##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138957_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9593184 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51231843358785 34.0 31.0 34.0 31.0 34.0 2 32.64498210396048 34.0 31.0 34.0 31.0 34.0 3 32.693996487506126 34.0 31.0 34.0 31.0 34.0 4 36.19894260341509 37.0 35.0 37.0 35.0 37.0 5 36.112944878363635 37.0 35.0 37.0 35.0 37.0 6 36.12542790798133 37.0 36.0 37.0 35.0 37.0 7 36.086109054095076 37.0 36.0 37.0 35.0 37.0 8 36.08277710507794 37.0 36.0 37.0 35.0 37.0 9 37.82760520386141 39.0 38.0 39.0 35.0 39.0 10-11 37.76127060629714 39.0 38.0 39.0 35.0 39.0 12-13 37.74203027899809 39.0 38.0 39.0 35.0 39.0 14-15 39.186837915336554 41.0 39.0 41.0 36.0 41.0 16-17 39.1607193711702 41.0 39.0 41.0 36.0 41.0 18-19 39.16223049615227 41.0 39.0 41.0 36.0 41.0 20-21 39.14702497999444 41.0 39.0 41.0 35.5 41.0 22-23 39.13197562259212 41.0 39.0 41.0 35.0 41.0 24-25 39.089774228999914 41.0 39.0 41.0 35.0 41.0 26-27 39.03365338752938 41.0 39.0 41.0 35.0 41.0 28-29 38.98090014252322 41.0 39.0 41.0 35.0 41.0 30-31 38.90529470511057 40.5 38.0 41.0 35.0 41.0 32-33 38.819157596685116 40.0 38.0 41.0 35.0 41.0 34-35 38.74428696379263 40.0 38.0 41.0 34.5 41.0 36-37 38.72015960526124 40.0 38.0 41.0 34.0 41.0 38-39 38.67391723379025 40.0 38.0 41.0 34.0 41.0 40-41 38.66279490713055 40.0 38.0 41.0 34.0 41.0 42-43 38.612779442534304 40.0 38.0 41.0 34.0 41.0 44-45 38.52880373655253 40.0 38.0 41.0 34.0 41.0 46-47 38.480427441152855 40.0 38.0 41.0 34.0 41.0 48-49 38.428860226760065 40.0 38.0 41.0 33.0 41.0 50-51 38.359906943520926 40.0 38.0 41.0 33.0 41.0 52-53 38.2287962099617 40.0 37.5 41.0 33.0 41.0 54-55 38.11357840007169 40.0 37.0 41.0 33.0 41.0 56-57 37.990490430416884 40.0 37.0 41.0 33.0 41.0 58-59 37.882947324932225 40.0 36.5 41.0 33.0 41.0 60-61 37.75039365717316 40.0 36.0 41.0 33.0 41.0 62-63 37.54512683015248 39.0 36.0 41.0 32.0 41.0 64-65 37.345891259566315 39.0 35.0 41.0 32.0 41.0 66-67 37.11857877638435 39.0 35.0 41.0 32.0 41.0 68-69 36.78453794799888 38.0 35.0 40.5 31.5 41.0 70-71 36.454032659523705 37.0 35.0 40.0 31.0 41.0 72-73 36.15133460595925 37.0 35.0 39.5 31.0 41.0 74-75 35.86661572003837 36.0 35.0 39.0 31.0 41.0 76-77 35.5574302250825 36.0 35.0 39.0 31.0 40.5 78-79 35.26334653776389 35.5 34.5 37.5 31.0 39.5 80-81 34.953668311850194 35.0 34.0 37.0 31.0 39.0 82-83 34.63762156249982 35.0 34.0 36.5 31.0 39.0 84-85 34.417947967667374 35.0 34.0 36.0 31.0 37.5 86-87 34.246760567817695 35.0 34.0 36.0 31.0 37.0 88-89 34.09639980492986 35.0 34.0 35.5 31.0 37.0 90-91 33.96958385319762 35.0 34.0 35.0 31.0 36.0 92-93 33.910411183139516 35.0 34.0 35.0 31.0 36.0 94-95 33.83044418917793 35.0 34.0 35.0 31.0 36.0 96-97 33.81743744479123 35.0 34.0 35.0 31.0 36.0 98-99 33.97124397704502 35.0 34.0 35.0 31.0 36.0 100 31.082078387946595 33.0 29.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 25.0 19 50.0 20 95.0 21 285.0 22 1065.0 23 3510.0 24 9465.0 25 20541.0 26 37072.0 27 60576.0 28 88566.0 29 121578.0 30 157991.0 31 199125.0 32 248764.0 33 313400.0 34 412364.0 35 567292.0 36 841642.0 37 1587760.0 38 2701649.0 39 2009201.0 40 211167.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.55866123280863 20.711371740602495 14.275875454906316 24.45409157168256 2 14.63234691624514 21.401483284743257 41.26032291497915 22.70584688403245 3 17.840175033099115 26.211027297895782 30.949540385923008 24.999257283082095 4 12.533555074102612 18.480402335658315 38.81415179777642 30.171890792462648 5 12.962166007684269 37.92261768116178 36.037465145658985 13.07775116549497 6 29.494034149877436 38.427895881270366 18.850113912504895 13.22795605634731 7 25.820499221113657 32.86466724707876 23.59070773582577 17.724125795981813 8 23.91147714877563 37.17167313792793 21.483586679876048 17.433263033420396 9 25.10632549109868 16.759242812396803 21.619235073568902 36.51519662293562 10-11 23.806263804730424 26.841086776343897 29.48307333783723 19.86957608108845 12-13 24.5666908001347 24.46035482400333 29.434952138126064 21.538002237735906 14-15 21.81162507853885 25.926172049786402 26.843271250182095 25.418931621492657 16-17 21.50415801423535 29.03666997770599 27.597389431908837 21.86178257614982 18-19 21.564053184298352 28.17694540588545 29.170717540622583 21.088283869193617 20-21 22.239335433134563 27.3231370588369 29.06473536937744 21.372792138651096 22-23 21.988496256977538 27.358344994058687 28.890027882522446 21.76313086644133 24-25 21.934019253987504 27.43477863212236 28.932890954593017 21.698311159297123 26-27 21.861862024788373 27.563105189043902 28.88074943448784 21.694283351679886 28-29 21.79962809010832 27.536044237417133 28.92685337062526 21.737474301849286 30-31 21.959211279884904 27.30369326370421 28.965385823754307 21.77170963265658 32-33 21.714482070285825 27.583485282434395 28.829628768614835 21.87240387866494 34-35 21.95966896961981 27.52042872086885 28.81281178655884 21.707090522952505 36-37 21.893072441399955 27.47938585624004 28.86527672832848 21.762264974031524 38-39 21.711362803889944 27.535881456366184 28.817832343885808 21.934923395858064 40-41 22.071565923711294 27.338869335738686 28.796841643502592 21.792723097047425 42-43 21.915589444931026 27.4011601083754 28.638406829049543 22.044843617644034 44-45 21.884214519921056 27.533706304337002 28.504067603069387 22.07801157267256 46-47 22.024129837377476 27.441335482159126 28.38502599381582 22.149508686647582 48-49 21.94728436564875 27.73996250970907 28.143460181792797 22.169292942849385 50-51 21.81183647627577 27.79501680878364 28.06547206338033 22.327674651560255 52-53 21.82275276145937 27.625826853285997 28.075475456555438 22.475944928699203 54-55 22.025346269273168 27.28939182056223 28.36205526661844 22.323206643546158 56-57 21.897545433717642 27.003639873151243 28.403762649420404 22.69505204371071 58-59 21.549897378112497 26.92065119719474 28.59731826014927 22.932133164543494 60-61 21.855532955504486 27.29309148986596 28.731122883308096 22.120252671321452 62-63 21.2730516749738 27.659826471650856 28.66402075492002 22.403101098455323 64-65 21.049715788734645 28.06837817439709 28.23445524851746 22.647450788350806 66-67 21.177800602030832 28.686591330827145 27.70784376594644 22.427764301195584 68-69 21.287615767489097 28.640339256084296 27.499024853656017 22.573020122770597 70-71 21.309011058017273 27.95592090730816 27.479426163379163 23.255641871295406 72-73 21.63757459792783 27.28864110197972 27.470942701677338 23.602841598415107 74-75 21.737099358201185 27.33660805636649 27.72913282300279 23.197159762429543 76-77 22.133549037466306 27.24550132244176 26.96286539172367 23.65808424836826 78-79 22.364507279181982 27.32923931862287 26.43855819037998 23.867695211815164 80-81 22.176948741236806 27.779844284197342 26.624600024323925 23.418606950241923 82-83 22.079861876346467 27.54800771802733 26.733070824666978 23.63905958095923 84-85 22.23216644761717 28.011144080808787 26.662746938400865 23.093942533173173 86-87 22.817607709106916 27.846703044355724 26.730895323249065 22.604793923288295 88-89 22.411723292501375 28.016240531485476 27.19475004841127 22.377286127601874 90-91 22.353565987974207 27.57197683240349 27.032282651716162 23.04217452790615 92-93 22.411125106901643 26.991447235067863 27.320577912014077 23.276849746016413 94-95 21.55885237893341 27.582146682911013 28.066265356508442 22.792735581647136 96-97 21.679607406474013 27.441626988217106 28.252727377255344 22.62603822805354 98-99 22.79664865153633 29.226309914743133 28.655664405399524 19.321377028321017 100 21.96155897628509 30.356946815919887 21.829642774313864 25.85185143348116 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1720.0 1 1457.5 2 1921.5 3 2722.5 4 3440.0 5 5691.0 6 7730.0 7 9177.5 8 10108.0 9 9819.0 10 8638.5 11 7123.5 12 7046.5 13 9117.5 14 15755.0 15 25960.5 16 34546.5 17 39330.0 18 41393.5 19 41478.0 20 39589.0 21 37548.5 22 37639.5 23 42254.0 24 51723.5 25 65619.5 26 84360.5 27 104822.0 28 125084.5 29 147704.5 30 169614.0 31 190399.5 32 212372.0 33 233585.0 34 253713.0 35 272012.0 36 292713.0 37 314820.0 38 332194.0 39 345405.5 40 358798.0 41 372076.0 42 382244.0 43 391088.0 44 398998.5 45 406761.5 46 414129.0 47 416383.0 48 413504.0 49 405270.5 50 394576.5 51 382171.0 52 364961.5 53 344624.0 54 322879.0 55 299225.0 56 273744.0 57 246150.0 58 218182.5 59 190523.5 60 158793.0 61 127707.0 62 102030.5 63 80194.0 64 61521.5 65 46504.5 66 35220.5 67 27746.5 68 22039.0 69 16862.5 70 12872.0 71 9928.5 72 7560.0 73 5627.0 74 4211.5 75 3200.5 76 2408.5 77 1807.5 78 1361.0 79 1042.0 80 780.5 81 543.0 82 397.5 83 284.0 84 206.0 85 157.5 86 118.0 87 95.0 88 71.0 89 54.0 90 37.5 91 25.5 92 20.0 93 14.0 94 9.0 95 5.5 96 4.0 97 3.5 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007192606750793063 3 2.8144982937885896E-4 4 0.0 5 0.011695804020854806 6 0.012227431476348208 7 0.0 8 0.0 9 0.0 10-11 5.212033877386277E-5 12-13 5.733237265124906E-5 14-15 1.5636101632158832E-5 16-17 2.3975355835976876E-4 18-19 9.329540640521436E-4 20-21 0.0 22-23 1.4596520377211622E-4 24-25 0.0 26-27 5.216781258483791E-6 28-29 0.0 30-31 0.0 32-33 0.0 34-35 3.686352685263052E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 2.1627063458399937E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0064453060240322515 52-53 1.0752122879334752E-4 54-55 6.800589928507665E-5 56-57 0.0 58-59 1.1365807491180985E-5 60-61 8.022324064989535E-5 62-63 0.0010425075503609335 64-65 0.001428750691611951 66-67 0.0010904948321805497 68-69 0.01038367499025255 70-71 8.451327648852808E-4 72-73 5.723239286973003E-4 74-75 3.9841855226028134E-4 76-77 6.931361936375517E-5 78-79 0.0 80-81 2.0690165737926076E-4 82-83 0.0 84-85 6.6368574426913995E-6 86-87 2.219678037718518E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 303.0 20-21 1089.0 22-23 2247.0 24-25 3809.0 26-27 6256.0 28-29 11330.0 30-31 27907.0 32-33 35025.0 34-35 47759.0 36-37 67620.0 38-39 44695.0 40-41 77205.0 42-43 86964.0 44-45 100670.0 46-47 100870.0 48-49 91164.0 50-51 49528.0 52-53 12799.0 54-55 12596.0 56-57 12067.0 58-59 51954.0 60-61 93311.0 62-63 92746.0 64-65 100327.0 66-67 105861.0 68-69 107462.0 70-71 101741.0 72-73 92703.0 74-75 95744.0 76-77 99085.0 78-79 101435.0 80-81 102216.0 82-83 98626.0 84-85 98758.0 86-87 104492.0 88-89 109318.0 90-91 113989.0 92-93 122238.0 94-95 149807.0 96-97 374965.0 98-99 818785.0 100-101 5665718.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.80808407312749 #Duplication Level Percentage of deduplicated Percentage of total 1 88.17429169011479 73.01544159363492 2 8.032092756198294 13.30244424476853 3 2.08887335715571 5.1892680173239825 4 0.7737104008748311 2.562779036955847 5 0.34513954422055865 1.4290172197388458 6 0.19560325281529015 0.9718518362463455 7 0.11173943436455792 0.6477049932600817 8 0.07058981589850265 0.4676325927703838 9 0.05443942788913215 0.40572222493825943 >10 0.15133164979235436 1.8433739265749607 >50 0.001723148696906389 0.0926903936752633 >100 4.441851702835347E-4 0.05857510773618018 >500 2.1336808820886372E-5 0.013498812376408462 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0424067754772555E-5 0.0 0.0 0.0 3 0.0 1.0424067754772555E-5 0.0 0.0 0.0 4 0.0 1.0424067754772555E-5 0.0 1.0424067754772555E-5 0.0 5 0.0 1.0424067754772555E-5 0.0 1.0424067754772555E-5 0.0 6 0.0 1.0424067754772555E-5 0.0 1.0424067754772555E-5 1.0424067754772555E-5 7 0.0 1.0424067754772555E-5 0.0 1.0424067754772555E-5 2.084813550954511E-5 8 0.0 3.1272203264317665E-5 0.0 1.0424067754772555E-5 2.084813550954511E-5 9 0.0 7.296847428340789E-5 0.0 2.084813550954511E-5 3.1272203264317665E-5 10-11 0.0 7.296847428340789E-5 0.0 4.169627101909022E-5 3.1272203264317665E-5 12-13 0.0 7.296847428340789E-5 0.0 6.775644040602161E-5 3.1272203264317665E-5 14-15 0.0 1.3030084693465692E-4 0.0 7.818050816079416E-5 4.169627101909022E-5 16-17 0.0 1.3551288081204322E-4 0.0 8.339254203818044E-5 5.212033877386278E-5 18-19 0.0 1.4593694856681577E-4 0.0 9.3816609792953E-5 6.254440652863533E-5 20-21 0.0 1.5636101632158833E-4 0.0 1.2508881305727066E-4 6.254440652863533E-5 22-23 0.0 1.6157305019897462E-4 0.0 1.5114898244420204E-4 9.381660979295299E-5 24-25 0.0 2.084813550954511E-4 0.0 2.1369338897283738E-4 1.2508881305727066E-4 26-27 0.0 2.1890542285022365E-4 0.0 3.8569050692658453E-4 1.2508881305727066E-4 28-29 0.0 2.1890542285022365E-4 0.0 0.0015688221970932693 1.2508881305727066E-4 30-31 0.0 2.81449829378859E-4 0.0 0.005847902010427403 1.3030084693465692E-4 32-33 0.0 2.81449829378859E-4 0.0 0.01501065756687248 1.4593694856681577E-4 34-35 0.0 3.3878220203010807E-4 0.0 0.027800988701978405 1.5636101632158833E-4 36-37 0.0 4.0132660855874336E-4 0.0 0.0511613245404237 1.5636101632158833E-4 38-39 0.0 4.2738677794567476E-4 0.0 0.24991702442067198 1.5636101632158833E-4 40-41 0.0 4.69083048964765E-4 0.0 0.4565585315574058 1.5636101632158833E-4 42-43 0.0 5.05567286106469E-4 0.0 0.5057236471227905 1.5636101632158833E-4 44-45 0.0 5.889598281446494E-4 0.0 0.5792185368278144 1.5636101632158833E-4 46-47 0.0 6.358681330411259E-4 0.0 0.6569768702445403 1.7199711795374715E-4 48-49 0.0 6.358681330411259E-4 0.0 0.7176814288144583 1.9805728734067856E-4 50-51 0.0 6.775644040602161E-4 0.0 0.7762542655285252 1.9805728734067856E-4 52-53 0.0 6.879884718149886E-4 0.0 1.3817518771661215 2.2411745672760994E-4 54-55 0.0 6.879884718149886E-4 0.0 2.1928590132327286 2.553896599919276E-4 56-57 0.0 6.879884718149886E-4 0.0 3.0619552382191353 2.7102576162408643E-4 58-59 0.0 6.879884718149886E-4 0.0 3.9422260638386586 2.81449829378859E-4 60-61 0.0 7.036245734471475E-4 0.0 4.179227668311167 2.81449829378859E-4 62-63 0.0 7.348967767114652E-4 0.0 4.188260123020678 2.81449829378859E-4 64-65 0.0 8.130772848722593E-4 0.0 4.196083385870635 2.81449829378859E-4 66-67 0.0 8.182893187496456E-4 0.0 4.20295284652103 2.81449829378859E-4 68-69 0.0 8.65197623646122E-4 0.0 4.209796247002038 2.81449829378859E-4 70-71 0.0 8.860457591556672E-4 0.0 4.215883902570825 2.81449829378859E-4 72-73 0.0 8.860457591556672E-4 0.0 4.220809274584955 3.231461003979492E-4 74-75 0.0 9.173179624199848E-4 0.0 4.224687027789731 3.231461003979492E-4 76-77 0.0 9.329540640521437E-4 0.0 4.228371935741043 3.231461003979492E-4 78-79 0.0 9.485901656843026E-4 0.0 4.23091019623933 3.231461003979492E-4 80-81 0.0 9.485901656843026E-4 0.0 4.231744121659712 3.335701681527217E-4 82-83 0.0 9.485901656843026E-4 0.0 4.232682287757641 3.544183036622669E-4 84-85 0.0 9.59014233439075E-4 0.0 4.23310446250171 3.596303375396531E-4 86-87 0.0 9.694383011938476E-4 0.0 4.233234763348644 3.648423714170394E-4 88 0.0 0.001052830843232028 0.0 4.233234763348644 3.648423714170394E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11145 0.0 49.57492 1 GTATCAA 19375 0.0 31.896055 1 ATCTCGT 13150 0.0 31.513147 94 TCAACGC 21995 0.0 27.09575 4 ATCAACG 22110 0.0 26.97406 3 TATCTCG 15610 0.0 26.913748 94 CAACGCA 22720 0.0 26.24971 5 TATCAAC 23630 0.0 25.401814 2 AACGCAG 23565 0.0 25.287617 6 ACGCAGA 27145 0.0 21.9337 7 CGCAGAG 27710 0.0 21.532194 8 CCGTCTT 8535 0.0 20.973742 90-91 GCCGTCT 8960 0.0 20.776722 90-91 ATGCCGT 8895 0.0 20.41707 88-89 TATGCCG 8675 0.0 20.26239 86-87 GTACATG 23705 0.0 20.153803 1 TGCCGTC 8725 0.0 20.148804 88-89 CTATCTC 22015 0.0 20.091335 94 TACATGG 23135 0.0 19.974787 2 CGCTATC 21975 0.0 19.86735 94 >>END_MODULE