.678884985407485 28.19343628521122 28.487722557872225 21.639956171509073 84-85 21.78036097522185 28.153353148784444 28.46255968015525 21.60372619583846 86-87 21.631352418477015 28.16962541613661 28.494886701812373 21.704135463574 88-89 21.739488807230465 28.160950666675642 28.42771957025213 21.671840955841756 90-91 21.733026876348973 28.177569637412603 28.493553170484525 21.5958503157539 92-93 21.709402963378512 28.20417015035035 28.422370529068836 21.664056357202302 94-95 21.644536794606676 28.252904119433886 28.43543707747722 21.66712200848222 96-97 21.727504958996043 28.38178719182782 28.508175238717325 21.382532610458814 98-99 22.758881808896486 30.27456769088851 28.756888922146306 18.209661578068694 100 21.65460980744586 31.214391528103935 22.769413523938393 24.361585140511814 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 677.0 1 711.0 2 1222.0 3 1832.5 4 2362.0 5 3376.5 6 4228.0 7 5009.0 8 5948.0 9 6482.0 10 6420.0 11 6479.5 12 7206.0 13 8714.5 14 11621.5 15 15116.5 16 17907.0 17 19537.5 18 19859.0 19 19289.5 20 18583.0 21 18654.0 22 20727.5 23 25358.5 24 32553.0 25 42581.0 26 56121.5 27 71235.0 28 86398.0 29 102310.5 30 117961.5 31 133805.0 32 150661.0 33 166971.5 34 182892.5 35 197978.5 36 212382.5 37 225502.0 38 234488.5 39 241994.0 40 250600.0 41 256824.5 42 260277.5 43 264902.5 44 268026.0 45 267358.5 46 263015.5 47 257059.0 48 250081.5 49 240079.5 50 229381.5 51 216922.5 52 202408.0 53 187065.5 54 170939.5 55 154865.5 56 138752.0 57 122779.5 58 107147.0 59 90991.0 60 74061.5 61 58113.0 62 44277.5 63 32902.5 64 23804.5 65 16891.0 66 12114.0 67 8931.5 68 6455.5 69 4481.5 70 3199.0 71 2226.5 72 1506.5 73 988.5 74 640.0 75 394.0 76 237.0 77 147.5 78 91.5 79 51.5 80 28.5 81 19.0 82 14.0 83 9.5 84 6.0 85 4.5 86 3.5 87 2.5 88 2.5 89 2.5 90 1.5 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.004088475243084607 6 0.0 7 0.0 8 0.0 9 1.5970606418299248E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 2.3965104890071663E-5 30-31 0.0 32-33 3.200453184170879E-5 34-35 0.0 36-37 4.5781683696114356E-4 38-39 2.4181997582928733E-5 40-41 2.1851229706277387E-4 42-43 4.063174893349786E-5 44-45 6.697008470817336E-4 46-47 0.0 48-49 4.13220237709074E-5 50-51 1.6620519793460126E-5 52-53 1.252977806171183E-4 54-55 0.0021497220980347172 56-57 0.001047368065409825 58-59 1.9546296465477203E-4 60-61 5.985842115205056E-4 62-63 8.603555970132238E-5 64-65 7.358891311166564E-4 66-67 0.0010809435835493987 68-69 4.3033662423752476E-4 70-71 6.637672134751471E-4 72-73 1.42721226374954E-4 74-75 2.066070416710234E-4 76-77 9.048415265074682E-6 78-79 0.0016320443799366494 80-81 0.0 82-83 0.001000302128290971 84-85 1.9600122043426593E-4 86-87 1.8814277214264042E-5 88-89 7.588087499375169E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 2.767758109012305E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 33.0 20-21 159.0 22-23 335.0 24-25 508.0 26-27 955.0 28-29 2108.0 30-31 6414.0 32-33 8630.0 34-35 12373.0 36-37 20743.0 38-39 25039.0 40-41 24582.0 42-43 29052.0 44-45 35314.0 46-47 36644.0 48-49 33995.0 50-51 31334.0 52-53 30830.0 54-55 33838.0 56-57 36155.0 58-59 36115.0 60-61 36040.0 62-63 35708.0 64-65 38519.0 66-67 42192.0 68-69 42368.0 70-71 46330.0 72-73 39317.0 74-75 39734.0 76-77 41538.0 78-79 42744.0 80-81 43055.0 82-83 41442.0 84-85 41628.0 86-87 43199.0 88-89 45173.0 90-91 45861.0 92-93 46646.0 94-95 57888.0 96-97 196194.0 98-99 447657.0 100-101 4443114.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.65383330428308 #Duplication Level Percentage of deduplicated Percentage of total 1 91.63541407076899 81.2383072379891 2 6.185941866712125 10.968149181629649 3 1.339624007170574 3.5628841026634746 4 0.41818650077578645 1.482953453195121 5 0.1830519953522406 0.8114130540986969 6 0.08865445262490193 0.47157342388143103 7 0.04602078131696556 0.2855943072784991 8 0.03101988433197486 0.22000253237480336 9 0.016722366121899025 0.13342516727616244 >10 0.05432418277415953 0.6838292654286642 >50 6.35381546530238E-4 0.03849957042373145 >100 3.553677574224933E-4 0.06825375943461334 >500 4.91427463978504E-5 0.03511494432599696 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.5970606418299248E-5 0.0 0.0 0.0 3 0.0 3.1941212836598495E-5 0.0 1.5970606418299248E-5 0.0 4 0.0 4.791181925489774E-5 0.0 1.5970606418299248E-5 0.0 5 0.0 4.791181925489774E-5 0.0 1.5970606418299248E-5 0.0 6 0.0 4.791181925489774E-5 0.0 3.1941212836598495E-5 3.1941212836598495E-5 7 0.0 4.791181925489774E-5 0.0 3.1941212836598495E-5 3.1941212836598495E-5 8 0.0 4.791181925489774E-5 0.0 3.1941212836598495E-5 3.1941212836598495E-5 9 0.0 4.791181925489774E-5 0.0 4.791181925489774E-5 4.791181925489774E-5 10-11 0.0 4.791181925489774E-5 0.0 4.791181925489774E-5 4.791181925489774E-5 12-13 0.0 4.791181925489774E-5 0.0 4.791181925489774E-5 4.791181925489774E-5 14-15 0.0 8.783833530064586E-5 0.0 6.388242567319699E-5 5.5897122464047363E-5 16-17 0.0 9.582363850979549E-5 0.0 8.783833530064586E-5 6.388242567319699E-5 18-19 0.0 1.0380894171894511E-4 0.0 1.1977954813724437E-4 6.388242567319699E-5 20-21 0.0 1.1179424492809474E-4 0.0 1.597060641829925E-4 6.388242567319699E-5 22-23 0.0 1.2776485134639398E-4 0.0 1.7567667060129174E-4 6.388242567319699E-5 24-25 0.0 1.4373545776469324E-4 0.0 2.0761788343789023E-4 6.388242567319699E-5 26-27 0.0 1.4373545776469324E-4 0.0 2.315737930653391E-4 6.388242567319699E-5 28-29 0.0 1.4373545776469324E-4 0.0 3.4336803799343385E-4 6.388242567319699E-5 30-31 0.0 2.2358848985618948E-4 0.0 8.06515624124112E-4 6.388242567319699E-5 32-33 0.0 2.2358848985618948E-4 0.0 0.001972369892659957 7.985303209149625E-5 34-35 0.0 2.8747091552938647E-4 0.0 0.00361734235374478 9.582363850979549E-5 36-37 0.0 3.3538273478428426E-4 0.0 0.006611831057175889 9.582363850979549E-5 38-39 0.0 3.912798572483316E-4 0.0 0.011187409796018623 9.582363850979549E-5 40-41 0.0 4.631475861306782E-4 0.0 0.01614628308890054 9.582363850979549E-5 42-43 0.0 4.7911819254897747E-4 0.0 0.02079372955662562 9.582363850979549E-5 44-45 0.0 5.509859214313241E-4 0.0 0.02651120665437675 9.582363850979549E-5 46-47 0.0 6.068830438953714E-4 0.0 0.03304318467946114 9.582363850979549E-5 48-49 0.0 6.068830438953714E-4 0.0 0.03922380936334295 1.1179424492809474E-4 50-51 0.0 6.547948631502692E-4 0.0 0.04542838995685221 1.1179424492809474E-4 52-53 0.0 6.547948631502692E-4 0.0 0.05125766129953144 1.1179424492809474E-4 54-55 0.0 6.707654695685684E-4 0.0 0.05718275628072046 1.1179424492809474E-4 56-57 0.0 6.78750772777718E-4 0.0 0.06147086410403381 1.1179424492809474E-4 58-59 0.0 6.867360759868677E-4 0.0 0.06566314828883736 1.1179424492809474E-4 60-61 0.0 6.867360759868677E-4 0.0 0.07007902096349711 1.1179424492809474E-4 62-63 0.0 6.867360759868677E-4 0.0 0.07429526105792811 1.1179424492809474E-4 64-65 0.0 7.506185016600647E-4 0.0 0.07851150115235911 1.1179424492809474E-4 66-67 0.0 8.06515624124112E-4 0.0 0.0830790945879927 1.2776485134639398E-4 68-69 0.0 8.145009273332617E-4 0.0 0.08729533468242369 1.5172076097384285E-4 70-71 0.0 8.145009273332617E-4 0.0 0.09131194219662594 1.7567667060129174E-4 72-73 0.0 8.224862305424113E-4 0.0 0.09454598999633154 1.7567667060129174E-4 74-75 0.0 8.544274433790098E-4 0.0 0.09685374262377579 1.7567667060129174E-4 76-77 0.0 9.023392626339075E-4 0.0 0.09958471632130497 1.7567667060129174E-4 78-79 0.0 9.262951722613564E-4 0.0 0.10127760060164467 1.7567667060129174E-4 80-81 1.5970606418299248E-5 9.342804754705061E-4 0.0 0.10195635137442241 1.7567667060129174E-4 82-83 1.5970606418299248E-5 9.422657786796557E-4 0.0 0.10238755774771649 1.7567667060129174E-4 84-85 1.5970606418299248E-5 9.582363850979549E-4 0.0 0.10272294048250077 1.7567667060129174E-4 86-87 1.5970606418299248E-5 9.821922947254038E-4 0.0 0.10281876412101056 1.7567667060129174E-4 88 1.5970606418299248E-5 0.001086001236444349 0.0 0.10281876412101056 1.7567667060129174E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6695 0.0 45.603004 1 GTATCAA 11880 0.0 35.96477 1 ATCAACG 13615 0.0 30.608408 3 TCAACGC 13710 0.0 30.5243 4 CAACGCA 13980 0.0 29.903397 5 AACGCAG 14505 0.0 28.90971 6 TATCAAC 15075 0.0 28.109594 2 ACGCAGA 16240 0.0 25.794134 7 CGCAGAG 16435 0.0 25.488085 8 CTTATAC 4290 0.0 20.348415 1 GCAGAGT 20720 0.0 20.153515 9 GTACATG 14565 0.0 19.335676 1 AGAGTAC 18215 0.0 19.16847 10-11 GAGTACT 11935 0.0 19.092672 12-13 TACATGG 14645 0.0 19.080286 2 GTGGTAT 3670 0.0 18.287746 1 ACATGGG 14765 0.0 18.123045 3 CAGAGTA 20310 0.0 17.731148 10-11 TGGTATC 3575 0.0 16.933151 2 TATGCCG 2525 0.0 16.160654 42-43 >>END_MODULE