##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138969_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8279705 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.086457911242007 32.0 27.0 33.0 18.0 33.0 2 31.420663658910552 33.0 31.0 33.0 27.0 34.0 3 32.26627760288561 33.0 33.0 34.0 29.0 34.0 4 32.54887945886961 33.0 33.0 34.0 31.0 34.0 5 32.92324460835259 33.0 33.0 34.0 32.0 34.0 6 36.45255380475512 38.0 37.0 38.0 34.0 38.0 7 36.57218813955328 38.0 37.0 38.0 34.0 38.0 8 36.624423333923126 38.0 37.0 38.0 34.0 38.0 9 36.88405178686922 38.0 38.0 38.0 35.0 38.0 10-11 37.01913951040526 38.0 38.0 38.0 36.0 38.0 12-13 37.084316228657904 38.0 38.0 38.0 36.0 38.0 14-15 37.090542778999975 38.0 38.0 38.0 36.0 38.0 16-17 37.04632659013818 38.0 38.0 38.0 36.0 38.0 18-19 37.09070395623999 38.0 38.0 38.0 36.0 38.0 20-21 37.0630933996326 38.0 38.0 38.0 36.0 38.0 22-23 37.109927539643735 38.0 38.0 38.0 36.0 38.0 24-25 37.11719452917152 38.0 38.0 38.0 36.0 38.0 26-27 37.052887045611044 38.0 38.0 38.0 36.0 38.0 28-29 37.038455325579335 38.0 38.0 38.0 36.0 38.0 30-31 36.90534689449754 38.0 38.0 38.0 35.5 38.0 32-33 36.99469541694698 38.0 38.0 38.0 36.0 38.0 34-35 37.00206870123748 38.0 38.0 38.0 36.0 38.0 36-37 36.91758619839004 38.0 38.0 38.0 36.0 38.0 38-39 36.92560778812654 38.0 38.0 38.0 36.0 38.0 40-41 36.89585697005812 38.0 38.0 38.0 35.5 38.0 42-43 36.88649137782473 38.0 38.0 38.0 35.0 38.0 44-45 36.880202304293405 38.0 38.0 38.0 35.0 38.0 46-47 36.83331824798988 38.0 38.0 38.0 35.0 38.0 48-49 36.80015134744491 38.0 38.0 38.0 35.0 38.0 50-51 36.81477808373165 38.0 38.0 38.0 35.0 38.0 52-53 36.72318344837639 38.0 38.0 38.0 35.0 38.0 54-55 36.70469186490351 38.0 38.0 38.0 35.0 38.0 56-57 36.70667498858644 38.0 38.0 38.0 35.0 38.0 58-59 36.72779558422798 38.0 38.0 38.0 35.0 38.0 60-61 36.71784970809932 38.0 38.0 38.0 35.0 38.0 62-63 36.722221382222244 38.0 38.0 38.0 35.0 38.0 64-65 36.678230192921035 38.0 38.0 38.0 34.5 38.0 66-67 36.679932353973264 38.0 38.0 38.0 34.0 38.0 68-69 36.686931610731456 38.0 38.0 38.0 34.5 38.0 70-71 36.601086630979374 38.0 38.0 38.0 34.0 38.0 72-73 36.55346170704706 38.0 38.0 38.0 34.0 38.0 74-75 36.60607525021641 38.0 38.0 38.0 34.0 38.0 76-77 36.58528823322073 38.0 38.0 38.0 34.0 38.0 78-79 36.604923160467806 38.0 38.0 38.0 34.0 38.0 80-81 36.627436955134954 38.0 38.0 38.0 34.0 38.0 82-83 36.49831338516343 38.0 38.0 38.0 34.0 38.0 84-85 36.51517251268161 38.0 38.0 38.0 34.0 38.0 86-87 36.51036701734527 38.0 38.0 38.0 34.0 38.0 88-89 36.46103636603734 38.0 38.0 38.0 34.0 38.0 90-91 36.45686254254265 38.0 38.0 38.0 34.0 38.0 92-93 36.50346893510707 38.0 38.0 38.0 34.0 38.0 94-95 36.40734729755276 38.0 38.0 38.0 34.0 38.0 96-97 36.370694732145964 38.0 37.5 38.0 34.0 38.0 98-99 36.441455196951594 38.0 37.5 38.0 34.0 38.0 100 34.81879436813185 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 16.0 20 72.0 21 231.0 22 957.0 23 2803.0 24 6762.0 25 13136.0 26 22916.0 27 36243.0 28 53435.0 29 75365.0 30 100918.0 31 132217.0 32 172628.0 33 230924.0 34 330557.0 35 555339.0 36 1383782.0 37 5161399.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.77936472374318 19.416005763490364 14.932935412553949 26.87169410021251 2 13.175396949529 20.614055694013253 43.77605240766428 22.434494948793464 3 16.34707999862314 27.60908752183804 31.459381705024512 24.58445077451431 4 11.494443340674577 19.850453609156364 39.252268045781825 29.402835004387235 5 13.021582620851552 37.57039918264539 36.37246112124403 13.03555707525902 6 28.0456765121072 39.20119608140581 19.63567779717729 13.117449609309705 7 24.883471089851632 33.134320606833214 24.32939337814572 17.652814925169437 8 23.436475091805807 37.22740121779701 22.106355238501855 17.22976845189533 9 24.873836069502 16.952405544932525 21.834898928753972 36.3388594568115 10-11 23.207765252505975 27.28217973949555 29.782437900867244 19.72761710713123 12-13 24.26338257220517 24.758243198278198 29.706444855221292 21.27192937429534 14-15 21.57092553418268 26.044714153463193 27.03233388146075 25.35202643089337 16-17 21.273819538256497 29.282860923185066 27.7114945520402 21.731824986518237 18-19 21.396172931281974 28.275137821939307 29.250353726370687 21.078335520408036 20-21 22.090985813000948 27.415321113521657 28.993068797207588 21.500624276269804 22-23 21.806738913628674 27.788624793415185 28.820199130673934 21.58443716228221 24-25 21.765018801699238 27.93997975303828 28.97093566884851 21.32406577641397 26-27 21.708646555685647 28.088144478596828 28.997532233896102 21.205676731821427 28-29 21.432434574736998 27.707712462336914 29.281955744847032 21.577897218079052 30-31 21.694456898298682 28.112901322430044 28.887996564187162 21.304645215084108 32-33 22.192267065358422 27.568915022765434 28.940041496488927 21.298776415387216 34-35 21.790769282278088 27.579992626954848 29.079778944509403 21.549459146257657 36-37 21.481989195902017 28.099493129066683 28.95879775820563 21.459719916825673 38-39 21.445763155166357 27.58067104787822 29.30222117980394 21.671344617151487 40-41 21.60294241334621 27.48320765292685 29.277111022569674 21.636738911157263 42-43 21.826905179619803 27.448386324798346 29.162959605417534 21.561748890164317 44-45 21.52416762634583 27.765723571819628 29.054106420543686 21.656002381290858 46-47 21.966983437116607 27.405712613563 28.59279276735308 22.03451118196731 48-49 21.88369647524673 27.4713335496839 28.635601492315782 22.009368482753587 50-51 21.58611150928548 27.639093909134605 28.845780580503423 21.929014001076492 52-53 21.72792087874374 27.652015718439866 29.053380140531072 21.56668326228533 54-55 21.709093683934512 27.676151588029956 28.639888292990705 21.97486643504482 56-57 22.01853223655817 27.983284270466303 28.193354933877856 21.804828559097672 58-59 21.482011140326147 28.278937864635108 28.833775794647465 21.405275200391277 60-61 21.87646318246224 28.717947044461166 28.064673399073612 21.34091637400298 62-63 21.536795569478993 29.091632257503136 28.061861309886993 21.309710863130878 64-65 21.598197232536666 28.907114923314463 28.031886174784397 21.462801669364474 66-67 21.627823087978033 28.8269186260737 27.980771837585223 21.564486448363045 68-69 21.653050211412143 28.638235783243243 28.096470673604173 21.61224333174044 70-71 21.751439677713428 28.21736278896745 28.24148097379932 21.7897165595198 72-73 21.88400692272395 27.922526903216287 28.29936194544737 21.894104228612385 74-75 21.818538730320757 27.982578139358903 28.28313164059908 21.91575148972126 76-77 21.917842641388198 27.931108098214217 28.184847057374217 21.966202203023364 78-79 21.861859048874464 27.938903535402552 28.203323736606528 21.995913679116455 80-81 21.824357905110094 27.982368386811913 28.222782023689412 21.970491684388577 82-83 21.97328776827813 27.85626969459664 28.286831946059245 21.88361059106598 84-85 22.01188653153454 27.919952311745067 28.174527515643554 21.89363364107684 86-87 21.895636189231553 27.92988984763818 28.2585293670845 21.915944596045772 88-89 21.975684834210007 27.907637628302172 28.142820204887148 21.97385733260067 90-91 22.006429439950253 27.962541201901814 28.144571713055242 21.886457645092694 92-93 22.04967302064875 27.91563060474153 28.175263441521896 21.859432933087824 94-95 21.883264869943684 27.98714317547705 28.166684306430128 21.962907648149134 96-97 21.976593723803003 28.09868230807136 28.22406460591726 21.70065936220838 98-99 23.0823858302489 30.00994551219388 28.480064781588677 18.427603875968547 100 21.924668903784003 30.933850205038066 22.46064178197895 24.680839109198978 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1075.0 1 1146.0 2 1970.0 3 2897.0 4 3679.5 5 5242.5 6 6480.0 7 7664.5 8 9024.5 9 9551.0 10 9379.5 11 9420.0 12 10479.0 13 12610.0 14 16773.5 15 21949.0 16 26019.5 17 28417.0 18 28540.0 19 26955.0 20 25291.0 21 24865.0 22 26787.5 23 31959.0 24 40515.0 25 52624.0 26 68053.5 27 85465.0 28 104932.5 29 126039.0 30 146563.5 31 167252.0 32 188642.5 33 209093.5 34 229209.5 35 247216.5 36 265224.5 37 282727.5 38 296556.0 39 308271.5 40 317744.0 41 325771.5 42 334295.5 43 356693.0 44 379178.5 45 382459.5 46 370540.5 47 353052.0 48 339181.5 49 326538.5 50 315095.5 51 301338.0 52 283450.5 53 263225.5 54 242598.0 55 221866.5 56 200473.0 57 178567.0 58 156486.0 59 132797.0 60 107497.0 61 85503.5 62 66525.5 63 50347.0 64 37460.5 65 26826.5 66 19383.0 67 14033.0 68 9778.0 69 6650.0 70 4579.0 71 3227.5 72 2207.5 73 1436.5 74 897.0 75 545.0 76 340.0 77 203.5 78 134.5 79 91.5 80 54.0 81 35.5 82 27.5 83 19.0 84 14.5 85 11.0 86 5.5 87 4.0 88 5.0 89 4.5 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0037682501973198322 6 1.2077724991409718E-5 7 0.0 8 0.0 9 1.2077724991409718E-5 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.2079083207247837E-5 26-27 0.0 28-29 1.812467711642912E-5 30-31 0.0 32-33 1.8161975398151365E-5 34-35 0.0 36-37 4.8662487207848674E-4 38-39 4.887606136658323E-5 40-41 1.6575911504769226E-4 42-43 8.637206184609794E-5 44-45 6.329219568135011E-4 46-47 0.0 48-49 7.547107156091534E-5 50-51 6.328598824171654E-6 52-53 5.7284766968432214E-5 54-55 0.0018244496611612886 56-57 0.0010241902793520856 58-59 9.076564582544807E-5 60-61 2.93696202605999E-4 62-63 1.1829710528297785E-4 64-65 6.156412191258411E-4 66-67 0.0010149785458909862 68-69 2.5626465935008584E-4 70-71 4.362795633086978E-4 72-73 1.793234168863206E-4 74-75 9.728215208132732E-5 76-77 3.499749942866582E-5 78-79 0.0015658859197089877 80-81 0.0 82-83 0.0010248305697068971 84-85 1.877714290171278E-4 86-87 0.0 88-89 7.339363354265199E-6 90-91 0.0 92-93 0.0 94-95 7.5383598865778375E-6 96-97 2.982734555744632E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 71.0 20-21 245.0 22-23 467.0 24-25 730.0 26-27 1467.0 28-29 3611.0 30-31 10918.0 32-33 14200.0 34-35 20417.0 36-37 33575.0 38-39 40018.0 40-41 39089.0 42-43 44245.0 44-45 53338.0 46-47 54468.0 48-49 50479.0 50-51 45950.0 52-53 44175.0 54-55 47531.0 56-57 50115.0 58-59 50467.0 60-61 53216.0 62-63 53691.0 64-65 62592.0 66-67 71244.0 68-69 73616.0 70-71 95485.0 72-73 56097.0 74-75 51586.0 76-77 53928.0 78-79 56195.0 80-81 56140.0 82-83 53804.0 84-85 53750.0 86-87 55763.0 88-89 58105.0 90-91 58891.0 92-93 60435.0 94-95 74586.0 96-97 256994.0 98-99 587124.0 100-101 5730887.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.8836589021469 #Duplication Level Percentage of deduplicated Percentage of total 1 90.02724427457217 77.31869139177616 2 7.023606138401488 12.064259877069972 3 1.7131539472959212 4.413957877692884 4 0.5974744569177252 2.0525316984266953 5 0.2527744177811042 1.0854595937950566 6 0.13723490142773226 0.7071741278213466 7 0.07921214855188978 0.47621204029956843 8 0.046946986924061254 0.32255832091757025 9 0.028540938817149617 0.22060802287072098 >10 0.0922432982769475 1.2159926352034498 >50 0.001262335582294816 0.06807419476225879 >100 2.843548817195979E-4 0.039651502733923656 >500 2.1800569861570792E-5 0.014828716630439475 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2077724991409718E-5 2 0.0 2.4155449982819437E-5 0.0 0.0 1.2077724991409718E-5 3 0.0 2.4155449982819437E-5 0.0 0.0 1.2077724991409718E-5 4 0.0 3.6233174974229154E-5 0.0 0.0 1.2077724991409718E-5 5 0.0 3.6233174974229154E-5 0.0 0.0 1.2077724991409718E-5 6 0.0 3.6233174974229154E-5 0.0 0.0 1.2077724991409718E-5 7 0.0 4.8310899965638874E-5 0.0 0.0 1.2077724991409718E-5 8 0.0 4.8310899965638874E-5 0.0 1.2077724991409718E-5 2.4155449982819437E-5 9 0.0 1.0869952492268747E-4 0.0 1.2077724991409718E-5 2.4155449982819437E-5 10-11 0.0 1.0869952492268747E-4 0.0 1.2077724991409718E-5 2.4155449982819437E-5 12-13 0.0 1.0869952492268747E-4 0.0 1.2077724991409718E-5 3.0194312478524294E-5 14-15 0.0 1.4493269989691661E-4 0.0 2.4155449982819437E-5 6.642748745275345E-5 16-17 0.0 1.4493269989691661E-4 0.0 2.4155449982819437E-5 8.454407493986803E-5 18-19 0.0 1.5701042488832633E-4 0.0 2.4155449982819437E-5 9.058293743557289E-5 20-21 0.0 1.6908814987973605E-4 0.0 4.8310899965638874E-5 1.2077724991409719E-4 22-23 0.0 1.9928246235826036E-4 0.0 6.642748745275345E-5 1.2077724991409719E-4 24-25 0.0 2.234379123410798E-4 0.0 7.246634994845831E-5 1.2077724991409719E-4 26-27 0.0 2.2947677483678466E-4 0.0 8.454407493986803E-5 1.2077724991409719E-4 28-29 0.0 2.2947677483678466E-4 0.0 1.7512701237544091E-4 1.2681611240980203E-4 30-31 0.0 2.8986539979383323E-4 0.0 5.736919370919616E-4 1.328549749055069E-4 32-33 0.0 2.8986539979383323E-4 0.0 0.001968669173599784 1.328549749055069E-4 34-35 0.0 3.381762997594721E-4 0.0 0.003786366784806946 1.328549749055069E-4 36-37 0.0 3.985649247165207E-4 0.0 0.006600476707805411 1.328549749055069E-4 38-39 0.0 4.2272037469934015E-4 0.0 0.010882030217260155 1.328549749055069E-4 40-41 0.0 4.8310899965638875E-4 0.0 0.015652731588866993 1.328549749055069E-4 42-43 0.0 5.133033121349131E-4 0.0 0.020363044335516785 1.3889383740121175E-4 44-45 0.0 5.676530745962568E-4 0.0 0.025610815844284308 1.4493269989691661E-4 46-47 0.0 5.918085245790762E-4 0.0 0.031021636640435862 1.4493269989691661E-4 48-49 0.0 5.918085245790762E-4 0.0 0.03687329439877387 1.5701042488832633E-4 50-51 0.0 6.280416995533054E-4 0.0 0.04259813604470207 1.630492873840312E-4 52-53 0.0 6.401194245447151E-4 0.0 0.04808142319080209 1.6908814987973605E-4 54-55 0.0 6.401194245447151E-4 0.0 0.05334127242456102 1.6908814987973605E-4 56-57 0.0 6.582360120318296E-4 0.0 0.05784022498386114 1.8116587487114577E-4 58-59 6.038862495704859E-6 6.642748745275344E-4 0.0 0.06227878891820421 1.932435998625555E-4 60-61 1.2077724991409718E-5 6.703137370232394E-4 0.0 0.06666300309008594 1.932435998625555E-4 62-63 1.2077724991409718E-5 6.763525995189442E-4 0.0 0.07104721726196767 1.932435998625555E-4 64-65 1.2077724991409718E-5 7.488189494674025E-4 0.0 0.0754374702963451 1.932435998625555E-4 66-67 1.2077724991409718E-5 7.488189494674025E-4 0.0 0.07990018968067099 1.932435998625555E-4 68-69 1.2077724991409718E-5 7.608966744588122E-4 0.0 0.08419382091511715 2.0532132485396522E-4 70-71 1.2077724991409718E-5 7.72974399450222E-4 0.0 0.08825193651223082 2.1739904984537494E-4 72-73 1.2077724991409718E-5 7.72974399450222E-4 0.0 0.09131967866004888 2.4155449982819438E-4 74-75 1.2077724991409718E-5 7.910909869373365E-4 0.0 0.09352386347098116 2.4155449982819438E-4 76-77 1.2077724991409718E-5 8.092075744244511E-4 0.0 0.09601187481921156 2.4155449982819438E-4 78-79 1.2077724991409718E-5 8.092075744244511E-4 0.0 0.09734646343076234 2.4155449982819438E-4 80-81 1.2077724991409718E-5 8.15246436920156E-4 0.0 0.09778730039294878 2.4759336232389924E-4 82-83 1.2077724991409718E-5 8.212852994158609E-4 0.0 0.0981617098676825 2.5363222481960407E-4 84-85 1.2077724991409718E-5 8.212852994158609E-4 0.0 0.09832475915506651 2.5363222481960407E-4 86-87 1.2077724991409718E-5 8.333630244072705E-4 0.0 0.09846365299246773 2.5363222481960407E-4 88 1.2077724991409718E-5 9.058293743557288E-4 0.0 0.09848176957995484 2.777876748024235E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9750 0.0 51.03177 1 CTTATAC 9690 0.0 50.047245 1 TATACAC 14075 0.0 37.172165 3 GTATCAA 18340 0.0 36.654793 1 TTATACA 13820 0.0 36.317314 2 TCAACGC 21635 0.0 30.831259 4 ATCAACG 21600 0.0 30.800743 3 CAACGCA 22100 0.0 30.143219 5 TATCAAC 22990 0.0 29.27873 2 AACGCAG 23045 0.0 28.943289 6 ACATCTC 17660 0.0 27.926811 8 ACACATC 17605 0.0 27.816599 6 TACACAT 18775 0.0 27.589006 5 ACGCAGA 25680 0.0 26.041128 7 CACATCT 19120 0.0 25.612513 7 CGCAGAG 26735 0.0 25.094772 8 CATCTCC 20050 0.0 24.359486 9 ATACACA 23165 0.0 23.486149 4 GCAGAGT 31135 0.0 21.534422 9 GTACATG 25125 0.0 21.100538 1 >>END_MODULE