##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138961_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5686030 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.47633814805761 34.0 31.0 34.0 31.0 34.0 2 32.60365140528629 34.0 31.0 34.0 31.0 34.0 3 32.65702520035948 34.0 31.0 34.0 31.0 34.0 4 36.17720114033869 37.0 35.0 37.0 35.0 37.0 5 36.101011953858844 37.0 35.0 37.0 35.0 37.0 6 36.11769951970004 37.0 36.0 37.0 35.0 37.0 7 36.068689753659406 37.0 35.0 37.0 35.0 37.0 8 36.06296273498381 37.0 35.0 37.0 35.0 37.0 9 37.79621475792425 39.0 38.0 39.0 35.0 39.0 10-11 37.726360307631154 39.0 38.0 39.0 35.0 39.0 12-13 37.712830568955845 39.0 38.0 39.0 35.0 39.0 14-15 39.14483295023065 41.0 39.0 41.0 36.0 41.0 16-17 39.120002268718245 41.0 39.0 41.0 36.0 41.0 18-19 39.118533493491945 41.0 38.5 41.0 36.0 41.0 20-21 39.106647186150894 41.0 39.0 41.0 35.5 41.0 22-23 39.09366717215004 41.0 39.0 41.0 35.0 41.0 24-25 39.05302128796268 41.0 39.0 41.0 35.0 41.0 26-27 38.99679924156546 41.0 39.0 41.0 35.0 41.0 28-29 38.93891362602365 41.0 38.5 41.0 35.0 41.0 30-31 38.849290553991864 40.0 38.0 41.0 35.0 41.0 32-33 38.7550068382392 40.0 38.0 41.0 35.0 41.0 34-35 38.672864706955785 40.0 38.0 41.0 34.0 41.0 36-37 38.64295916192425 40.0 38.0 41.0 34.0 41.0 38-39 38.59022253079365 40.0 38.0 41.0 34.0 41.0 40-41 38.59122623857824 40.0 38.0 41.0 34.0 41.0 42-43 38.54404980348774 40.0 38.0 41.0 34.0 41.0 44-45 38.45985994264373 40.0 38.0 41.0 33.5 41.0 46-47 38.4035224109648 40.0 38.0 41.0 33.0 41.0 48-49 38.347855430075654 40.0 38.0 41.0 33.0 41.0 50-51 38.26939139608329 40.0 38.0 41.0 33.0 41.0 52-53 38.14340463811883 40.0 37.0 41.0 33.0 41.0 54-55 38.03524990242319 40.0 37.0 41.0 33.0 41.0 56-57 37.91503579934255 40.0 37.0 41.0 33.0 41.0 58-59 37.8071298082818 40.0 36.0 41.0 33.0 41.0 60-61 37.67130506597917 39.5 36.0 41.0 32.5 41.0 62-63 37.473511200265676 39.0 35.5 41.0 32.0 41.0 64-65 37.28187447457648 39.0 35.0 41.0 32.0 41.0 66-67 37.05353760751365 39.0 35.0 41.0 32.0 41.0 68-69 36.72783509034407 38.0 35.0 40.5 31.5 41.0 70-71 36.40031356891631 37.0 35.0 40.0 31.0 41.0 72-73 36.099464957083015 37.0 35.0 39.0 31.0 41.0 74-75 35.82359991403392 36.0 35.0 39.0 31.0 41.0 76-77 35.51611576191709 36.0 35.0 39.0 31.0 40.5 78-79 35.223987091037124 35.5 34.0 37.5 31.0 39.5 80-81 34.92082064263532 35.0 34.0 37.0 31.0 39.0 82-83 34.60966716058165 35.0 34.0 36.5 31.0 39.0 84-85 34.38982219585006 35.0 34.0 36.0 31.0 37.0 86-87 34.221411337936075 35.0 34.0 36.0 31.0 37.0 88-89 34.074697236342416 35.0 34.0 35.5 31.0 37.0 90-91 33.94518355785982 35.0 34.0 35.0 31.0 36.0 92-93 33.884363294744425 35.0 34.0 35.0 31.0 36.0 94-95 33.810654418844265 35.0 34.0 35.0 31.0 36.0 96-97 33.8018023043693 35.0 34.0 35.0 31.0 36.0 98-99 33.95616715228361 35.0 34.0 35.0 31.0 36.0 100 31.108816964122735 33.0 29.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 10.0 19 29.0 20 57.0 21 159.0 22 676.0 23 2285.0 24 6008.0 25 12439.0 26 23185.0 27 37025.0 28 54203.0 29 73932.0 30 96401.0 31 120536.0 32 150888.0 33 190242.0 34 250859.0 35 348129.0 36 513638.0 37 960225.0 38 1606257.0 39 1131064.0 40 107781.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 40.59498454985289 21.056026788462248 14.451629695938994 23.89735896574587 2 14.843807023631781 21.52035698035648 41.257008163123885 22.378827832887858 3 17.849093038716006 26.618284845990694 31.010144178177356 24.522477937115944 4 12.401112903027244 18.842672303874583 38.41791197021472 30.33830282288345 5 12.764324322612996 38.4342801241125 35.9050332891448 12.896362264129705 6 29.318306936004433 38.45517144339598 18.804196603670707 13.422325016928882 7 25.985441511916047 33.04117283939761 23.15346559902076 17.819920049665583 8 24.30803214193383 36.96864068603226 21.356464879713965 17.366862292319947 9 25.401730205433314 16.525431628042764 21.102210153657296 36.97062801286663 10-11 23.870878899350892 26.955607751740164 29.275144954037764 19.89836839487118 12-13 24.832556707628758 24.475752368150747 29.238961915340045 21.45272900888045 14-15 21.893018669706162 25.974662987590904 26.657283434776414 25.475034907926524 16-17 21.494104394729877 29.2152412542 27.351783278798948 21.938871072271176 18-19 21.60461985769901 28.133419838564215 29.085024277274474 21.1769360264623 20-21 22.40427821519309 27.216962519624772 28.97756147819398 21.401197786988156 22-23 22.069002578495837 27.4377832446936 28.81399833787856 21.679215838932006 24-25 21.97672807441597 27.521847396589138 28.933083426769706 21.568341102225187 26-27 21.895425900811244 27.61891375540807 28.959079482198174 21.526580861582513 28-29 21.838669835001216 27.482140244692456 29.02262093279849 21.65656898750784 30-31 21.888288370936028 27.104849728884815 29.232215205561502 21.774646694617655 32-33 21.658776063842772 27.503176112099155 29.006288188966906 21.831759635091167 34-35 21.970190678045086 27.41946879843664 29.000224214331148 21.610116309187124 36-37 21.83018354767254 27.419588343484243 29.142047607022498 21.608180501820723 38-39 21.702676341946457 27.384858538671164 29.046895979263365 21.865569140119014 40-41 21.98678221815158 27.238419151919885 29.136153760602262 21.638644869326274 42-43 22.008674301280514 27.217753717132492 28.86985703479872 21.90371494678827 44-45 21.743746154464233 27.482202759576644 28.728715865309297 22.045335220649825 46-47 22.107565548126722 27.231015207710524 28.520061462001305 22.141357782161446 48-49 21.995329937770283 27.50878153975674 28.26938778798116 22.226500734491815 50-51 21.826237121754875 27.58618570615242 28.315613367224675 22.27196380486803 52-53 21.843344271650736 27.450809825057753 28.505589697744238 22.200256205547277 54-55 21.98134655084872 27.262047098419917 28.493863766961482 22.262742583769878 56-57 22.04701039042926 27.198175439518042 28.292258930840823 22.462555239211873 58-59 21.49185700286698 27.2759000794276 28.707121817773217 22.5251210999322 60-61 21.916194065979667 27.80011104195004 28.459811651335958 21.823883240734336 62-63 21.221722430094207 28.242072662444656 28.493333942828038 22.0428709646331 64-65 21.09368521939775 28.467750869988922 28.15127439896603 22.287289511647298 66-67 21.212605483816787 28.95427038641538 27.689945408304734 22.143178721463094 68-69 21.408499386760347 28.752308586946384 27.519766378755904 22.319425647537365 70-71 21.44091524790516 28.045513331543614 27.586399079689162 22.927172340862068 72-73 21.678636386688733 27.44594775630627 27.59718444833984 23.278231408665153 74-75 21.785033359635726 27.46955579577342 27.810710872508 22.93469997208285 76-77 22.149355596815244 27.369053592635247 27.134705966996446 23.34688484355306 78-79 22.282829081321985 27.43650825868011 26.74211040202712 23.538552257970785 80-81 22.12827236792992 27.83178470698502 26.91046989056028 23.129473034524786 82-83 22.119506189489023 27.561775025872095 27.00702744488812 23.311691339750766 84-85 22.218969866393913 28.012751253720392 26.94782014851424 22.820458731371463 86-87 22.674263232378127 27.945718579125234 26.989644494097938 22.3903736943987 88-89 22.40144938181373 27.981351056893967 27.337001965452334 22.28019759583996 90-91 22.36982142515192 27.604615477255876 27.23846101846795 22.787102079124246 92-93 22.352100815432028 27.165320342272242 27.512786479756755 22.969792362538975 94-95 21.600448518038334 27.698837395286795 28.114114659574668 22.586599427100207 96-97 21.683320097457408 27.583716050222485 28.301152223401232 22.431811628918876 98-99 22.778896545877274 29.36889674441166 28.745539012811903 19.10666769689916 100 21.992629043577665 30.535409241703874 21.928347107269058 25.543614607449406 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1580.0 1 1229.0 2 1348.0 3 1821.5 4 2216.5 5 3593.0 6 4875.5 7 6094.5 8 6952.5 9 6691.5 10 5587.0 11 4292.5 12 4412.5 13 6202.0 14 11093.0 15 18429.5 16 24455.5 17 27496.0 18 28323.0 19 27597.0 20 25562.5 21 23076.0 22 21950.0 23 23790.5 24 28387.0 25 35393.0 26 44316.0 27 54867.0 28 66969.0 29 80289.5 30 92954.5 31 105899.5 32 120643.0 33 134992.5 34 148466.0 35 161656.5 36 175769.5 37 188116.0 38 196853.0 39 204311.5 40 211373.5 41 217632.0 42 222185.5 43 227294.0 44 233780.0 45 241768.0 46 252208.5 47 257421.5 48 255291.5 49 247420.0 50 237234.5 51 227451.0 52 214453.5 53 200460.0 54 186520.5 55 172017.0 56 157098.5 57 140779.5 58 123774.0 59 106728.5 60 88853.0 61 73252.5 62 59606.5 63 47232.0 64 36743.5 65 27357.0 66 20585.0 67 15672.5 68 11505.5 69 8365.0 70 6315.0 71 4873.0 72 3730.0 73 2872.0 74 2220.0 75 1729.5 76 1316.0 77 966.5 78 718.5 79 566.0 80 444.5 81 340.0 82 272.5 83 184.0 84 113.0 85 86.0 86 70.0 87 56.0 88 39.5 89 24.5 90 17.5 91 14.5 92 12.5 93 7.0 94 2.5 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005961980503092667 3 1.758696313596657E-4 4 0.0 5 0.009549720982829848 6 0.008441742305263953 7 0.0 8 0.0 9 0.0 10-11 6.155437097588299E-5 12-13 8.793481567983285E-6 14-15 8.793481567983285E-6 16-17 2.6380444703949854E-4 18-19 9.496960093421949E-4 20-21 0.0 22-23 1.6710897774512996E-4 24-25 0.0 26-27 2.6403904398151165E-5 28-29 0.0 30-31 0.0 32-33 0.0 34-35 6.213378237713733E-5 36-37 0.0 38-39 8.967891629845251E-6 40-41 0.0 42-43 6.361719750976843E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.004197478903414309 52-53 2.8458842679422807E-5 54-55 4.750580734741919E-5 56-57 0.0 58-59 0.0 60-61 1.0566264357752194E-4 62-63 6.114320320506848E-4 64-65 9.518441440585693E-4 66-67 0.0011031515250175387 68-69 0.00681778517450962 70-71 7.757662069299196E-4 72-73 4.751300901022243E-4 74-75 3.6540637312563497E-4 76-77 8.44571322517401E-5 78-79 0.0 80-81 1.4056775749769494E-4 82-83 0.0 84-85 2.215836182344705E-5 86-87 1.907252980166925E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 169.0 20-21 675.0 22-23 1276.0 24-25 2190.0 26-27 3563.0 28-29 6429.0 30-31 14393.0 32-33 18565.0 34-35 25479.0 36-37 35555.0 38-39 24246.0 40-41 40881.0 42-43 47769.0 44-45 56852.0 46-47 57112.0 48-49 50350.0 50-51 27665.0 52-53 8237.0 54-55 8326.0 56-57 8020.0 58-59 29540.0 60-61 53339.0 62-63 54871.0 64-65 62781.0 66-67 66577.0 68-69 67023.0 70-71 60424.0 72-73 51627.0 74-75 52488.0 76-77 55026.0 78-79 56253.0 80-81 56840.0 82-83 54905.0 84-85 55581.0 86-87 58289.0 88-89 62187.0 90-91 65192.0 92-93 69706.0 94-95 87193.0 96-97 219141.0 98-99 485316.0 100-101 3423979.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.36604949647477 #Duplication Level Percentage of deduplicated Percentage of total 1 90.10789473119681 77.82262896377682 2 7.14745988018642 12.34595747572496 3 1.6313885119368254 4.226897429097486 4 0.552367553378603 1.9082321382137237 5 0.2306262626222313 0.9959139606409309 6 0.11727090760069991 0.6076935006203141 7 0.06350863195277871 0.383949275548096 8 0.04402590591573601 0.30418748555564784 9 0.02647318608404403 0.20577460496975403 >10 0.07733215926667888 1.0039326553975056 >50 9.768480632747645E-4 0.05859257034826433 >100 6.754217959077386E-4 0.13623994010644414 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.758696313596657E-5 0.0 1.758696313596657E-5 0.0 5 0.0 1.758696313596657E-5 0.0 1.758696313596657E-5 0.0 6 0.0 1.758696313596657E-5 0.0 1.758696313596657E-5 0.0 7 0.0 1.758696313596657E-5 0.0 1.758696313596657E-5 0.0 8 0.0 3.517392627193314E-5 0.0 1.758696313596657E-5 0.0 9 0.0 1.0552177881579943E-4 0.0 3.517392627193314E-5 0.0 10-11 0.0 1.0552177881579943E-4 0.0 3.517392627193314E-5 0.0 12-13 0.0 1.0552177881579943E-4 0.0 3.517392627193314E-5 0.0 14-15 0.0 1.0552177881579943E-4 0.0 3.517392627193314E-5 0.0 16-17 0.0 1.0552177881579943E-4 0.0 3.517392627193314E-5 0.0 18-19 0.0 1.23108741951766E-4 0.0 3.517392627193314E-5 0.0 20-21 0.0 1.4069570508773256E-4 0.0 4.396740783991643E-5 0.0 22-23 0.0 2.0225007606361557E-4 0.0 7.914133411184956E-5 0.0 24-25 0.0 2.46217483903532E-4 0.0 2.1104355763159883E-4 0.0 26-27 0.0 2.46217483903532E-4 0.0 3.2535881801538154E-4 0.0 28-29 0.0 2.46217483903532E-4 0.0 0.0013981635693093423 0.0 30-31 0.0 2.8139141017546513E-4 0.0 0.005073838864726355 0.0 32-33 0.0 2.8139141017546513E-4 0.0 0.012099830637545 0.0 34-35 0.0 3.2535881801538154E-4 0.0 0.022555280221877128 0.0 36-37 0.0 3.6932622585529796E-4 0.0 0.04173386352164867 0.0 38-39 0.0 3.6932622585529796E-4 0.0 0.2102785247351843 0.0 40-41 0.0 4.0450015212723113E-4 0.0 0.3860426343160342 0.0 42-43 0.0 4.1329363369521443E-4 0.0 0.42780287828238683 0.0 44-45 0.0 4.6605452310311414E-4 0.0 0.48962105370530934 0.0 46-47 0.0 5.100219309430305E-4 0.0 0.5559326982094712 0.0 48-49 0.0 5.100219309430305E-4 0.0 0.6078054459790048 0.0 50-51 0.0 6.1554370975883E-4 0.0 0.6579107039533735 0.0 52-53 0.0 6.1554370975883E-4 0.0 1.1721886799753078 0.0 54-55 0.0 6.1554370975883E-4 0.0 1.8764674122366571 0.0 56-57 0.0 6.1554370975883E-4 0.0 2.6371387417934833 0.0 58-59 0.0 6.1554370975883E-4 0.0 3.4166193284242254 0.0 60-61 0.0 6.419241544627798E-4 0.0 3.624215841281175 0.0 62-63 0.0 6.507176360307631E-4 0.0 3.6310307894963625 0.0 64-65 0.0 7.034785254386629E-4 0.0 3.636825693849663 0.0 66-67 0.0 7.210654885746294E-4 0.0 3.641996261011637 0.0 68-69 0.0 7.210654885746294E-4 0.0 3.6474394261022187 0.0 70-71 0.0 7.210654885746294E-4 0.0 3.652442917114401 0.0 72-73 0.0 7.210654885746294E-4 0.0 3.6563296359674498 0.0 74-75 0.0 7.650328964145458E-4 0.0 3.659240278366452 0.0 76-77 0.0 7.738263779825291E-4 0.0 3.662660942696398 0.0 78-79 0.0 7.738263779825291E-4 0.0 3.6648065521989857 0.0 80-81 0.0 7.738263779825291E-4 0.0 3.665677106874216 0.0 82-83 0.0 7.826198595505124E-4 0.0 3.6664421397706306 0.0 84-85 0.0 7.914133411184957E-4 0.0 3.6666971507361024 0.0 86-87 0.0 7.914133411184957E-4 0.0 3.6667587051070782 0.0 88 0.0 8.090003042544623E-4 0.0 3.6667762920702143 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7385 0.0 52.33801 1 GTATCAA 13185 0.0 36.337513 1 ATCAACG 16090 0.0 29.089521 3 TCAACGC 16220 0.0 28.882559 4 CAACGCA 16665 0.0 28.060345 5 TATCAAC 17000 0.0 27.783194 2 AACGCAG 17260 0.0 27.188587 6 GTGGTAT 3430 0.0 24.271032 1 ACGCAGA 19905 0.0 23.595827 7 CGCAGAG 20910 0.0 22.42112 8 GTACATG 18765 0.0 21.163588 1 TACATGG 18575 0.0 21.151403 2 TGGTATC 3520 0.0 21.116488 2 ACATGGG 19090 0.0 20.090595 3 GCAGAGT 23390 0.0 19.95307 9 GAGTACT 13485 0.0 18.863983 12-13 CATGGGG 13160 0.0 18.234907 4 ATCTCGT 11345 0.0 18.233376 94 CAGAGTA 23150 0.0 18.224728 10-11 TATCTCG 12655 0.0 18.019567 94 >>END_MODULE