##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138958_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5397608 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4481913099284 34.0 31.0 34.0 31.0 34.0 2 32.584044821335674 34.0 31.0 34.0 31.0 34.0 3 32.63019674641063 34.0 31.0 34.0 31.0 34.0 4 36.155840513056894 37.0 35.0 37.0 35.0 37.0 5 36.06525575773565 37.0 35.0 37.0 35.0 37.0 6 36.0816289363733 37.0 35.0 37.0 35.0 37.0 7 36.04025449791834 37.0 35.0 37.0 35.0 37.0 8 36.03727725318326 37.0 35.0 37.0 35.0 37.0 9 37.76586980751473 39.0 38.0 39.0 35.0 39.0 10-11 37.69559868000789 39.0 38.0 39.0 35.0 39.0 12-13 37.67162861771362 39.0 37.0 39.0 35.0 39.0 14-15 39.093066965959736 41.0 38.0 41.0 36.0 41.0 16-17 39.06733427103265 41.0 38.0 41.0 35.0 41.0 18-19 39.073651050613535 41.0 38.5 41.0 35.0 41.0 20-21 39.05780003420232 41.0 39.0 41.0 35.0 41.0 22-23 39.041867580281576 41.0 39.0 41.0 35.0 41.0 24-25 38.997845367766004 41.0 39.0 41.0 35.0 41.0 26-27 38.93462677622457 41.0 38.0 41.0 35.0 41.0 28-29 38.87553725047188 40.5 38.0 41.0 35.0 41.0 30-31 38.79242625404631 40.0 38.0 41.0 35.0 41.0 32-33 38.69466241413178 40.0 38.0 41.0 34.0 41.0 34-35 38.613742967187775 40.0 38.0 41.0 34.0 41.0 36-37 38.58963633661756 40.0 38.0 41.0 34.0 41.0 38-39 38.53369552533446 40.0 38.0 41.0 34.0 41.0 40-41 38.52207589108378 40.0 38.0 41.0 34.0 41.0 42-43 38.468942738803435 40.0 38.0 41.0 34.0 41.0 44-45 38.37813944964997 40.0 38.0 41.0 33.0 41.0 46-47 38.32374360649463 40.0 38.0 41.0 33.0 41.0 48-49 38.26521637491997 40.0 38.0 41.0 33.0 41.0 50-51 38.20345047680994 40.0 37.5 41.0 33.0 41.0 52-53 38.076476189368336 40.0 37.0 41.0 33.0 41.0 54-55 37.94852745961117 40.0 37.0 41.0 33.0 41.0 56-57 37.823142884694164 40.0 36.5 41.0 33.0 41.0 58-59 37.70599798848922 40.0 36.0 41.0 32.0 41.0 60-61 37.573754216890016 39.5 36.0 41.0 32.0 41.0 62-63 37.35652336221226 39.0 35.5 41.0 32.0 41.0 64-65 37.14651732094667 39.0 35.0 41.0 32.0 41.0 66-67 36.91550607149372 38.5 35.0 41.0 31.5 41.0 68-69 36.585157449231154 37.5 35.0 40.0 31.0 41.0 70-71 36.26017120597732 37.0 35.0 40.0 31.0 41.0 72-73 35.95524249407801 36.5 35.0 39.0 31.0 41.0 74-75 35.6874213200833 36.0 35.0 39.0 31.0 41.0 76-77 35.39785687796619 36.0 34.5 38.5 31.0 40.0 78-79 35.12909505019567 35.0 34.0 37.0 31.0 39.0 80-81 34.85308785605268 35.0 34.0 37.0 31.0 39.0 82-83 34.55723119849185 35.0 34.0 36.5 31.0 39.0 84-85 34.336376913735926 35.0 34.0 36.0 30.0 37.0 86-87 34.17849727604738 35.0 34.0 36.0 31.0 37.0 88-89 34.04084406932981 35.0 34.0 35.5 31.0 37.0 90-91 33.90917636849028 35.0 34.0 35.0 30.0 36.0 92-93 33.86552626888382 35.0 34.0 35.0 31.0 36.0 94-95 33.81101592666208 35.0 34.0 35.0 31.0 36.0 96-97 33.81075197024805 35.0 34.0 35.0 31.0 36.0 98-99 33.96393972600437 35.0 34.0 35.0 31.0 36.0 100 31.187128442140537 33.0 29.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 8.0 19 25.0 20 65.0 21 135.0 22 638.0 23 2140.0 24 5989.0 25 12890.0 26 23511.0 27 37043.0 28 54610.0 29 73576.0 30 94992.0 31 118823.0 32 147924.0 33 186085.0 34 244652.0 35 340353.0 36 495165.0 37 924806.0 38 1486773.0 39 1051525.0 40 95878.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.6327580661656 20.73027533677881 14.731080878789271 23.905885718266315 2 14.970994595415831 21.32907933084689 40.98898146655624 22.710944607181037 3 17.957866837507996 26.274802453904982 30.853799678783222 24.913531029803796 4 12.793778281045975 18.377251552910103 38.44267683018107 30.386293335862845 5 13.059376822775965 38.00330851208118 35.697615040092735 13.23969962505012 6 29.757233440672476 38.12279353030149 18.67032134851905 13.449651680506985 7 26.07508733498246 32.976459201927966 23.306972273644178 17.6414811894454 8 24.369479962235125 36.83757694148964 21.128951935746354 17.663991160528887 9 25.529660545930717 16.724260079650097 21.314626775416073 36.43145259900311 10-11 24.21835015545319 26.8060716923458 28.973903335469775 20.001674816731235 12-13 24.948282627520424 24.39711234943788 29.093824187982598 21.5607808350591 14-15 22.12506910468489 25.779669438758802 26.73418484632452 25.36107661023179 16-17 21.67893817914494 28.794383647831367 27.45504665410305 22.071631518920647 18-19 21.76288109335289 27.879865020540755 29.212512982713307 21.14474090339305 20-21 22.479923420565374 27.019013218067684 29.178048575099474 21.323014786267468 22-23 22.24182374730735 26.947706209253546 28.99911802402544 21.81135201941366 24-25 22.111165709991713 27.073082527371678 29.044610827891006 21.771140934745606 26-27 22.01084142060237 27.218148516947405 29.005765456386605 21.765244606063618 28-29 21.90306890655155 27.279429155786016 28.974578741098885 21.84292319656355 30-31 22.30174117898901 27.035955972339444 28.947319031813652 21.714983816857895 32-33 22.144113558238605 27.18765412507618 28.863072861023326 21.805159455661894 34-35 22.114741058930516 27.27241391711625 28.91649739590023 21.696347628053005 36-37 22.17524539866078 27.18887425384164 28.8288959309305 21.806984416567083 38-39 21.95586864656434 27.320557582346854 28.882221008107724 21.841352762981085 40-41 22.257435082591776 27.162498974628512 28.727472208634996 21.85259373414472 42-43 22.115668660327565 27.285114540378657 28.547648533664038 22.051568265629744 44-45 22.121349805969224 27.39307917533474 28.402947351250702 22.082623667445333 46-47 22.25757880217424 27.383458611480414 28.079994594775627 22.278967991569722 48-49 22.21567446526797 27.520782685406793 28.02870341832226 22.234839431002978 50-51 22.186142229650358 27.63603849017176 27.940654872186816 22.23716440799106 52-53 22.3120876531574 27.580582357545648 27.88429128260835 22.223038706688605 54-55 22.27206239779479 27.437474194158874 27.975935129269036 22.314528278777296 56-57 22.27948003337733 27.4970993413286 27.864033169837366 22.3593874554567 58-59 22.126901910003237 27.53898572551381 27.944371586639015 22.38974077784394 60-61 22.448204859082736 27.550613647258597 27.958413888940832 22.042767604717838 62-63 22.13927715324783 27.676594814766357 27.921663456274377 22.262464575711437 64-65 22.013747620634298 27.64772990596569 27.92065276351655 22.417869709883462 66-67 22.1522965434809 27.727019588663737 27.898866654600923 22.221817213254443 68-69 22.105696373142735 27.845829874798827 27.792717460639434 22.25575629141901 70-71 22.15316910335958 27.54601233612876 27.64298375933652 22.657834801175134 72-73 22.216468760921735 27.551824211820016 27.53541776270104 22.69628926455721 74-75 22.080003012400386 27.68492846319796 27.789745903586894 22.44532262081476 76-77 22.277371892519398 27.420192358391482 27.637341404219374 22.66509434486975 78-79 22.200800573672872 27.47514779531879 27.406047516927316 22.91800411408102 80-81 22.436579411109722 27.70781910696295 27.38771070343779 22.467890778489537 82-83 22.435422791977427 27.539634950269647 27.522067225367103 22.50287503238582 84-85 22.350421368985852 27.504255109476354 27.44866439766277 22.696659123875023 86-87 22.167690682816456 27.80571381354804 27.493182805568452 22.533412698067057 88-89 22.439880396664293 27.719182695442125 27.485060607978458 22.355876299915124 90-91 22.509557898562317 27.7148491396079 27.488847306076508 22.286745655753272 92-93 22.408861612081388 27.418977033916846 27.545596007028394 22.626565346973372 94-95 22.39195591702982 27.763673913111198 27.64455769069031 22.199812479168678 96-97 22.56533015130377 27.701762816136995 27.724181119475904 22.00872591308333 98-99 23.2313089585839 29.6572855407095 28.09366813883234 19.01773736187426 100 22.352817641094493 30.650858446792927 21.52810296809272 25.468220944019855 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1712.0 1 1320.5 2 1382.0 3 1883.0 4 2273.0 5 3595.5 6 4949.0 7 6285.0 8 7196.5 9 7116.0 10 6180.5 11 4864.5 12 4861.5 13 6389.0 14 10912.5 15 17761.0 16 23399.0 17 26430.0 18 27329.5 19 26596.0 20 24792.5 21 22825.5 22 21997.5 23 23672.5 24 28185.0 25 35470.5 26 44975.0 27 54814.5 28 64773.0 29 76535.5 30 88049.0 31 99533.5 32 111643.5 33 123768.0 34 136422.5 35 148204.5 36 160651.5 37 172345.0 38 181154.5 39 188901.5 40 197311.5 41 204625.5 42 209240.0 43 212962.5 44 216728.5 45 220828.0 46 224468.5 47 226774.5 48 227448.0 49 226077.5 50 222299.5 51 216112.0 52 206676.0 53 194289.5 54 181728.5 55 169173.0 56 157385.5 57 144128.0 58 128588.5 59 112485.0 60 94515.0 61 77115.5 62 61949.5 63 48962.5 64 38092.5 65 29635.0 66 23251.0 67 18185.0 68 13931.5 69 10721.0 70 8370.0 71 6289.5 72 4788.0 73 3637.0 74 2717.0 75 2054.0 76 1541.0 77 1152.5 78 889.0 79 696.0 80 535.5 81 389.0 82 299.5 83 216.5 84 145.5 85 112.5 86 88.5 87 64.5 88 43.5 89 32.5 90 27.0 91 20.5 92 14.5 93 7.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006262033107998951 3 1.296870762011617E-4 4 0.0 5 0.011486569606388608 6 0.012876073994258198 7 0.0 8 0.0 9 0.0 10-11 4.631681292898632E-5 12-13 3.7053450343189056E-5 14-15 0.0 16-17 2.2232070205913435E-4 18-19 8.522293578933482E-4 20-21 0.0 22-23 1.1118499766001908E-4 24-25 0.0 26-27 9.272352163935187E-6 28-29 0.0 30-31 0.0 32-33 0.0 34-35 4.670609906924086E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.9120173733546612E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.006512412688320984 52-53 6.988924651105394E-5 54-55 2.0111708473545463E-5 56-57 0.0 58-59 0.0 60-61 3.082156420465724E-5 62-63 0.0010262921536543879 64-65 0.0013599926769625088 66-67 9.72012074503035E-4 68-69 0.009831502353902915 70-71 7.552234490407583E-4 72-73 4.905558728422492E-4 74-75 3.963669009855663E-4 76-77 1.2236240875518608E-4 78-79 0.0 80-81 1.0236179366523804E-4 82-83 0.0 84-85 1.1634722759681776E-5 86-87 1.5301660465570676E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 196.0 20-21 691.0 22-23 1336.0 24-25 2303.0 26-27 3309.0 28-29 5352.0 30-31 11951.0 32-33 15231.0 34-35 20419.0 36-37 29428.0 38-39 32287.0 40-41 35493.0 42-43 41261.0 44-45 49808.0 46-47 49751.0 48-49 44393.0 50-51 37799.0 52-53 35167.0 54-55 36318.0 56-57 40978.0 58-59 26127.0 60-61 44071.0 62-63 43226.0 64-65 46181.0 66-67 48437.0 68-69 49318.0 70-71 48786.0 72-73 45421.0 74-75 45834.0 76-77 47809.0 78-79 50038.0 80-81 50527.0 82-83 48867.0 84-85 48899.0 86-87 51835.0 88-89 55682.0 90-91 58705.0 92-93 63177.0 94-95 79989.0 96-97 216220.0 98-99 439909.0 100-101 3295079.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.72639261452915 #Duplication Level Percentage of deduplicated Percentage of total 1 90.69179963239017 78.65372621836879 2 6.683266774098717 11.59231236396246 3 1.5016988993340985 3.907107849973659 4 0.5559116595219918 1.9284885137079484 5 0.22730424026049945 0.9856638391889667 6 0.12165218811523648 0.6330273257339133 7 0.06545770691080799 0.39738375524354574 8 0.040443963233085765 0.28060472273921416 9 0.026660887467668544 0.20809823345755216 >10 0.0828745812134004 1.1008212500564953 >50 0.0019845976663426853 0.11436312378957991 >100 9.127375005491694E-4 0.17761389211359224 >500 3.213228749928254E-5 0.020788911664242158 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.8526725171594528E-5 0.0 3 0.0 0.0 0.0 1.8526725171594528E-5 0.0 4 0.0 3.7053450343189056E-5 0.0 1.8526725171594528E-5 0.0 5 0.0 3.7053450343189056E-5 0.0 3.7053450343189056E-5 0.0 6 0.0 3.7053450343189056E-5 0.0 5.558017551478359E-5 1.8526725171594528E-5 7 0.0 3.7053450343189056E-5 0.0 5.558017551478359E-5 1.8526725171594528E-5 8 0.0 5.558017551478359E-5 0.0 5.558017551478359E-5 1.8526725171594528E-5 9 0.0 9.263362585797264E-5 0.0 5.558017551478359E-5 1.8526725171594528E-5 10-11 0.0 9.263362585797264E-5 0.0 1.1116035102956718E-4 1.8526725171594528E-5 12-13 0.0 9.263362585797264E-5 0.0 1.1116035102956718E-4 1.8526725171594528E-5 14-15 0.0 1.6674052654435076E-4 0.0 1.1116035102956718E-4 1.8526725171594528E-5 16-17 0.0 1.6674052654435076E-4 0.0 1.1116035102956718E-4 1.8526725171594528E-5 18-19 0.0 2.0379397688753982E-4 0.0 1.2042371361536443E-4 1.8526725171594528E-5 20-21 0.0 2.4084742723072888E-4 0.0 1.296870762011617E-4 1.8526725171594528E-5 22-23 0.0 2.8716424015971516E-4 0.0 1.3895043878695896E-4 4.631681292898632E-5 24-25 0.0 2.9642760274551245E-4 0.0 1.6674052654435076E-4 7.410690068637811E-5 26-27 0.0 2.9642760274551245E-4 0.0 2.686375149881207E-4 7.410690068637811E-5 28-29 0.0 2.9642760274551245E-4 0.0 8.892828082365373E-4 7.410690068637811E-5 30-31 0.0 2.9642760274551245E-4 0.0 0.0031032264662420837 8.337026327217538E-5 32-33 0.0 3.14954327917107E-4 0.0 0.00863345392996305 1.1116035102956718E-4 34-35 0.0 3.705345034318906E-4 0.0 0.016470258677547533 1.1116035102956718E-4 36-37 0.0 4.53904766704066E-4 0.0 0.029457493022835304 1.1116035102956718E-4 38-39 0.0 4.8169485446145777E-4 0.0 0.06627935930137943 1.1116035102956718E-4 40-41 0.0 5.187483048046468E-4 0.0 0.1039441915752311 1.2042371361536443E-4 42-43 0.0 5.558017551478358E-4 0.0 0.12675985362404976 1.296870762011617E-4 44-45 0.0 6.29908655834214E-4 0.0 0.15708810272995 1.296870762011617E-4 46-47 0.0 6.66962106177403E-4 0.0 0.1882407911059862 1.4821380137275623E-4 48-49 0.0 6.66962106177403E-4 0.0 0.21222363684061532 1.4821380137275623E-4 50-51 0.0 7.318056442779839E-4 0.0 0.23676228433039226 1.4821380137275623E-4 52-53 0.0 7.410690068637812E-4 0.0 0.31791860394456206 1.6674052654435076E-4 54-55 0.0 7.595957320353757E-4 0.0 0.4153969684349067 1.852672517159453E-4 56-57 0.0 7.781224572069702E-4 0.0 0.5274373389101246 1.852672517159453E-4 58-59 0.0 7.781224572069702E-4 0.0 0.7444223441198398 1.852672517159453E-4 60-61 0.0 8.05912544964362E-4 0.0 0.9198426414070826 1.852672517159453E-4 62-63 0.0 8.244392701359565E-4 0.0 0.925854563725265 1.852672517159453E-4 64-65 0.0 9.633897089229155E-4 0.0 0.9314311080019149 1.852672517159453E-4 66-67 0.0 9.819164340945101E-4 0.0 0.9367760682139199 1.852672517159453E-4 68-69 0.0 0.001018969884437699 0.0 0.9422229254143687 1.852672517159453E-4 70-71 0.0 0.001046759972195091 0.0 0.9468638700698532 2.2232070205913435E-4 72-73 0.0 0.0010745500599524827 0.0 0.950893432794675 2.4084742723072888E-4 74-75 0.0 0.0010838134225382798 0.0 0.9536261247574851 2.4084742723072888E-4 76-77 0.0 0.0011116035102956717 0.0 0.9567478779488989 2.5011078981652615E-4 78-79 0.0 0.0011301302354672662 0.0 0.9588599246184606 2.593741524023234E-4 80-81 0.0 0.0011301302354672662 0.0 0.9596380470756676 2.593741524023234E-4 82-83 0.0 0.0011486569606388606 0.0 0.9605921734220046 2.8716424015971516E-4 84-85 0.0 0.0011857104109820498 0.0 0.9608608109369928 2.9642760274551245E-4 86-87 0.0 0.0012042371361536443 0.0 0.9609071277499218 2.9642760274551245E-4 88 0.0 0.0012783440368400224 0.0 0.9609256544750934 3.14954327917107E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7195 0.0 50.55451 1 GTATCAA 12450 0.0 35.454704 1 TCAACGC 15485 0.0 28.091978 4 ATCAACG 15605 0.0 27.90315 3 TATCAAC 15990 0.0 27.393097 2 CAACGCA 16005 0.0 27.152756 5 AACGCAG 16645 0.0 26.131567 6 TGGTATC 2980 0.0 24.782372 2 GTGGTAT 3205 0.0 24.764153 1 ACGCAGA 18880 0.0 22.989985 7 CGCAGAG 19400 0.0 22.37376 8 GTACATG 15470 0.0 20.714123 1 TACATGG 15245 0.0 20.71359 2 ACATGGG 15565 0.0 19.604214 3 GCAGAGT 22345 0.0 19.424967 9 GAGTACT 14035 0.0 18.83444 12-13 AGAGTAC 20375 0.0 18.200397 10-11 CAGAGTA 21860 0.0 17.9733 10-11 CATGGGG 12075 0.0 17.924732 4 GTACTTT 15445 0.0 17.198784 14-15 >>END_MODULE