##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138963_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6499837 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45881612108119 34.0 31.0 34.0 31.0 34.0 2 32.5891966213922 34.0 31.0 34.0 31.0 34.0 3 32.63963419390363 34.0 31.0 34.0 31.0 34.0 4 36.16742989093419 37.0 35.0 37.0 35.0 37.0 5 36.09212815644454 37.0 35.0 37.0 35.0 37.0 6 36.107846089063464 37.0 35.0 37.0 35.0 37.0 7 36.062498028796725 37.0 35.0 37.0 35.0 37.0 8 36.05559139406111 37.0 35.0 37.0 35.0 37.0 9 37.7810806640228 39.0 38.0 39.0 35.0 39.0 10-11 37.7145557650138 39.0 38.0 39.0 35.0 39.0 12-13 37.704113426229 39.0 38.0 39.0 35.0 39.0 14-15 39.135637093668656 41.0 39.0 41.0 36.0 41.0 16-17 39.11119563459822 41.0 39.0 41.0 36.0 41.0 18-19 39.11181734249644 41.0 38.5 41.0 36.0 41.0 20-21 39.09343413444974 41.0 39.0 41.0 35.0 41.0 22-23 39.08254652534917 41.0 39.0 41.0 35.0 41.0 24-25 39.04698749033311 41.0 39.0 41.0 35.0 41.0 26-27 38.99591738169299 41.0 39.0 41.0 35.0 41.0 28-29 38.93919575156089 40.5 38.5 41.0 35.0 41.0 30-31 38.85912532528189 40.0 38.0 41.0 35.0 41.0 32-33 38.768702830019116 40.0 38.0 41.0 35.0 41.0 34-35 38.69098233485688 40.0 38.0 41.0 34.0 41.0 36-37 38.67001006245225 40.0 38.0 41.0 34.0 41.0 38-39 38.61711007395297 40.0 38.0 41.0 34.0 41.0 40-41 38.608918936511685 40.0 38.0 41.0 34.0 41.0 42-43 38.559585251510555 40.0 38.0 41.0 34.0 41.0 44-45 38.47624446058725 40.0 38.0 41.0 34.0 41.0 46-47 38.429393324828 40.0 38.0 41.0 33.5 41.0 48-49 38.38345852009958 40.0 38.0 41.0 33.0 41.0 50-51 38.32792833986973 40.0 38.0 41.0 33.0 41.0 52-53 38.207032027678366 40.0 37.5 41.0 33.0 41.0 54-55 38.089769665428506 40.0 37.0 41.0 33.0 41.0 56-57 37.978942824716256 40.0 37.0 41.0 33.0 41.0 58-59 37.86806249130953 40.0 37.0 41.0 33.0 41.0 60-61 37.74274349637814 40.0 36.0 41.0 33.0 41.0 62-63 37.54371504359173 39.0 36.0 41.0 32.0 41.0 64-65 37.34831320092279 39.0 35.5 41.0 32.0 41.0 66-67 37.12666376311602 39.0 35.0 41.0 32.0 41.0 68-69 36.8006634134493 38.0 35.0 40.5 31.5 41.0 70-71 36.47443681975146 37.0 35.0 40.0 31.0 41.0 72-73 36.16756409751156 37.0 35.0 39.5 31.0 41.0 74-75 35.898332464572974 36.5 35.0 39.0 31.0 41.0 76-77 35.60140285404493 36.0 35.0 39.0 31.0 40.5 78-79 35.31405826047231 35.5 34.5 37.5 31.0 39.5 80-81 35.02385856331518 35.0 34.0 37.0 31.0 39.0 82-83 34.7141278354284 35.0 34.0 37.0 31.0 39.0 84-85 34.470276517368774 35.0 34.0 36.0 31.0 37.5 86-87 34.29843141372231 35.0 34.0 36.0 31.0 37.0 88-89 34.14772658587282 35.0 34.0 36.0 31.0 37.0 90-91 34.00696934893425 35.0 34.0 35.0 31.0 36.0 92-93 33.94582700711334 35.0 34.0 35.0 31.0 36.0 94-95 33.887171217559334 35.0 34.0 35.0 31.0 36.0 96-97 33.874847735465295 35.0 34.0 35.0 31.0 36.0 98-99 34.0118401215755 35.0 34.0 35.0 31.0 36.0 100 31.31062615399352 33.0 29.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 12.0 19 28.0 20 75.0 21 170.0 22 747.0 23 2369.0 24 6426.0 25 13579.0 26 25201.0 27 40558.0 28 59838.0 29 81895.0 30 106829.0 31 134525.0 32 170045.0 33 214808.0 34 284008.0 35 391867.0 36 578574.0 37 1070591.0 38 1811617.0 39 1370224.0 40 135851.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.94615557282437 21.38073616307609 14.862772712608024 23.81033555149152 2 14.765742641315166 21.74695980319708 41.1696935932119 22.31760396227585 3 17.70886411693609 26.576396530121432 31.257707901013937 24.457031451928547 4 12.549853173241113 18.808656278611295 39.1298581795205 29.51163236862709 5 12.814123508382142 38.184109360563205 36.17128785157022 12.830479279484432 6 29.17231988306343 38.82569527253145 18.8932415278686 13.108743316536522 7 25.57139509806169 33.192416979071936 23.747164736592623 17.489023186273748 8 23.88232197207407 37.20600993532607 21.58734134409832 17.32432674850154 9 25.15987708614847 16.86186899763794 21.70662125834848 36.27163265786511 10-11 23.670539329075275 27.052617489520888 29.59324352079707 19.683599660606767 12-13 24.499433524168918 24.669768591084452 29.566469061680937 21.26432882306569 14-15 21.66883736229365 26.202020620057137 27.11792827404197 25.011213743607243 16-17 21.280024480674157 29.222512435342452 27.888429542905875 21.609033541077515 18-19 21.307393048789617 28.34887579561414 29.542501820640087 20.801229334956158 20-21 22.051746387695953 27.49682955771513 29.453606919007076 20.997817135581844 22-23 21.76850723122533 27.512278756942628 29.291048163749178 21.42816584808287 24-25 21.629097655725115 27.689269948162043 29.33866781427732 21.34296458183552 26-27 21.585142999248173 27.850185801050248 29.28951356811544 21.27515763158614 28-29 21.531485618246485 27.85485001134454 29.319978751623193 21.293685618785783 30-31 21.896856690426354 27.62257142312736 29.248307084637016 21.232264801809272 32-33 21.64387773226151 27.763868239804097 29.18461290901523 21.407641118919166 34-35 21.75961017278873 27.68602688927851 29.20743397054174 21.34692896739102 36-37 21.650085824224945 27.778490144898587 29.19186719454888 21.379556836327588 38-39 21.506745454737803 27.77245810710366 29.286593371975066 21.434203066183468 40-41 21.827120409540044 27.63966211984124 29.13613366794384 21.39708380267487 42-43 21.794681260306778 27.687419212860714 28.951767481417516 21.566132045414992 44-45 21.76951677628113 27.841515792374967 28.79173038086703 21.59723705047687 46-47 21.918562538897383 27.801530078349142 28.45823523841819 21.821672144335285 48-49 21.851657697507743 27.866715751548238 28.45713986862303 21.824486682320984 50-51 21.734152638035514 28.007951687136917 28.427017733192145 21.83087794163542 52-53 21.853889271891376 27.989389765337545 28.39487686352441 21.761844099246673 54-55 21.892272660776868 27.88317751847132 28.37664983149767 21.847899989254145 56-57 21.92199921243024 27.960692035591133 28.228588917267043 21.88871983471158 58-59 21.76570798250796 28.087743443016183 28.449997868090364 21.69655070638549 60-61 21.894553708636277 28.23586876570266 28.226850418777676 21.642727106883385 62-63 21.751409319170424 28.34036927304922 28.18894955060003 21.719271857180324 64-65 21.687433164255385 28.307804734229215 28.169029742825508 21.835732358689892 66-67 21.76091923227308 28.37107326200592 28.004936214024355 21.86307129169664 68-69 21.7610381214992 28.274783055035396 28.0439722615413 21.9202065619241 70-71 21.774847993187866 27.948363753401136 28.200913461877875 22.075874791533128 72-73 21.8807539176617 27.936470207418022 28.133495784512665 22.049280090407613 74-75 21.790827251447315 28.098077652204168 28.05742645271642 22.053668643632097 76-77 21.921011178344134 28.036266951591287 27.936822476096406 22.10589939396817 78-79 21.897291110176695 28.090693622208978 27.948230929094986 22.06378433851934 80-81 21.88754361254128 28.06545647593927 27.950804814298458 22.096195097220996 82-83 21.916342589491187 28.077703787201436 28.026793047407107 21.979160575900273 84-85 22.046849945520243 28.103345300953265 27.9556724921753 21.89413226135119 86-87 21.871645709796194 28.18696185693208 28.039032173317736 21.902360259953987 88-89 21.917701948395376 28.168834336198916 28.01024226240607 21.903221452999638 90-91 21.95870258195485 28.174919899885047 28.061770844373424 21.80460667378668 92-93 21.99746105445162 28.11524822676696 28.053155461644657 21.834135257136765 94-95 21.87011865273001 28.148282622979583 28.110880544429534 21.870718179860873 96-97 21.872016547355493 28.25978055362539 28.238169879719255 21.63003301929986 98-99 22.799835622502236 30.17669876131828 28.51821533405215 18.50525028212733 100 21.882702553414322 31.208151656503947 22.01949850462004 24.889647285461695 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1475.0 1 1229.5 2 1500.5 3 2041.5 4 2507.5 5 3999.5 6 5415.0 7 6810.0 8 7787.0 9 7570.0 10 6457.0 11 5134.0 12 5288.0 13 7266.0 14 12741.0 15 20609.5 16 27037.0 17 30695.5 18 31969.0 19 31497.5 20 29745.0 21 27588.5 22 27215.0 23 30346.0 24 36598.5 25 45589.5 26 57717.0 27 71292.5 28 84985.0 29 100444.0 30 116133.0 31 132347.0 32 149880.0 33 167030.5 34 183671.0 35 199451.0 36 217216.5 37 232838.5 38 242354.0 39 250225.5 40 259255.5 41 266818.5 42 270574.0 43 274973.5 44 281058.0 45 286765.5 46 286336.0 47 282310.5 48 277099.5 49 267665.0 50 257948.5 51 246483.5 52 232062.5 53 216177.0 54 199643.0 55 182051.5 56 164537.5 57 147402.5 58 129777.5 59 112090.5 60 92945.0 61 75187.5 62 60283.5 63 46837.0 64 35606.5 65 27199.0 66 21034.0 67 16511.5 68 12924.5 69 9851.0 70 7575.0 71 5873.0 72 4593.5 73 3525.0 74 2659.0 75 1972.5 76 1468.0 77 1123.0 78 842.5 79 631.0 80 479.5 81 355.0 82 269.0 83 196.0 84 139.5 85 100.0 86 73.5 87 59.0 88 41.5 89 30.5 90 21.5 91 12.0 92 7.5 93 3.5 94 1.5 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005230900405656326 3 2.0000501551038896E-4 4 0.0 5 0.00926177071825032 6 0.009030995700353718 7 0.0 8 0.0 9 0.0 10-11 3.077000238621368E-5 12-13 1.538500119310684E-5 14-15 7.69250059655342E-6 16-17 2.4616001908970946E-4 18-19 9.615625745691777E-4 20-21 0.0 22-23 1.231028693740065E-4 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 3.102631962693953E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 2.3829544409294983E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.004467596080516962 52-53 4.9830439472086356E-5 54-55 1.6738085286905008E-5 56-57 0.0 58-59 8.510616568638549E-6 60-61 7.730005674683055E-5 62-63 8.756016293472538E-4 64-65 0.0012255258118495742 66-67 0.0012387276886341159 68-69 0.007077827921091614 70-71 8.145822532576049E-4 72-73 4.666012327055626E-4 74-75 4.345231007272622E-4 76-77 1.2150156115486673E-4 78-79 0.0 80-81 8.608910949807752E-5 82-83 0.0 84-85 2.9387615001084403E-5 86-87 1.0909256801921617E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 191.0 20-21 709.0 22-23 1451.0 24-25 2486.0 26-27 3778.0 28-29 6239.0 30-31 14541.0 32-33 18531.0 34-35 25267.0 36-37 36543.0 38-39 40395.0 40-41 43196.0 42-43 51313.0 44-45 61286.0 46-47 61301.0 48-49 54165.0 50-51 47039.0 52-53 44912.0 54-55 47773.0 56-57 50531.0 58-59 52783.0 60-61 54416.0 62-63 54572.0 64-65 59748.0 66-67 63016.0 68-69 63878.0 70-71 60680.0 72-73 56564.0 74-75 57938.0 76-77 60153.0 78-79 61496.0 80-81 62801.0 82-83 60795.0 84-85 61698.0 86-87 65034.0 88-89 68478.0 90-91 71798.0 92-93 76094.0 94-95 96673.0 96-97 232608.0 98-99 511178.0 100-101 3935789.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.3045462226454 #Duplication Level Percentage of deduplicated Percentage of total 1 90.33443126612521 78.86606529969812 2 7.179357947352144 12.535811755270437 3 1.546485124549214 4.050455461165211 4 0.49005262456065546 1.7113528804993776 5 0.1986208411114981 0.8670251201799749 6 0.09036430192415013 0.47335286245284297 7 0.055548129510204915 0.33947229682836244 8 0.032852605691157714 0.22945454656784176 9 0.016549921968672755 0.13003950847456486 >10 0.05471295195195882 0.6851931504148665 >50 6.913401627862643E-4 0.03897443094712483 >100 3.08257379582978E-4 0.05594785394442465 >500 2.4687712759088427E-5 0.016854833556910524 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.538500119310684E-5 0.0 0.0 0.0 3 0.0 1.538500119310684E-5 0.0 0.0 0.0 4 0.0 3.077000238621368E-5 0.0 0.0 0.0 5 0.0 3.077000238621368E-5 0.0 0.0 0.0 6 0.0 3.077000238621368E-5 0.0 0.0 1.538500119310684E-5 7 0.0 3.077000238621368E-5 0.0 3.077000238621368E-5 3.077000238621368E-5 8 0.0 4.615500357932053E-5 0.0 3.077000238621368E-5 4.615500357932053E-5 9 0.0 1.2308000954485473E-4 0.0 3.077000238621368E-5 7.692500596553422E-5 10-11 0.0 1.2308000954485473E-4 0.0 3.077000238621368E-5 7.692500596553422E-5 12-13 0.0 1.2308000954485473E-4 0.0 3.077000238621368E-5 7.692500596553422E-5 14-15 0.0 1.6923501312417528E-4 0.0 3.077000238621368E-5 7.692500596553422E-5 16-17 0.0 1.8462001431728212E-4 0.0 3.077000238621368E-5 9.231000715864106E-5 18-19 0.0 1.9231251491383554E-4 0.0 5.3847504175873943E-5 1.076950083517479E-4 20-21 0.0 2.0000501551038896E-4 0.0 9.231000715864106E-5 1.2308000954485473E-4 22-23 0.0 2.3077501789660264E-4 0.0 1.3846501073796157E-4 1.46157511334515E-4 24-25 0.0 2.4616001908970946E-4 0.0 1.8462001431728212E-4 1.8462001431728212E-4 26-27 0.0 2.4616001908970946E-4 0.0 3.846250298276711E-4 1.9231251491383554E-4 28-29 0.0 2.4616001908970946E-4 0.0 0.0010615650823243721 2.0769751610694238E-4 30-31 0.0 2.615450202828163E-4 0.0 0.0034231627654662724 2.153900167034958E-4 32-33 0.0 2.769300214759232E-4 0.0 0.009584855743305563 2.153900167034958E-4 34-35 0.0 3.615475280380108E-4 0.0 0.018946628969311076 2.3077501789660264E-4 36-37 0.0 4.307800334069916E-4 0.0 0.03287005504907277 2.4616001908970946E-4 38-39 0.0 4.4616503460009844E-4 0.0 0.06687090768583889 2.6923752087936977E-4 40-41 0.0 4.769350369863121E-4 0.0 0.10200255791029836 2.769300214759232E-4 42-43 0.0 5.000125387759724E-4 0.0 0.12534929722083799 2.769300214759232E-4 44-45 0.0 5.461675423552929E-4 0.0 0.15721163469176228 2.9231502266903003E-4 46-47 0.0 5.692450441449532E-4 0.0 0.18855857462271747 3.077000238621369E-4 48-49 0.0 5.692450441449532E-4 0.0 0.21290533901080905 3.230850250552437E-4 50-51 0.0 6.154000477242737E-4 0.0 0.2365982408481936 3.230850250552437E-4 52-53 0.0 6.154000477242737E-4 0.0 0.3101923940554202 3.538550274414574E-4 54-55 0.0 6.154000477242737E-4 0.0 0.39494836562824576 3.923175304242245E-4 56-57 0.0 6.615550513035943E-4 0.0 0.5149513749344792 4.0770253161733134E-4 58-59 0.0 6.692475519001477E-4 0.0 0.5682219415656116 4.1539503221388476E-4 60-61 0.0 7.384800572691285E-4 0.0 0.5871224155313433 4.4616503460009844E-4 62-63 0.0 7.538650584622353E-4 0.0 0.5992765664738977 4.769350369863121E-4 64-65 0.0 8.7694506800709E-4 0.0 0.6056613419690371 4.769350369863121E-4 66-67 0.0 8.923300692001969E-4 0.0 0.6115076424224177 4.8462753758286555E-4 68-69 0.0 9.077150703933037E-4 0.0 0.6176385653978708 4.923200381794189E-4 70-71 0.0 9.231000715864106E-4 0.0 0.6224079157677338 5.000125387759724E-4 72-73 1.538500119310684E-5 9.384850727795174E-4 0.0 0.6267234086024003 6.000150465311669E-4 74-75 1.538500119310684E-5 9.384850727795174E-4 0.0 0.6301850338708495 6.154000477242737E-4 76-77 1.538500119310684E-5 9.538700739726242E-4 0.0 0.6333004966124536 6.230925483208271E-4 78-79 1.538500119310684E-5 9.538700739726242E-4 0.0 0.6359159468152817 6.307850489173806E-4 80-81 1.538500119310684E-5 9.538700739726242E-4 0.0 0.6367621218809025 6.538625507070408E-4 82-83 1.538500119310684E-5 9.538700739726242E-4 0.0 0.6373929069298199 6.92325053689808E-4 84-85 1.538500119310684E-5 9.615625745691776E-4 0.0 0.6376006044459268 7.077100548829148E-4 86-87 1.538500119310684E-5 9.846400763588378E-4 0.0 0.6376929144530855 7.230950560760216E-4 88 1.538500119310684E-5 0.0010615650823243721 0.0 0.6376929144530855 7.384800572691285E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7740 0.0 49.489754 1 GTATCAA 13840 0.0 34.909115 1 ATCAACG 16515 0.0 28.512274 3 TCAACGC 16580 0.0 28.400497 4 CAACGCA 17085 0.0 27.585749 5 TATCAAC 17435 0.0 27.420378 2 AACGCAG 17665 0.0 26.749886 6 ACGCAGA 20250 0.0 23.290932 7 CGCAGAG 20620 0.0 22.83205 8 GTGGTAT 3750 0.0 19.483358 1 GCAGAGT 24400 0.0 19.31226 9 TGGTATC 3425 0.0 19.23592 2 GAGTACT 15570 0.0 18.469023 12-13 AGAGTAC 21925 0.0 18.132086 10-11 GTACATG 16075 0.0 18.049065 1 CAGAGTA 23700 0.0 17.745085 10-11 TACATGG 16095 0.0 17.606802 2 ACATGGG 16140 0.0 16.7722 3 GTACTTT 17670 0.0 16.358837 14-15 AGTACTT 17015 0.0 16.267702 12-13 >>END_MODULE