##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138966_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10068075 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.59100672174174 33.0 33.0 33.0 33.0 33.0 2 32.607558843175084 33.0 33.0 33.0 33.0 33.0 3 32.59935687805265 33.0 33.0 33.0 33.0 33.0 4 36.5108186023644 37.0 37.0 37.0 37.0 37.0 5 36.53877995545325 37.0 37.0 37.0 37.0 37.0 6 36.528616940179724 37.0 37.0 37.0 37.0 37.0 7 36.50975633375794 37.0 37.0 37.0 37.0 37.0 8 36.494193378575346 37.0 37.0 37.0 37.0 37.0 9 36.52803281660099 37.0 37.0 37.0 37.0 37.0 10-11 36.485165237644736 37.0 37.0 37.0 37.0 37.0 12-13 36.42097794265537 37.0 37.0 37.0 37.0 37.0 14-15 38.48965671193351 40.0 37.0 40.0 37.0 40.0 16-17 38.45260131653767 40.0 37.0 40.0 37.0 40.0 18-19 38.466669497396474 40.0 37.0 40.0 37.0 40.0 20-21 38.465750941579444 40.0 37.0 40.0 37.0 40.0 22-23 38.46048692433403 40.0 37.0 40.0 37.0 40.0 24-25 38.45984052489308 40.0 37.0 40.0 37.0 40.0 26-27 38.32276843952935 40.0 37.0 40.0 37.0 40.0 28-29 38.25127447428011 40.0 37.0 40.0 37.0 40.0 30-31 38.21483175488386 40.0 37.0 40.0 37.0 40.0 32-33 38.141387723598044 40.0 37.0 40.0 35.0 40.0 34-35 38.11003477425342 40.0 37.0 40.0 33.0 40.0 36-37 38.07963996917062 40.0 37.0 40.0 33.0 40.0 38-39 38.03920679715625 40.0 37.0 40.0 33.0 40.0 40-41 38.01234444515481 40.0 37.0 40.0 33.0 40.0 42-43 37.92488851270447 40.0 37.0 40.0 33.0 40.0 44-45 37.8865818870837 40.0 37.0 40.0 33.0 40.0 46-47 37.858599796945974 40.0 37.0 40.0 33.0 40.0 48-49 37.84126689028794 40.0 37.0 40.0 33.0 40.0 50-51 37.78987241901747 40.0 37.0 40.0 33.0 40.0 52-53 37.70419787600184 40.0 37.0 40.0 33.0 40.0 54-55 37.51546388405802 40.0 37.0 40.0 33.0 40.0 56-57 37.35301032053128 40.0 37.0 40.0 33.0 40.0 58-59 37.301761611658435 40.0 37.0 40.0 33.0 40.0 60-61 37.181862124469845 37.0 37.0 40.0 33.0 40.0 62-63 37.01549548651025 37.0 37.0 40.0 33.0 40.0 64-65 36.881328739424944 37.0 37.0 40.0 33.0 40.0 66-67 36.67759720352534 37.0 37.0 40.0 33.0 40.0 68-69 36.471984740517115 37.0 37.0 40.0 33.0 40.0 70-71 36.2218649833907 37.0 37.0 40.0 33.0 40.0 72-73 36.013819365410654 37.0 37.0 37.0 33.0 40.0 74-75 35.832603207136074 37.0 35.0 37.0 33.0 40.0 76-77 34.05115964127155 35.0 33.0 37.0 27.0 37.0 78-79 35.25290137854792 37.0 33.0 37.0 33.0 37.0 80-81 35.296620054351784 37.0 33.0 37.0 33.0 37.0 82-83 35.16158963399869 37.0 33.0 37.0 33.0 37.0 84-85 34.99750767817645 37.0 33.0 37.0 33.0 37.0 86-87 34.86425249487061 37.0 33.0 37.0 33.0 37.0 88-89 34.77814816526325 37.0 33.0 37.0 33.0 37.0 90-91 34.686039166167205 37.0 33.0 37.0 33.0 37.0 92-93 34.60795190860482 37.0 33.0 37.0 33.0 37.0 94-95 34.59041404693133 37.0 33.0 37.0 33.0 37.0 96-97 34.58872923654597 37.0 33.0 37.0 33.0 37.0 98-99 34.58651769577267 37.0 33.0 37.0 33.0 37.0 100 34.59102671681732 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 3.0 19 10.0 20 72.0 21 356.0 22 1341.0 23 3991.0 24 8888.0 25 17754.0 26 31355.0 27 50127.0 28 74969.0 29 105654.0 30 144658.0 31 193786.0 32 259481.0 33 347691.0 34 478926.0 35 690350.0 36 1176554.0 37 2755114.0 38 3633501.0 39 93493.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.77736558378836 21.560169148521442 15.156700759579165 23.505764508111035 2 13.957653275328202 21.89543681388945 42.23962376124532 21.90728614953703 3 16.701921668243433 27.76307288136014 31.43008966460818 24.104915785788247 4 11.803686404799327 19.30414701916702 40.34402802919128 28.548138546842374 5 12.807850557330969 38.384845166528855 36.17207857510001 12.63522570104017 6 27.982442322136293 39.41156968055658 19.869122932548965 12.736865064758165 7 24.864236708606164 33.43975884168523 24.93780588642814 16.75819856328047 8 23.451275442425686 37.30101335160892 22.268457475733943 16.97925373023145 9 25.190058675566085 17.008037782793632 22.458662653983012 35.343240887657274 10-11 23.20380110800592 27.517915467331765 29.904404654532694 19.37387877012962 12-13 24.138439985121245 25.20382556891631 29.98982920715988 20.667905238802568 14-15 21.476727428568505 26.51302022661264 27.6791357968833 24.33111654793555 16-17 20.82905619991905 29.430635945798972 28.444325255820996 21.295982598460977 18-19 20.838387675896335 28.6733710267355 30.072888809429806 20.41535248793836 20-21 21.752419396291316 27.822929467828416 29.84449265620449 20.58015847967578 22-23 21.530439370905547 27.77643099489277 29.619187578513014 21.07394205568867 24-25 21.244238447848566 27.93254926201912 29.705077378622118 21.1181349115102 26-27 21.179896238457758 28.111402788274674 29.656034611694217 21.052666361573348 28-29 21.149382570045876 28.17455316754762 29.66698148741644 21.00908277499006 30-31 21.419481708474464 27.962544908679572 29.580185287282458 21.03778809556351 32-33 21.343829237565185 28.064445556317473 29.423758511808888 21.16796669430845 34-35 21.361197654887835 28.13953808929453 29.453724427745648 21.045539828071988 36-37 21.357584742909903 28.160170952570258 29.36376292824304 21.118481376276794 38-39 21.214248036027055 28.22812379677323 29.43414499378686 21.12348317341285 40-41 21.413164141482813 28.122697924066458 29.285074728411274 21.179063206039455 42-43 21.400029665111983 28.216033764365005 29.035640462298097 21.348296108224915 44-45 21.484507287335063 28.31644496857091 28.87643633876135 21.322611405332673 46-47 21.54720953070993 28.327110092525725 28.593676091874524 21.532004284889815 48-49 21.53240828741757 28.40784899799788 28.555709166245286 21.50403354833926 50-51 21.522152385066065 28.555709631244802 28.430936017911634 21.491201965777503 52-53 21.635970856543924 28.468989903268966 28.328078637841646 21.566960602345468 54-55 21.689234688517843 28.436638023577693 28.277582201354782 21.596545086549682 56-57 21.688847685724568 28.494664419008515 28.238219414618175 21.578268480648745 58-59 21.62102955289067 28.542897269400292 28.318293607772503 21.517779569936533 60-61 21.714601187775095 28.560257285129865 28.26506049301984 21.460081034075206 62-63 21.665285290797488 28.586095085516767 28.214363772612305 21.534255851073443 64-65 21.658272133669115 28.51690172888915 28.185059785641087 21.63976635180065 66-67 21.75745488106697 28.479871834877883 28.08176085053034 21.6809124335248 68-69 21.678576876793166 28.513475018891327 28.156409934074023 21.651538170241487 70-71 21.682968455914875 28.362610023667063 28.204155380540353 21.75026613987771 72-73 21.70950037820282 28.39411976249899 28.160217252128533 21.73616260716966 74-75 21.663607970189577 28.461077607590973 28.133452902020167 21.74186152019928 76-77 21.70771609431711 28.49066751355458 28.040169558209282 21.761446833919027 78-79 21.722463216291242 28.406341486095886 28.06405302198573 21.80714227562714 80-81 21.674658241490945 28.464388071291847 28.11124332587577 21.74971036134144 82-83 21.708544769483748 28.43914548436624 28.20431932887185 21.64799041727816 84-85 21.83266198742669 28.397719000586996 28.065707862362423 21.703911149623895 86-87 21.68509304105036 28.490037158194543 28.077422868080955 21.747446932674144 88-89 21.75558110078158 28.412186699258214 28.099547830223 21.732684369737207 90-91 21.805364435284876 28.426077012819846 28.103406136079258 21.66515241581602 92-93 21.80491019338961 28.452535320465728 28.061459441674565 21.6810950444701 94-95 21.628664186555977 28.535482047989607 28.098078668293486 21.737775097160934 96-97 21.700673733778157 28.605759342050668 28.18072073161008 21.512846192561096 98-99 22.77908308072672 30.519174474283833 28.450121884851203 18.251620560138246 100 21.727682441951217 31.619985396280033 22.286222276895558 24.366109884873193 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1612.0 1 1608.5 2 2814.5 3 4305.5 4 6123.5 5 10217.0 6 13337.5 7 14777.5 8 14980.0 9 13987.0 10 12644.5 11 11383.5 12 12484.0 13 16745.5 14 26692.0 15 40603.0 16 51589.0 17 57168.0 18 57978.0 19 55180.0 20 50661.0 21 46552.0 22 45723.0 23 50132.0 24 60082.5 25 75435.0 26 95718.5 27 119168.0 28 144486.5 29 173123.0 30 200710.0 31 225604.5 32 252316.0 33 278160.0 34 303065.0 35 324862.0 36 345395.5 37 365387.5 38 378504.5 39 386413.0 40 393522.0 41 399748.0 42 402194.0 43 403682.0 44 404499.0 45 404688.5 46 401869.5 47 396455.0 48 388600.5 49 376612.5 50 364094.5 51 347679.0 52 327731.5 53 305624.0 54 279646.0 55 251270.5 56 223950.0 57 198749.0 58 174525.0 59 148797.0 60 120790.0 61 95650.5 62 74932.0 63 57314.5 64 42573.5 65 31630.5 66 23848.0 67 17748.0 68 13212.5 69 9466.0 70 6599.0 71 4716.5 72 3310.5 73 2286.5 74 1487.5 75 951.5 76 625.0 77 402.5 78 271.5 79 179.0 80 127.5 81 104.5 82 85.5 83 66.5 84 48.0 85 32.0 86 23.0 87 17.5 88 12.5 89 11.0 90 9.0 91 6.0 92 5.5 93 4.0 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 9.932385287157673E-6 7 0.0 8 0.0 9 0.0 10-11 0.0016736069208860681 12-13 2.979715586147302E-4 14-15 0.007146351214109947 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 123.0 20-21 515.0 22-23 1188.0 24-25 2825.0 26-27 3919.0 28-29 6572.0 30-31 15302.0 32-33 19817.0 34-35 27575.0 36-37 39017.0 38-39 47409.0 40-41 49781.0 42-43 60593.0 44-45 74402.0 46-47 72446.0 48-49 63800.0 50-51 56334.0 52-53 54679.0 54-55 58841.0 56-57 62370.0 58-59 62033.0 60-61 61210.0 62-63 60403.0 64-65 64268.0 66-67 68794.0 68-69 68250.0 70-71 67875.0 72-73 65402.0 74-75 68479.0 76-77 67803.0 78-79 72641.0 80-81 74664.0 82-83 73479.0 84-85 74740.0 86-87 79141.0 88-89 85610.0 90-91 89638.0 92-93 95901.0 94-95 118920.0 96-97 339193.0 98-99 633622.0 100-101 6958501.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.4253878043184 #Duplication Level Percentage of deduplicated Percentage of total 1 86.84153841829242 70.71105943233076 2 8.812536069625871 14.35128334017661 3 2.369129893722092 5.78721961065375 4 0.9467172985487727 3.0834729270156203 5 0.4245689142908766 1.7285344247896524 6 0.21287043848395057 1.0399834803378587 7 0.1306809722945089 0.7448524193408043 8 0.07650136110021338 0.4983322396114458 9 0.05175949434078334 0.37930832093283373 >10 0.13211685847435997 1.5459090460801612 >50 0.0012642426175353187 0.06569209369698309 >100 2.9512444087181113E-4 0.04865181961278784 >500 2.0913767766620473E-5 0.015700845420804972 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.932385287157675E-6 9.932385287157675E-6 2 0.0 2.9797155861473023E-5 0.0 2.9797155861473023E-5 9.932385287157675E-6 3 0.0 2.9797155861473023E-5 0.0 2.9797155861473023E-5 9.932385287157675E-6 4 0.0 4.966192643578837E-5 0.0 3.97295411486307E-5 1.986477057431535E-5 5 0.0 4.966192643578837E-5 0.0 7.94590822972614E-5 1.986477057431535E-5 6 0.0 4.966192643578837E-5 0.0 7.94590822972614E-5 2.9797155861473023E-5 7 0.0 4.966192643578837E-5 0.0 7.94590822972614E-5 2.9797155861473023E-5 8 0.0 6.952669701010373E-5 0.0 7.94590822972614E-5 2.9797155861473023E-5 9 0.0 1.887153204559958E-4 0.0 7.94590822972614E-5 2.9797155861473023E-5 10-11 0.0 1.887153204559958E-4 0.0 8.939146758441907E-5 2.9797155861473023E-5 12-13 0.0 1.986477057431535E-4 0.0 9.932385287157674E-5 2.9797155861473023E-5 14-15 0.0 2.4830963217894184E-4 0.0 9.932385287157674E-5 4.4695733792209536E-5 16-17 0.0 2.5824201746609953E-4 0.0 1.0429004551515557E-4 4.966192643578837E-5 18-19 0.0 2.7314059539683606E-4 0.0 1.0925623815873442E-4 6.952669701010373E-5 20-21 0.0 2.8803917332757253E-4 0.0 1.2912100873304976E-4 6.952669701010373E-5 22-23 0.0 3.476334850505186E-4 0.0 1.3905339402020745E-4 6.952669701010373E-5 24-25 0.0 4.3205875999135883E-4 0.0 1.3905339402020745E-4 6.952669701010373E-5 26-27 0.0 4.56889723209253E-4 0.0 1.5395197195094395E-4 6.952669701010373E-5 28-29 0.0 4.56889723209253E-4 0.0 2.2347866896104768E-4 6.952669701010373E-5 30-31 0.0 5.164840349321991E-4 0.0 5.164840349321991E-4 6.952669701010373E-5 32-33 0.0 5.164840349321991E-4 0.0 0.001618978801806701 6.952669701010373E-5 34-35 0.0 5.860107319423028E-4 0.0 0.0029151550817807775 7.94590822972614E-5 36-37 0.0 6.555374289524065E-4 0.0 0.004991023606796732 7.94590822972614E-5 38-39 0.0 6.903007774574584E-4 0.0 0.008209116439835818 7.94590822972614E-5 40-41 0.0 7.548612818239832E-4 0.0 0.011601026015400164 7.94590822972614E-5 42-43 0.0 7.747260523982986E-4 0.0 0.014843949811657143 7.94590822972614E-5 44-45 0.0 8.442527494084023E-4 0.0 0.01879207296330232 8.442527494084023E-5 46-47 0.0 8.939146758441907E-4 0.0 0.02276502707816539 8.939146758441907E-5 48-49 0.0 8.939146758441907E-4 0.0 0.026534367294641724 9.932385287157674E-5 50-51 0.0 9.634413728542944E-4 0.0 0.030472558060999744 9.932385287157674E-5 52-53 0.0 9.634413728542944E-4 0.0 0.03438591786413987 1.0925623815873442E-4 54-55 0.0 9.634413728542944E-4 0.0 0.03870650546405345 1.2415481608947092E-4 56-57 0.0 9.634413728542944E-4 0.0 0.04319594361384872 1.2912100873304976E-4 58-59 0.0 9.833061434286097E-4 0.0 0.04762082125927747 1.2912100873304976E-4 60-61 0.0 0.0010180694919336617 0.0 0.05203080032677548 1.2912100873304976E-4 62-63 0.0 0.00106773141836945 0.0 0.056480508935422113 1.2912100873304976E-4 64-65 0.0 0.0011918862344589209 0.0 0.06102954139694033 1.2912100873304976E-4 66-67 0.0 0.0012117510050332363 0.0 0.06563816817018149 1.2912100873304976E-4 68-69 0.0 0.001251480546181867 0.0 0.07027659209928414 1.2912100873304976E-4 70-71 0.0 0.0012862438946869188 0.0 0.07423961382886003 1.2912100873304976E-4 72-73 0.0 0.0013011424726176552 0.0 0.07745770666189912 1.2912100873304976E-4 74-75 0.0 0.0013508043990534437 0.0 0.08003019445127296 1.2912100873304976E-4 76-77 0.0 0.001460060637212178 0.0 0.08247356123191374 1.2912100873304976E-4 78-79 9.932385287157675E-6 0.0014997901783608087 0.0 0.08415213434544339 1.2912100873304976E-4 80-81 9.932385287157675E-6 0.0014997901783608087 0.0 0.08467855076566275 1.340872013766286E-4 82-83 9.932385287157675E-6 0.0015047563710043877 0.0 0.08515033906680274 1.3905339402020745E-4 84-85 9.932385287157675E-6 0.001524621141578703 0.0 0.085324155809328 1.3905339402020745E-4 86-87 9.932385287157675E-6 0.001589181645945228 0.0 0.08540361489162526 1.3905339402020745E-4 88 9.932385287157675E-6 0.0017183026546782776 0.0 0.08540858108426884 1.3905339402020745E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12275 0.0 51.37286 1 GTATCAA 22315 0.0 37.049957 1 ATCAACG 27045 0.0 29.99245 3 TCAACGC 27215 0.0 29.709421 4 CAACGCA 27550 0.0 29.301775 5 AACGCAG 28385 0.0 28.409225 6 TATCAAC 28765 0.0 28.274498 2 ACGCAGA 32175 0.0 25.076422 7 CGCAGAG 32655 0.0 24.654902 8 GTACATG 28250 0.0 21.047077 1 TACATGG 28030 0.0 20.747766 2 GCAGAGT 38670 0.0 20.677082 9 ACATGGG 28040 0.0 20.121252 3 GAGTACT 23955 0.0 19.58801 12-13 AGAGTAC 35465 0.0 19.277662 10-11 CAGAGTA 38505 0.0 18.409536 10-11 CATGGGG 20625 0.0 17.2127 4 AGTACTT 26485 0.0 16.962944 12-13 GTACTTT 27750 0.0 16.878439 14-15 GTGGTAT 6020 0.0 15.57209 1 >>END_MODULE