##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138967_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9916648 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.58553999294923 33.0 33.0 33.0 33.0 33.0 2 32.60003238997694 33.0 33.0 33.0 33.0 33.0 3 32.593581117329165 33.0 33.0 33.0 33.0 33.0 4 36.502275466468106 37.0 37.0 37.0 37.0 37.0 5 36.531172125903836 37.0 37.0 37.0 37.0 37.0 6 36.52193493204559 37.0 37.0 37.0 37.0 37.0 7 36.50189751617684 37.0 37.0 37.0 37.0 37.0 8 36.48684515170852 37.0 37.0 37.0 37.0 37.0 9 36.52255348783178 37.0 37.0 37.0 37.0 37.0 10-11 36.47746516766553 37.0 37.0 37.0 37.0 37.0 12-13 36.41430965382658 37.0 37.0 37.0 37.0 37.0 14-15 38.475127734694226 40.0 37.0 40.0 37.0 40.0 16-17 38.439362020311705 40.0 37.0 40.0 37.0 40.0 18-19 38.45217920410203 40.0 37.0 40.0 37.0 40.0 20-21 38.45053474475009 40.0 37.0 40.0 37.0 40.0 22-23 38.44481986743626 40.0 37.0 40.0 37.0 40.0 24-25 38.446941062678555 40.0 37.0 40.0 37.0 40.0 26-27 38.308060614306385 40.0 37.0 40.0 37.0 40.0 28-29 38.23491480930106 40.0 37.0 40.0 37.0 40.0 30-31 38.199622674915815 40.0 37.0 40.0 37.0 40.0 32-33 38.12494552847157 40.0 37.0 40.0 35.0 40.0 34-35 38.09251296690678 40.0 37.0 40.0 33.0 40.0 36-37 38.06176307567722 40.0 37.0 40.0 33.0 40.0 38-39 38.021553578285875 40.0 37.0 40.0 33.0 40.0 40-41 37.99349466278718 40.0 37.0 40.0 33.0 40.0 42-43 37.907064100164305 40.0 37.0 40.0 33.0 40.0 44-45 37.87014363302111 40.0 37.0 40.0 33.0 40.0 46-47 37.84518817658882 40.0 37.0 40.0 33.0 40.0 48-49 37.82760708187273 40.0 37.0 40.0 33.0 40.0 50-51 37.7782289744852 40.0 37.0 40.0 33.0 40.0 52-53 37.690345239427465 40.0 37.0 40.0 33.0 40.0 54-55 37.502398485174254 40.0 37.0 40.0 33.0 40.0 56-57 37.334468897635105 40.0 37.0 40.0 33.0 40.0 58-59 37.28786955465171 40.0 37.0 40.0 33.0 40.0 60-61 37.169471682669005 37.0 37.0 40.0 33.0 40.0 62-63 37.00264838004585 37.0 37.0 40.0 33.0 40.0 64-65 36.869371743005246 37.0 37.0 40.0 33.0 40.0 66-67 36.66483059103619 37.0 37.0 40.0 33.0 40.0 68-69 36.454268683640564 37.0 37.0 40.0 33.0 40.0 70-71 36.20277518310773 37.0 37.0 40.0 33.0 40.0 72-73 35.992187452110926 37.0 37.0 37.0 33.0 40.0 74-75 35.80793884099586 37.0 35.0 37.0 33.0 40.0 76-77 34.03101980090531 35.0 33.0 37.0 27.0 37.0 78-79 35.22986466677645 37.0 33.0 37.0 33.0 37.0 80-81 35.2719958246242 37.0 33.0 37.0 33.0 37.0 82-83 35.13866357225881 37.0 33.0 37.0 33.0 37.0 84-85 34.97429896486537 37.0 33.0 37.0 33.0 37.0 86-87 34.83993118561564 37.0 33.0 37.0 33.0 37.0 88-89 34.75483252240383 37.0 33.0 37.0 33.0 37.0 90-91 34.66736204266998 37.0 33.0 37.0 33.0 37.0 92-93 34.590485779611285 37.0 33.0 37.0 33.0 37.0 94-95 34.57329142472099 37.0 33.0 37.0 33.0 37.0 96-97 34.57036198049846 37.0 33.0 37.0 33.0 37.0 98-99 34.57067351215784 37.0 33.0 37.0 33.0 37.0 100 34.573071032402325 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 14.0 20 70.0 21 346.0 22 1415.0 23 3950.0 24 9195.0 25 17970.0 26 31567.0 27 50722.0 28 75004.0 29 105206.0 30 144031.0 31 191553.0 32 255536.0 33 343866.0 34 474087.0 35 681449.0 36 1157739.0 37 2719676.0 38 3560550.0 39 92702.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.715113413322726 21.52080017360705 15.15768231362049 23.606404099449733 2 13.953646433754633 21.89832693466583 42.09819689072356 22.049829740855984 3 16.67499945546116 27.570364502198725 31.5421299616564 24.212506080683717 4 11.814586945104837 19.33226832292525 40.279931283231996 28.57321344873792 5 12.735976914780075 38.33686544082234 36.335554110622866 12.59160353377472 6 28.170729936458343 39.32118567531516 19.76742333394241 12.740661054284091 7 24.798954243409668 33.49310170130068 24.89885695247023 16.80908710281942 8 23.397270932678058 37.24320960066345 22.28559489053156 17.073924576126934 9 25.021821889815993 16.91432427570284 22.441998546282978 35.62185528819819 10-11 23.135766075047098 27.490043215437492 30.00011748120893 19.374073228306475 12-13 24.094894617083046 25.18181217262351 29.984597072702634 20.73869613759081 14-15 21.364742394174357 26.572436391463157 27.710962994128813 24.351858220233673 16-17 20.785687865496485 29.392335999019025 28.512179720405523 21.309796415078967 18-19 20.749849142573176 28.70604058952178 30.132631510163517 20.411478757741527 20-21 21.657713134142444 27.912866222203576 29.872113665626504 20.557306978027476 22-23 21.386353976409563 27.796213122887508 29.657394377507444 21.16003852319548 24-25 21.131967996436426 27.942726621467017 29.771660194443093 21.153645187653463 26-27 21.102901938300178 28.129713709197507 29.66207077103108 21.105313581471236 28-29 21.037314886885277 28.2174019704344 29.698084787838592 21.04719835484174 30-31 21.30380740745232 28.03813470685782 29.62997601991166 21.0280818657782 32-33 21.21748459416252 28.10840339852233 29.498008977293743 21.1761030300214 34-35 21.274526334868465 28.21548868019607 29.453786243550123 21.05619874138534 36-37 21.295945383710567 28.179811580563413 29.391287425209157 21.132955610516866 38-39 21.175791293607684 28.30822389181397 29.431911536135306 21.084073278443032 40-41 21.430218082424975 28.180441761783428 29.293189682821406 21.09615047297019 42-43 21.376222052239342 28.280240176191413 29.043440786847068 21.300096984722177 44-45 21.4592587665264 28.425458239677674 28.84678824230666 21.268494751489268 46-47 21.485263727358145 28.40777502914893 28.582487409149376 21.524473834343546 48-49 21.479483857432076 28.507530488500354 28.558959712292737 21.454025941774834 50-51 21.503415662117103 28.610509013104323 28.40106451898583 21.485010805792744 52-53 21.580311684811754 28.52239175002226 28.330706185741345 21.566590379424646 54-55 21.61549786506559 28.467059186483073 28.351230219762858 21.566212728688477 56-57 21.652942518650434 28.47934486557877 28.27323711100783 21.594475504762958 58-59 21.534699058222735 28.583023100221865 28.35976013980483 21.522517701750576 60-61 21.677409134998683 28.570660892125854 28.29031258258986 21.461617390285603 62-63 21.589897650848126 28.619634977743893 28.235613177159152 21.554854194248833 64-65 21.569536189392235 28.553553264754246 28.215497000466357 21.661413545387163 66-67 21.64604514526642 28.601457486476455 28.092431988804485 21.66006537945264 68-69 21.5828767737124 28.565964502851564 28.170639626568928 21.68051909686711 70-71 21.6244602151247 28.35494108784062 28.222549018992403 21.79804967804228 72-73 21.65470327184028 28.423584702284828 28.161992088721536 21.759719937153353 74-75 21.579950841969957 28.51648638635378 28.12203026756802 21.78153250410824 76-77 21.660499281473374 28.473793809479197 28.02190721611828 21.843799692929146 78-79 21.622318596111427 28.428438379982058 28.08259202493757 21.866650998968947 80-81 21.604640017493345 28.456539728725893 28.100162727839635 21.838657525941123 82-83 21.64745165470835 28.461122851652 28.16481967621064 21.72660581742901 84-85 21.778866237332085 28.469956657945712 28.02071285424446 21.73046425047774 86-87 21.643365334627756 28.461433832991517 28.07568539547739 21.819515436903338 88-89 21.689285846767707 28.40305343963765 28.09989320232127 21.80776751127338 90-91 21.682456574062854 28.447553243437955 28.12484985787898 21.745140324620213 92-93 21.75435688544501 28.386558381463338 28.125058780444483 21.73402595264717 94-95 21.553826615317558 28.510715637802885 28.174266129138463 21.76119161774109 96-97 21.619595728107193 28.64397247229415 28.240269963674724 21.49616183592393 98-99 22.690535966149504 30.49086741889986 28.504005641748943 18.314590973201692 100 21.59531645986485 31.62652243777892 22.338095822480796 24.44006527987543 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1862.0 1 1833.5 2 3031.5 3 4513.0 4 6296.0 5 10434.0 6 13649.0 7 15140.5 8 15335.0 9 14252.0 10 12795.0 11 11447.0 12 12493.5 13 16692.5 14 26675.0 15 40797.5 16 52124.0 17 58005.5 18 59413.0 19 57301.0 20 52983.0 21 49068.0 22 48114.5 23 52372.0 24 62448.5 25 78471.0 26 98952.5 27 121619.0 28 145542.0 29 171689.0 30 196886.5 31 221673.0 32 247713.0 33 271889.5 34 296505.5 35 319591.5 36 341056.0 37 361088.0 38 373397.5 39 381340.5 40 391936.5 41 399381.0 42 401714.5 43 402935.0 44 404220.5 45 404696.0 46 401911.0 47 396962.0 48 389172.5 49 377108.0 50 362019.5 51 344176.0 52 322980.5 53 297841.5 54 271608.5 55 245033.0 56 219350.5 57 193595.5 58 167344.0 59 142626.5 60 116897.0 61 92980.5 62 72882.5 63 55679.0 64 41098.0 65 30527.0 66 23012.5 67 17049.5 68 12676.0 69 9047.5 70 6261.0 71 4414.5 72 3136.0 73 2235.5 74 1625.0 75 1117.5 76 723.5 77 484.0 78 318.5 79 207.0 80 141.0 81 101.5 82 83.5 83 64.0 84 43.0 85 30.0 86 22.5 87 17.5 88 14.0 89 12.0 90 8.5 91 5.5 92 5.0 93 2.5 94 0.0 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 4.033621038076576E-5 7 0.0 8 0.0 9 0.0 10-11 0.0016991628622897575 12-13 2.672273937725731E-4 14-15 0.007684048077535878 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 144.0 20-21 628.0 22-23 1425.0 24-25 3178.0 26-27 4301.0 28-29 7349.0 30-31 17040.0 32-33 21827.0 34-35 31035.0 36-37 43605.0 38-39 49856.0 40-41 54149.0 42-43 64554.0 44-45 77778.0 46-47 75451.0 48-49 66309.0 50-51 56113.0 52-53 54414.0 54-55 57526.0 56-57 61546.0 58-59 62195.0 60-61 61012.0 62-63 60713.0 64-65 65493.0 66-67 69732.0 68-69 70293.0 70-71 69282.0 72-73 67470.0 74-75 69967.0 76-77 69312.0 78-79 73976.0 80-81 76086.0 82-83 74170.0 84-85 76078.0 86-87 80579.0 88-89 86386.0 90-91 90685.0 92-93 96831.0 94-95 118494.0 96-97 336238.0 98-99 621969.0 100-101 6771459.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.18089633313127 #Duplication Level Percentage of deduplicated Percentage of total 1 86.51309453655568 69.36697464493957 2 8.769977701314586 14.063693458259555 3 2.4870943269979224 5.982523572112179 4 1.0151201482763497 3.255729734984753 5 0.4652542327590921 1.8652250702703648 6 0.25067865421075236 1.2059783511720716 7 0.1463211010794363 0.8212509925899933 8 0.09411277129853689 0.6036837087289342 9 0.06668636136718459 0.48122750048543605 >10 0.18932151574032852 2.1860580708216593 >50 0.002016849604817932 0.10521156804938701 >100 2.754718003441078E-4 0.04301545783331671 >500 4.632899487712445E-5 0.019427869752856104 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.016810519038288E-5 0.0 0.0 0.0 3 0.0 2.016810519038288E-5 0.0 0.0 0.0 4 0.0 8.067242076153152E-5 0.0 1.008405259519144E-5 0.0 5 0.0 8.067242076153152E-5 0.0 1.008405259519144E-5 0.0 6 0.0 8.067242076153152E-5 0.0 1.008405259519144E-5 2.016810519038288E-5 7 0.0 8.067242076153152E-5 0.0 1.008405259519144E-5 2.016810519038288E-5 8 0.0 1.2100863114229727E-4 0.0 1.008405259519144E-5 2.016810519038288E-5 9 0.0 1.3109268373748872E-4 0.0 5.04202629759572E-5 2.016810519038288E-5 10-11 0.0 1.4117673633268015E-4 0.0 5.04202629759572E-5 2.016810519038288E-5 12-13 0.0 1.4117673633268015E-4 0.0 5.04202629759572E-5 2.016810519038288E-5 14-15 0.0 1.6638686782065876E-4 0.0 5.04202629759572E-5 2.016810519038288E-5 16-17 0.0 1.7142889411825448E-4 0.0 5.546228927355292E-5 2.016810519038288E-5 18-19 0.0 1.9159699930863734E-4 0.0 6.554634186874436E-5 2.016810519038288E-5 20-21 0.0 2.1176510449902024E-4 0.0 8.067242076153152E-5 2.016810519038288E-5 22-23 0.0 2.319332096894031E-4 0.0 9.579849965431867E-5 2.016810519038288E-5 24-25 0.0 2.4705928858219026E-4 0.0 1.1092457854710584E-4 2.016810519038288E-5 26-27 0.0 2.52101314879786E-4 0.0 1.563028152254673E-4 2.016810519038288E-5 28-29 0.0 2.52101314879786E-4 0.0 3.630258934268918E-4 2.016810519038288E-5 30-31 0.0 2.9243752526055173E-4 0.0 0.0012504225218037384 2.016810519038288E-5 32-33 0.0 3.025215778557432E-4 0.0 0.003831939986172747 2.016810519038288E-5 34-35 0.0 3.630258934268918E-4 0.0 0.007426904736358495 2.016810519038288E-5 36-37 0.0 4.1344615640284904E-4 0.0 0.013356327662331063 2.016810519038288E-5 38-39 0.0 4.235302089980405E-4 0.0 0.02812946471428652 2.016810519038288E-5 40-41 0.0 4.840345245691891E-4 0.0 0.044334537234759164 2.016810519038288E-5 42-43 0.0 5.092446560571677E-4 0.0 0.05434800146178427 2.016810519038288E-5 44-45 0.0 5.798330242235078E-4 0.0 0.06650432686528754 2.016810519038288E-5 46-47 0.0 6.252112609018693E-4 0.0 0.07875140874214755 2.016810519038288E-5 48-49 0.0 6.352953134970607E-4 0.0 0.09008084183284513 2.016810519038288E-5 50-51 0.0 7.361358394489751E-4 0.0 0.1009514505304615 2.016810519038288E-5 52-53 0.0 7.361358394489751E-4 0.0 0.1265044398066766 2.5210131487978597E-5 54-55 0.0 7.411778657465708E-4 0.0 0.15729105237979607 3.0252157785574317E-5 56-57 0.0 7.56303944639358E-4 0.0 0.1888238848449597 3.0252157785574317E-5 58-59 0.0 7.56303944639358E-4 0.0 0.21857688202707204 3.0252157785574317E-5 60-61 0.0 7.56303944639358E-4 0.0 0.2305315263786715 3.0252157785574317E-5 62-63 0.0 7.613459709369537E-4 0.0 0.24508785629983035 3.0252157785574317E-5 64-65 0.0 8.067242076153152E-4 0.0 0.2506492113060784 3.0252157785574317E-5 66-67 0.0 8.168082602105066E-4 0.0 0.25520720307910494 3.0252157785574317E-5 68-69 0.0 8.420183916984852E-4 0.0 0.2598156151151074 3.0252157785574317E-5 70-71 0.0 8.621864968888681E-4 0.0 0.2641164635469566 3.0252157785574317E-5 72-73 0.0 8.672285231864638E-4 0.0 0.2674895791400481 4.033621038076576E-5 74-75 0.0 8.773125757816552E-4 0.0 0.2700257183677388 4.033621038076576E-5 76-77 0.0 8.974806809720382E-4 0.0 0.27265261406878616 4.033621038076576E-5 78-79 0.0 8.974806809720382E-4 0.0 0.2742963146418024 4.033621038076576E-5 80-81 0.0 8.974806809720382E-4 0.0 0.27476522308747875 4.033621038076576E-5 82-83 0.0 8.974806809720382E-4 0.0 0.27514337505979847 4.033621038076576E-5 84-85 0.0 8.974806809720382E-4 0.0 0.2753248880065119 4.033621038076576E-5 86-87 0.0 8.974806809720382E-4 0.0 0.2754307705587614 4.033621038076576E-5 88 0.0 9.88237154328761E-4 0.0 0.275435812585059 4.033621038076576E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12430 0.0 48.46826 1 GTATCAA 22100 0.0 36.647396 1 ATCAACG 26970 0.0 29.132568 3 TCAACGC 27090 0.0 29.019472 4 CAACGCA 27370 0.0 28.723175 5 TATCAAC 28720 0.0 27.643343 2 AACGCAG 28425 0.0 27.626839 6 ACGCAGA 31795 0.0 24.657976 7 CGCAGAG 32035 0.0 24.500349 8 GCAGAGT 38255 0.0 20.451551 9 AGAGTAC 35275 0.0 19.324158 10-11 GTACATG 25065 0.0 19.225292 1 GAGTACT 24635 0.0 18.879293 12-13 TACATGG 25110 0.0 18.485168 2 CAGAGTA 37895 0.0 18.022335 10-11 ACATGGG 25225 0.0 17.852636 3 AGTACTT 27105 0.0 17.477818 12-13 GTACTTT 28090 0.0 16.611631 14-15 CATGGGG 18145 0.0 16.291645 4 GTGGTAT 6230 0.0 14.914759 1 >>END_MODULE