##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138970_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5564651 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.645343436632412 32.0 30.0 33.0 18.0 34.0 2 31.59106420151057 33.0 31.0 33.0 28.0 34.0 3 32.34094123782426 33.0 33.0 34.0 30.0 34.0 4 32.59684821204421 33.0 33.0 34.0 31.0 34.0 5 32.933379649505426 33.0 33.0 34.0 32.0 34.0 6 36.49267905570358 38.0 37.0 38.0 34.0 38.0 7 36.620379067797785 38.0 37.0 38.0 34.0 38.0 8 36.66841622232913 38.0 38.0 38.0 34.0 38.0 9 36.90555148921289 38.0 38.0 38.0 35.0 38.0 10-11 37.03367048535479 38.0 38.0 38.0 36.0 38.0 12-13 37.092065612021315 38.0 38.0 38.0 36.0 38.0 14-15 37.09635968185606 38.0 38.0 38.0 36.0 38.0 16-17 37.05846215692593 38.0 38.0 38.0 36.0 38.0 18-19 37.09621744472385 38.0 38.0 38.0 36.0 38.0 20-21 37.06743553886754 38.0 38.0 38.0 36.0 38.0 22-23 37.11175611765946 38.0 38.0 38.0 36.0 38.0 24-25 37.11815041838024 38.0 38.0 38.0 36.0 38.0 26-27 37.053823566386036 38.0 38.0 38.0 36.0 38.0 28-29 37.04183400298518 38.0 38.0 38.0 36.0 38.0 30-31 36.91217270523565 38.0 38.0 38.0 35.5 38.0 32-33 37.006561291905044 38.0 38.0 38.0 36.0 38.0 34-35 37.021660670167236 38.0 38.0 38.0 36.0 38.0 36-37 36.94675070390894 38.0 38.0 38.0 36.0 38.0 38-39 36.97585758241122 38.0 38.0 38.0 36.0 38.0 40-41 36.904522203107135 38.0 38.0 38.0 35.5 38.0 42-43 36.889735776474765 38.0 38.0 38.0 35.0 38.0 44-45 36.88806450139307 38.0 38.0 38.0 35.5 38.0 46-47 36.84701653172543 38.0 38.0 38.0 35.0 38.0 48-49 36.81167551718289 38.0 38.0 38.0 35.0 38.0 50-51 36.82864799892707 38.0 38.0 38.0 35.0 38.0 52-53 36.741104046721 38.0 38.0 38.0 35.0 38.0 54-55 36.723630071936796 38.0 38.0 38.0 35.0 38.0 56-57 36.72887421705041 38.0 38.0 38.0 35.0 38.0 58-59 36.75048099401232 38.0 38.0 38.0 35.0 38.0 60-61 36.749141837669484 38.0 38.0 38.0 35.0 38.0 62-63 36.75199660058152 38.0 38.0 38.0 35.0 38.0 64-65 36.709787439485034 38.0 38.0 38.0 35.0 38.0 66-67 36.712023337676314 38.0 38.0 38.0 35.0 38.0 68-69 36.721839461760496 38.0 38.0 38.0 35.0 38.0 70-71 36.63780278389153 38.0 38.0 38.0 34.0 38.0 72-73 36.59219203569498 38.0 38.0 38.0 34.0 38.0 74-75 36.64094127378661 38.0 38.0 38.0 34.0 38.0 76-77 36.617182774463515 38.0 38.0 38.0 34.0 38.0 78-79 36.63470997321256 38.0 38.0 38.0 34.0 38.0 80-81 36.65776065277837 38.0 38.0 38.0 34.0 38.0 82-83 36.528702225456016 38.0 38.0 38.0 34.0 38.0 84-85 36.543423252540464 38.0 38.0 38.0 34.0 38.0 86-87 36.54085086619859 38.0 38.0 38.0 34.0 38.0 88-89 36.48976116777398 38.0 38.0 38.0 34.0 38.0 90-91 36.48725104106856 38.0 38.0 38.0 34.0 38.0 92-93 36.53044580870258 38.0 38.0 38.0 34.0 38.0 94-95 36.43529059284553 38.0 38.0 38.0 34.0 38.0 96-97 36.39761128537008 38.0 38.0 38.0 34.0 38.0 98-99 36.47074823421396 38.0 38.0 38.0 34.0 38.0 100 34.878956563297734 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 5.0 19 8.0 20 36.0 21 156.0 22 605.0 23 1916.0 24 4455.0 25 8873.0 26 15076.0 27 23955.0 28 35343.0 29 49589.0 30 66576.0 31 87667.0 32 114286.0 33 152091.0 34 217515.0 35 361689.0 36 895664.0 37 3529144.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.292059825494896 19.436205433188892 15.108782203951336 26.162952537364877 2 13.401972558566566 20.785310705019956 43.07702315922418 22.7356935771893 3 16.488653106906433 27.17133563272881 31.269921509902414 25.070089750462337 4 11.729702365880627 19.425746556253035 39.40985697036526 29.43469410750108 5 13.292318065887049 37.34120571515655 36.1871076868223 13.179368532134097 6 28.63463110887477 38.96223482159705 19.494631288580592 12.90850278094759 7 25.353539691887235 33.07093293002562 24.39137692552507 17.184150452562076 8 23.80278655390967 37.00429730453895 21.838746041755357 17.354170099796015 9 25.13997733191174 16.963148272910555 21.94311916416681 35.953755231010895 10-11 23.406777891371807 27.204410483245038 29.66199497506672 19.726816650316433 12-13 24.319162154104543 24.807979871513954 29.658643462096723 21.214214512284777 14-15 21.705655934217617 26.046476230045695 27.128197258013127 25.119670577723564 16-17 21.31255850546602 29.10779130622927 27.858009424131 21.72164076417371 18-19 21.38605817327987 28.38899510499401 29.311460862505122 20.913485859221 20-21 22.216573411876357 27.485224212694064 29.11236912453713 21.18583325089245 22-23 21.991227504238076 27.515236492029654 28.880612719669575 21.612923284062703 24-25 21.83344748737401 27.64158171311577 29.00252492802544 21.522445871484777 26-27 21.693621253943256 27.773155485001933 28.978774060112332 21.55444920094248 28-29 21.567923313091615 27.67758095375926 29.06838512267505 21.686110610474067 30-31 21.923707778402925 27.44972851079638 29.126156915497663 21.500406795303032 32-33 21.738313862630545 27.671403752502695 28.943910630145282 21.64637175472148 34-35 21.815181586658262 27.707275135629654 29.00801842395511 21.46952485375697 36-37 21.91247176591794 27.64317804656087 28.833630315054066 21.610719872467126 38-39 21.71436109863256 27.687427611901693 29.012954327229707 21.58525696223604 40-41 21.82448109743235 27.53829513876549 28.956660342499035 21.680563421303123 42-43 21.84162894099813 27.62726170401532 28.828647369534306 21.70246198545224 44-45 21.784365975058602 27.719292543849 28.718512450062317 21.77782903103008 46-47 21.963878738913404 27.616127457190785 28.454432654454347 21.965561149441463 48-49 21.940842952603155 27.737116385172516 28.460534755455413 21.86150590676891 50-51 21.831100212347646 27.830429541741054 28.46969423671396 21.868776009197337 52-53 22.020224187018865 27.838443564471543 28.374840559216917 21.766491689292668 54-55 21.9708691432684 27.754205194867264 28.33531419198343 21.939611469880905 56-57 22.05437771279335 27.930947148041884 28.163028918070577 21.85164622109419 58-59 21.829793994863802 27.948285944947166 28.456101977372427 21.765818082816608 60-61 22.006318488337033 28.056760624349792 28.240597835310776 21.696323052002402 62-63 21.924354727783115 28.183114534933296 28.240704971013823 21.65182576626976 64-65 21.97374160972374 28.034187681254103 28.171271505313705 21.82079920370845 66-67 21.986126703788074 28.064313364518906 28.05958027605194 21.889979655641078 68-69 21.946477656518418 28.00682157492692 28.15840325976453 21.88829750879013 70-71 21.970030648895385 27.822862239295542 28.21254406954285 21.994563042266225 72-73 22.04614934073819 27.735702270901097 28.192867795972187 22.025280592388523 74-75 21.968861301163567 27.83447473712454 28.12555006079001 22.071113900921876 76-77 22.066337376509765 27.83548529684388 28.037402492286212 22.060774834360142 78-79 21.98514905124348 27.805037066256023 28.044735572356323 22.165078310144175 80-81 22.003046558655857 27.822288810170004 28.079839292674002 22.094825338500137 82-83 22.1105409255768 27.794942706485188 28.110600241512618 21.983916126425395 84-85 22.12394490226441 27.786871316851812 28.068068265321433 22.021115515562347 86-87 22.008750806331008 27.81328795071675 28.14132843640582 22.03663280654642 88-89 22.1228713080078 27.750913449330998 28.04316343964779 22.083051803013415 90-91 22.109391670755567 27.8739074019009 28.00821995886115 22.008480968482385 92-93 22.15164498646439 27.817533840116926 28.055209664382307 21.975611509036376 94-95 22.0021371200982 27.9368622308178 28.012102987994155 22.048897661089843 96-97 22.119739567694193 28.048231074221686 28.066838499860836 21.765190858223285 98-99 23.239489339916418 29.88990355996199 28.3147927450817 18.55581435503989 100 21.988153510609425 30.826964204975262 22.381828064298134 24.80305422011718 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 718.0 1 734.5 2 1163.5 3 1711.0 4 2213.5 5 3117.5 6 3847.0 7 4619.5 8 5497.5 9 5877.0 10 5833.0 11 5952.0 12 6704.5 13 8028.0 14 10650.0 15 13757.5 16 16087.5 17 17585.0 18 17834.5 19 17093.5 20 16334.0 21 16400.0 22 18062.5 23 21866.5 24 27686.0 25 35734.0 26 45908.5 27 57412.0 28 70190.5 29 84258.5 30 98399.0 31 112069.0 32 125620.5 33 138864.5 34 151745.0 35 164242.0 36 176271.5 37 186812.5 38 195998.5 39 203686.0 40 210870.5 41 217121.5 42 220946.0 43 226946.5 44 233089.5 45 235950.5 46 235614.5 47 233453.0 48 229225.0 49 222243.5 50 215303.0 51 207867.0 52 196493.0 53 181631.5 54 167162.5 55 153086.0 56 139065.0 57 124393.0 58 109412.0 59 93703.0 60 76812.0 61 62042.0 62 49036.0 63 37523.0 64 28647.5 65 21106.0 66 15409.0 67 11145.5 68 7616.5 69 5291.0 70 3801.0 71 2716.5 72 1853.5 73 1165.5 74 730.0 75 474.5 76 289.0 77 163.0 78 98.5 79 60.5 80 38.0 81 23.5 82 17.5 83 13.0 84 10.0 85 9.0 86 7.0 87 5.0 88 4.0 89 3.5 90 1.5 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0039355567851425 6 1.7970578927591327E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.7972293911705713E-5 26-27 0.0 28-29 4.49449514234965E-5 30-31 0.0 32-33 5.4046472940687505E-5 34-35 0.0 36-37 4.7973043856142057E-4 38-39 5.455101378967802E-5 40-41 2.0098917737230952E-4 42-43 6.426334605104951E-5 44-45 6.92468089223867E-4 46-47 0.0 48-49 1.1228251928662799E-4 50-51 9.414241205098187E-6 52-53 1.0413994135974574E-4 54-55 0.0021326742354386666 56-57 0.0012165274157863687 58-59 1.446108036417628E-4 60-61 3.39629481702122E-4 62-63 1.4651548092339134E-4 64-65 6.783848306073077E-4 66-67 0.0012575202433529411 68-69 2.8935335312643305E-4 70-71 7.342564848426327E-4 72-73 1.9266542988981058E-4 74-75 1.6335885407031046E-4 76-77 0.0 78-79 0.0016677102803980338 80-81 0.0 82-83 9.254883055087378E-4 84-85 1.4832158237939602E-4 86-87 1.0674577809773047E-5 88-89 5.3795573592613655E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 2.910900471386744E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 36.0 20-21 111.0 22-23 315.0 24-25 399.0 26-27 992.0 28-29 2373.0 30-31 7362.0 32-33 9866.0 34-35 14014.0 36-37 22996.0 38-39 26793.0 40-41 26094.0 42-43 29336.0 44-45 35520.0 46-47 36280.0 48-49 33374.0 50-51 30226.0 52-53 29341.0 54-55 31149.0 56-57 33459.0 58-59 33309.0 60-61 34047.0 62-63 33202.0 64-65 35291.0 66-67 37686.0 68-69 39008.0 70-71 42635.0 72-73 33889.0 74-75 33852.0 76-77 35623.0 78-79 36651.0 80-81 36419.0 82-83 34862.0 84-85 35080.0 86-87 36574.0 88-89 37696.0 90-91 38451.0 92-93 39662.0 94-95 49572.0 96-97 173873.0 98-99 400292.0 100-101 3916941.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.75572536050511 #Duplication Level Percentage of deduplicated Percentage of total 1 91.83921949437831 81.51256542766188 2 6.0198452252354135 10.685914590474848 3 1.2901899156034145 3.435352254365698 4 0.42249110923411176 1.4999401943375197 5 0.17101015320066737 0.7589065095668168 6 0.0908322220960777 0.48371278549463265 7 0.054162998105843234 0.3365093329208647 8 0.025977809077298464 0.1844543430345871 9 0.020902275810250535 0.16696769861017133 >10 0.0643992195514767 0.8477718248191388 >50 7.37921391184838E-4 0.04319532259749677 >100 2.3165631595445848E-4 0.04470971611634649 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 3.5941157855182654E-5 0.0 4 0.0 5.391173678277398E-5 0.0 3.5941157855182654E-5 0.0 5 0.0 5.391173678277398E-5 0.0 3.5941157855182654E-5 0.0 6 0.0 5.391173678277398E-5 0.0 3.5941157855182654E-5 0.0 7 0.0 7.188231571036531E-5 0.0 3.5941157855182654E-5 0.0 8 0.0 7.188231571036531E-5 0.0 3.5941157855182654E-5 0.0 9 0.0 1.4376463142073062E-4 0.0 3.5941157855182654E-5 0.0 10-11 0.0 1.4376463142073062E-4 0.0 3.5941157855182654E-5 0.0 12-13 0.0 1.6173521034832194E-4 0.0 5.391173678277398E-5 0.0 14-15 0.0 2.3361752605868726E-4 0.0 1.1680876302934363E-4 0.0 16-17 0.0 2.605733944500742E-4 0.0 1.5274992088452628E-4 0.0 18-19 0.0 3.0549984176905256E-4 0.0 2.0666165766730025E-4 8.985289463795664E-6 20-21 0.0 3.6839686801562216E-4 0.0 2.3361752605868724E-4 1.7970578927591327E-5 22-23 1.7970578927591327E-5 4.133233153346005E-4 0.0 2.515881049862786E-4 1.7970578927591327E-5 24-25 1.7970578927591327E-5 4.312938942621918E-4 0.0 2.785439733776656E-4 1.7970578927591327E-5 26-27 1.7970578927591327E-5 4.4926447318978315E-4 0.0 3.1448513123284825E-4 1.7970578927591327E-5 28-29 1.7970578927591327E-5 4.5824976265357884E-4 0.0 4.4027918372598746E-4 1.7970578927591327E-5 30-31 1.7970578927591327E-5 5.750585256829225E-4 0.0 0.0010422935778002969 1.7970578927591327E-5 32-33 1.7970578927591327E-5 5.930291046105137E-4 0.0 0.0025518222077179683 3.5941157855182654E-5 34-35 1.7970578927591327E-5 6.469408413932877E-4 0.0 0.0043668506794046925 3.5941157855182654E-5 36-37 1.7970578927591327E-5 7.098378676398574E-4 0.0 0.007511701991733175 3.5941157855182654E-5 38-39 1.7970578927591327E-5 8.086760517416096E-4 0.0 0.012318831854863856 3.5941157855182654E-5 40-41 1.7970578927591327E-5 8.985289463795663E-4 0.0 0.017449432138691177 3.5941157855182654E-5 42-43 1.7970578927591327E-5 9.344701042347489E-4 0.0 0.022481194238416748 3.5941157855182654E-5 44-45 1.7970578927591327E-5 0.0010512788672640927 0.0 0.028007147258651083 3.5941157855182654E-5 46-47 1.7970578927591327E-5 0.0011321464724382536 0.0 0.03394642359422001 5.391173678277398E-5 48-49 1.7970578927591327E-5 0.0011321464724382536 0.0 0.04031699382405114 5.391173678277398E-5 50-51 1.7970578927591327E-5 0.0013208375511779625 0.0 0.04596874089677861 5.391173678277398E-5 52-53 1.7970578927591327E-5 0.001329822840641758 0.0 0.05183613491663718 5.391173678277398E-5 54-55 1.7970578927591327E-5 0.0013388081301055539 0.0 0.057784396541669905 5.391173678277398E-5 56-57 1.7970578927591327E-5 0.0013657639984969408 0.0 0.06356193766689053 6.289702624656965E-5 58-59 1.7970578927591327E-5 0.0013747492879607366 0.0 0.06907890539766107 7.188231571036531E-5 60-61 1.7970578927591327E-5 0.0014017051563521234 0.0 0.0739399469975745 7.188231571036531E-5 62-63 1.7970578927591327E-5 0.0014196757352797147 0.0 0.07864823867660344 7.188231571036531E-5 64-65 1.7970578927591327E-5 0.0016173521034832192 0.0 0.08341942738187894 8.086760517416097E-5 66-67 1.7970578927591327E-5 0.0016353226824108106 0.0 0.08797496914002334 8.985289463795663E-5 68-69 2.6955868391386992E-5 0.0016622785508021978 0.0 0.0928180401610092 8.985289463795663E-5 70-71 3.5941157855182654E-5 0.0017161902875849717 0.0 0.09651099413062922 8.985289463795663E-5 72-73 3.5941157855182654E-5 0.0017431461559763587 0.0 0.09964686015349392 8.985289463795663E-5 74-75 3.5941157855182654E-5 0.0018060431822229284 0.0 0.10203694715086355 8.985289463795663E-5 76-77 3.5941157855182654E-5 0.0018869107873970893 0.0 0.1046157252269729 8.985289463795663E-5 78-79 3.5941157855182654E-5 0.0019048813663246806 0.0 0.10612525385689058 8.985289463795663E-5 80-81 3.5941157855182654E-5 0.0019048813663246806 0.0 0.10651162130383379 8.985289463795663E-5 82-83 3.5941157855182654E-5 0.0019048813663246806 0.0 0.10678117998774767 8.985289463795663E-5 84-85 3.5941157855182654E-5 0.0019408225241798632 0.0 0.10696987106648737 8.985289463795663E-5 86-87 3.5941157855182654E-5 0.0019587931031074543 0.0 0.10706870925058912 8.985289463795663E-5 88 3.5941157855182654E-5 0.0020666165766730026 0.0 0.10706870925058912 8.985289463795663E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5750 0.0 50.604023 1 GTATCAA 10895 0.0 38.118587 1 TCAACGC 12940 0.0 31.420183 4 ATCAACG 12940 0.0 31.38647 3 CAACGCA 13265 0.0 30.683256 5 TATCAAC 13835 0.0 29.702896 2 AACGCAG 13780 0.0 29.535204 6 CTTATAC 4145 0.0 28.521465 1 ACGCAGA 15525 0.0 26.243567 7 CGCAGAG 16510 0.0 24.65143 8 GTACATG 15380 0.0 21.670258 1 TACATGG 15235 0.0 21.21792 2 GCAGAGT 19375 0.0 21.141289 9 ACATGGG 15160 0.0 20.48839 3 AGAGTAC 17120 0.0 19.708979 10-11 CGTACTA 2960 0.0 19.685328 28-29 TATACAC 6940 0.0 19.674873 3 TTATACA 6880 0.0 19.656235 2 GAGTACT 10570 0.0 19.644434 12-13 TATGCCG 3120 0.0 19.504908 42-43 >>END_MODULE