##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138955_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9982213 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.509656826597467 33.0 31.0 34.0 28.0 34.0 2 32.159981659377536 33.0 31.0 34.0 30.0 34.0 3 32.225497091676964 33.0 31.0 34.0 30.0 34.0 4 33.93358356508722 34.0 33.0 37.0 31.0 37.0 5 34.201565023707666 34.0 33.0 37.0 33.0 37.0 6 36.35285572447713 37.0 37.0 38.0 34.0 38.0 7 36.69508114082519 37.0 37.0 38.0 35.0 38.0 8 36.67822465819954 37.0 37.0 38.0 35.0 38.0 9 37.508137023323386 38.0 38.0 39.0 36.0 39.0 10-11 37.51179708347237 38.0 38.0 39.0 36.0 39.0 12-13 37.52035515571547 38.0 38.0 39.0 36.0 39.0 14-15 38.139787289652105 38.0 38.0 40.0 36.0 41.0 16-17 38.08732492484382 38.0 38.0 40.0 36.0 41.0 18-19 38.11685489981029 38.0 38.0 40.0 36.0 41.0 20-21 38.132543203779726 38.0 38.0 40.0 36.0 41.0 22-23 38.13439115000263 38.0 38.0 40.0 36.0 41.0 24-25 38.11158704369807 38.0 38.0 40.0 36.0 41.0 26-27 38.056319303535155 38.0 38.0 40.0 36.0 41.0 28-29 38.011957821472045 38.0 38.0 40.0 36.0 41.0 30-31 37.90587128509905 38.0 38.0 40.0 36.0 41.0 32-33 37.88543035116433 38.0 38.0 40.0 36.0 41.0 34-35 37.82661976265369 38.0 38.0 40.0 35.0 41.0 36-37 37.78622610677412 38.0 38.0 40.0 35.0 41.0 38-39 37.67599551390654 38.0 38.0 40.0 35.0 41.0 40-41 37.76391609414329 38.0 38.0 40.0 35.0 41.0 42-43 37.74965455139275 38.0 38.0 40.0 35.0 41.0 44-45 37.68887708326246 38.0 38.0 40.0 35.0 41.0 46-47 37.640359008807856 38.0 38.0 40.0 35.0 41.0 48-49 37.605336490870286 38.0 38.0 40.0 35.0 41.0 50-51 37.530295522567926 38.0 38.0 39.0 35.0 41.0 52-53 37.464057704459336 38.0 38.0 39.0 35.0 41.0 54-55 37.39885599137433 38.0 38.0 39.0 34.0 41.0 56-57 37.33684976685268 38.0 38.0 39.0 34.0 41.0 58-59 37.28168031156968 38.0 38.0 38.0 34.0 41.0 60-61 37.210656239833256 38.0 38.0 38.0 34.0 41.0 62-63 37.14723728680662 38.0 37.5 38.0 34.0 41.0 64-65 37.07113736099011 38.0 37.0 38.0 34.0 41.0 66-67 36.95946156177284 38.0 37.0 38.0 34.0 41.0 68-69 36.82710119940643 38.0 37.0 38.0 34.0 40.0 70-71 36.69250000012006 38.0 36.5 38.0 33.0 40.0 72-73 36.56248684622172 38.0 36.0 38.0 33.0 39.0 74-75 36.46169537219011 38.0 36.0 38.0 33.0 39.0 76-77 36.3602678892812 38.0 35.5 38.0 33.0 39.0 78-79 36.2552900828711 38.0 35.0 38.0 33.0 38.0 80-81 36.15378546114246 38.0 35.0 38.0 33.0 38.0 82-83 36.01140034464834 38.0 35.0 38.0 33.0 38.0 84-85 35.92055658091577 38.0 35.0 38.0 33.0 38.0 86-87 35.85957361246459 38.0 35.0 38.0 33.0 38.0 88-89 35.81393002730742 38.0 35.0 38.0 33.0 38.0 90-91 35.762926212072756 38.0 35.0 38.0 33.0 38.0 92-93 35.739196089994124 37.0 35.0 38.0 33.0 38.0 94-95 35.71205202108676 37.0 35.0 38.0 33.0 38.0 96-97 35.701462706862614 37.0 35.0 38.0 33.0 38.0 98-99 35.77722366656298 37.0 35.0 38.0 33.0 38.0 100 33.82015364717455 35.0 32.0 38.0 26.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 4.0 18 45.0 19 70.0 20 158.0 21 361.0 22 1236.0 23 3472.0 24 8208.0 25 16865.0 26 29061.0 27 46716.0 28 67764.0 29 93525.0 30 121814.0 31 153135.0 32 192369.0 33 245042.0 34 334583.0 35 517387.0 36 1088614.0 37 5004211.0 38 1128989.0 39 838899.0 40 89684.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.040150716078685 20.839336928594893 14.267768079082263 25.852744276244156 2 13.775243843781688 20.43368662383473 43.05784715773482 22.73322237464876 3 17.008665218890492 26.791252354439486 31.731282644337334 24.468799782332685 4 11.94959272576601 19.42843558367024 37.704673986262435 30.917297704301316 5 12.631307288208202 37.86380629537623 36.293749226071945 13.211137190343623 6 28.402746672178097 38.268070932755904 18.81330786133275 14.515874533733253 7 24.919905035085907 32.94061146561389 22.616247519462867 19.523235979837334 8 23.581093691348805 36.91066299627147 21.946997123784076 17.561246188595657 9 24.41223330506967 16.72523429723652 20.81572864957917 38.04680374811464 10-11 23.57452390797303 26.708623089189164 29.223874638637394 20.492978364200415 12-13 24.632921968181396 23.78048548367546 28.926735662744026 22.659856885399122 14-15 21.899238270072892 25.38269947669417 25.732641936845162 26.985420316387774 16-17 21.87449566503593 29.19249304136711 26.368402572377548 22.564608721219408 18-19 22.092350078660267 27.655740716846278 28.08945912350904 22.16245008098441 20-21 22.44827300343298 26.687626369954877 27.976946163049394 22.88715446356275 22-23 22.185278301987694 27.881617011543103 27.73116955911813 22.201935127351074 24-25 22.433980450892292 28.29897831296229 27.86242873858923 21.404612497556187 26-27 22.44794808177151 28.69464937829886 27.77375636592448 21.083646174005153 28-29 22.172561609212476 28.105153302974312 27.86882771405216 21.85345737376106 30-31 23.18413154995263 27.542924854552066 27.979944047322665 21.292999548172638 32-33 22.271450608590225 27.79729712245272 28.327901429381903 21.603350839575153 34-35 22.170886598729787 26.770005893094268 28.785327938192477 22.27377956998346 36-37 21.56095843358729 28.03017396214944 28.579525713579056 21.829341890684216 38-39 21.70475576528798 26.53588122182618 29.255674984563584 22.50368802832226 40-41 21.885209309928232 26.463534927259047 29.391886293190666 22.259369469622055 42-43 22.559176843481392 26.230492825490785 29.310729910295823 21.899600420732 44-45 21.686235292936342 27.063418498538606 29.103684955681125 22.14666125284393 46-47 22.712999031111387 26.043372091518645 28.242577597573476 23.001051279796496 48-49 22.34253477299611 26.195446459063533 28.269773346688098 23.19224542125226 50-51 21.58789544836867 26.371552378142727 29.144817396622102 22.8957347768665 52-53 21.822288957459683 26.549400998007844 29.849028387311332 21.77928165722114 54-55 21.74199513092839 26.757681764400548 28.719532256288634 22.780790848382424 56-57 22.67693209410172 27.512256504361112 27.540797069042565 22.270014332494608 58-59 21.290554736161365 28.733482801497257 28.839024698014548 21.136937764326827 60-61 22.255909725517643 29.803724521223884 26.83077836323042 21.109587390028057 62-63 21.224016570191516 30.76840718892258 26.72931809578898 21.27825814509692 64-65 21.25736512254745 30.481956709005487 26.89398029255165 21.36669787589541 66-67 21.44977303728703 30.068680312273816 26.901988134565762 21.57955851587339 68-69 21.562385443743036 29.37705161529892 27.250269587820274 21.810293353137762 70-71 21.846379616165546 28.492338990038927 27.56329054704958 22.097990846745947 72-73 22.183532973566606 27.669103656474103 27.750307792863904 22.397055577095387 74-75 22.122797160622273 27.715056808308 27.77539195969722 22.386754071372508 76-77 22.305941288749263 27.662993805524533 27.58991217003446 22.441152735691748 78-79 22.23833826785255 27.66382155821674 27.591439813177587 22.50640036075312 80-81 22.23161323485382 27.60946952407991 27.66267976211453 22.496237478951738 82-83 22.218598944781753 27.611069650921017 27.766940956894803 22.40339044740243 84-85 22.445658326262258 27.618854310749125 27.605797985378633 22.329689377609988 86-87 22.217960701016825 27.721161325195443 27.658377681596146 22.40250029219158 88-89 22.32303502932516 27.628820195709963 27.649195113099363 22.398949661865515 90-91 22.328013734881434 27.719516572311242 27.64705395829678 22.305415734510543 92-93 22.433178045841533 27.638303571243185 27.631091734972628 22.297426647942654 94-95 22.284750553167466 27.69313818357323 27.661102636042855 22.36100862721645 96-97 22.294222865124276 27.758119419946205 27.788861035310084 22.15879667961944 98-99 23.398763950104502 29.660844055965164 27.94875641113291 18.991635582797425 100 22.39317315033013 30.565785268220143 21.673210775505876 25.367830805943854 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1770.0 1 1637.0 2 2399.5 3 3490.0 4 4402.5 5 6392.0 6 8194.5 7 10362.0 8 12751.0 9 13679.0 10 12838.5 11 11677.5 12 12328.5 13 15133.0 14 21685.5 15 30578.5 16 37822.5 17 41713.5 18 42121.5 19 39875.5 20 36658.5 21 34229.0 22 34928.5 23 40487.5 24 51471.0 25 66629.0 26 85444.0 27 107197.5 28 127765.0 29 149692.0 30 170334.5 31 190001.5 32 213253.0 33 235127.0 34 257428.0 35 278513.0 36 298627.0 37 317920.5 38 331551.0 39 339478.5 40 349864.0 41 361107.5 42 378236.0 43 447638.0 44 505219.5 45 518992.5 46 501870.5 47 457331.0 48 424057.5 49 402052.5 50 392596.5 51 382060.0 52 369170.0 53 350933.5 54 331296.5 55 309120.0 56 283747.0 57 259118.0 58 233525.5 59 206080.5 60 174404.0 61 141912.5 62 112655.5 63 87450.0 64 66953.5 65 51374.0 66 39358.0 67 29981.0 68 22928.0 69 17145.5 70 12835.0 71 9784.0 72 7379.5 73 5298.0 74 3740.5 75 2640.5 76 1858.5 77 1261.5 78 856.5 79 618.0 80 471.0 81 345.0 82 250.5 83 185.5 84 137.0 85 99.0 86 79.5 87 59.0 88 32.0 89 19.5 90 16.5 91 14.0 92 10.0 93 6.0 94 3.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007212829459760075 3 7.012473085877851E-5 4 0.002414294305280803 5 0.006661849431583958 6 0.005349515182655389 7 0.0 8 0.0 9 2.103741925763355E-4 10-11 3.0554347017039207E-4 12-13 3.0053456082333648E-5 14-15 5.0089093470556074E-6 16-17 8.014254955288972E-5 18-19 4.508018412350047E-4 20-21 0.0 22-23 5.510498325885561E-4 24-25 9.319223694637299E-4 26-27 0.0 28-29 0.0013088352800210458 30-31 0.0019532941753922593 32-33 3.624780266575403E-4 34-35 3.0311663003417993E-5 36-37 7.208689008526051E-4 38-39 0.0013440565538113995 40-41 0.0010241693150535751 42-43 1.036898553474673E-5 44-45 0.0 46-47 9.084073469662389E-4 48-49 3.572395555683996E-4 50-51 0.003915436679025571 52-53 0.0016476375370853944 54-55 0.0012834452870824071 56-57 0.0011726599130998444 58-59 0.0012885020519395175 60-61 5.945038122556961E-4 62-63 8.222648917842693E-4 64-65 0.0026633614962764886 66-67 0.0021816131080648637 68-69 0.004432035273772642 70-71 0.002174079186625501 72-73 0.006745943977995979 74-75 0.008038206357383655 76-77 0.0033220692449334494 78-79 0.002821895431408756 80-81 2.776403207094369E-4 82-83 7.18270342330257E-5 84-85 4.620537682729064E-5 86-87 0.0013149282536431188 88-89 0.002964641550862748 90-91 4.1696076071141434E-4 92-93 7.059521176210356E-4 94-95 0.0014312654751194494 96-97 0.001623600136611289 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 212.0 20-21 752.0 22-23 1392.0 24-25 2531.0 26-27 4742.0 28-29 9222.0 30-31 24512.0 32-33 31916.0 34-35 43088.0 36-37 63167.0 38-39 68421.0 40-41 69325.0 42-43 79778.0 44-45 92391.0 46-47 91718.0 48-49 83366.0 50-51 73477.0 52-53 68856.0 54-55 73271.0 56-57 76877.0 58-59 84168.0 60-61 97667.0 62-63 101757.0 64-65 128048.0 66-67 150874.0 68-69 163240.0 70-71 185624.0 72-73 92419.0 74-75 81777.0 76-77 84181.0 78-79 87288.0 80-81 87858.0 82-83 83132.0 84-85 82898.0 86-87 86360.0 88-89 88521.0 90-91 90128.0 92-93 94360.0 94-95 113856.0 96-97 314081.0 98-99 686452.0 100-101 6038510.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.79651553764499 #Duplication Level Percentage of deduplicated Percentage of total 1 87.58328728238305 70.76424431749086 2 7.965396859251241 12.871526222040028 3 2.2837219412261325 5.535503259238139 4 0.9226677548995827 2.981933583793126 5 0.465891002469082 1.8821184809921094 6 0.2577551993918898 1.2495433183545361 7 0.1526559660214495 0.8633849091396375 8 0.09835755130879599 0.635755793805268 9 0.06241578849961786 0.45386804027733646 >10 0.20411657966279148 2.45198816283957 >50 0.002974403939652228 0.16235518814361388 >100 6.886330102281289E-4 0.08975155259214168 >500 4.735893035190938E-5 0.026344890985588253 >1k 2.367900602267335E-5 0.03168228030812574 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.0053456082333648E-5 0.0 0.0 0.0 3 0.0 3.0053456082333648E-5 0.0 1.0017818694111215E-5 0.0 4 0.0 9.016036824700094E-5 0.0 2.003563738822243E-5 0.0 5 1.0017818694111215E-5 1.0017818694111216E-4 0.0 2.003563738822243E-5 0.0 6 1.0017818694111215E-5 1.0017818694111216E-4 0.0 2.003563738822243E-5 0.0 7 1.0017818694111215E-5 1.0017818694111216E-4 0.0 3.0053456082333648E-5 0.0 8 1.0017818694111215E-5 1.2021382432933459E-4 0.0 4.007127477644486E-5 0.0 9 1.0017818694111215E-5 2.4042764865866918E-4 0.0 9.016036824700094E-5 0.0 10-11 3.0053456082333648E-5 2.4042764865866918E-4 0.0 9.016036824700094E-5 0.0 12-13 4.007127477644486E-5 2.4042764865866918E-4 0.0 9.516927759405656E-5 0.0 14-15 4.508018412350047E-5 3.5062365429389255E-4 0.0 1.1019600563522337E-4 0.0 16-17 5.5098002817611684E-5 3.606414729880038E-4 0.0 1.4024946171755702E-4 0.0 18-19 6.0106912164667296E-5 3.7065929168211495E-4 0.0 2.0536528322927992E-4 0.0 20-21 6.0106912164667296E-5 3.95703838417393E-4 0.0 2.3040982996455796E-4 0.0 22-23 6.511582151172291E-5 4.958820253585052E-4 0.0 2.5044546735278036E-4 0.0 24-25 8.014254955288972E-5 5.609978468702281E-4 0.0 3.2557910755861446E-4 0.0 26-27 9.016036824700094E-5 5.910513029525617E-4 0.0 4.4078402254089347E-4 0.0 28-29 9.016036824700094E-5 5.910513029525617E-4 0.0 0.0011219956937404561 0.0 30-31 9.016036824700094E-5 6.411403964231178E-4 0.0 0.003386022718609591 0.0 32-33 1.0017818694111216E-4 6.51158215117229E-4 0.0 0.008344842972194642 0.0 34-35 1.1019600563522337E-4 7.763809487936192E-4 0.0 0.01532726260199016 0.0 36-37 1.2021382432933459E-4 9.016036824700094E-4 0.0 0.02573076731582466 0.0 38-39 1.2021382432933459E-4 9.516927759405655E-4 0.0 0.051716989008349146 0.0 40-41 1.2021382432933459E-4 0.0010318353254934551 0.0 0.0772674355876798 0.0 42-43 1.2021382432933459E-4 0.0010618887815757889 0.0 0.09402724626292787 0.0 44-45 1.3023164302344582E-4 0.001227182790028624 0.0 0.11511976352337903 0.0 46-47 1.4024946171755702E-4 0.0013724411610932365 0.0 0.13632748569881248 0.0 48-49 1.4525837106461263E-4 0.0013824589797873476 0.0 0.15367333876766603 0.0 50-51 1.5026728041166824E-4 0.0015677886256284053 0.0 0.1699372674175556 0.0 52-53 1.6028509910577944E-4 0.0015978420817107388 0.0 0.21961563032165313 0.0 54-55 1.6028509910577944E-4 0.0016128688097519057 0.0 0.2762864306742403 0.0 56-57 1.6028509910577944E-4 0.0016329044471401282 0.0 0.3575559848302175 0.0 58-59 1.803207364940019E-4 0.0016429222658342394 0.0 0.40116855851503064 0.0 60-61 1.803207364940019E-4 0.0016880024499577398 0.0 0.4175176386238202 0.0 62-63 1.803207364940019E-4 0.0017080380873459623 0.0 0.4282667580826015 0.0 64-65 1.803207364940019E-4 0.0018833499144929086 0.0 0.4339719058288979 0.0 66-67 1.803207364940019E-4 0.0018983766425340752 0.0 0.43888063698901236 0.0 68-69 1.9033855518811309E-4 0.0019434568266575758 0.0 0.44380439487716805 0.0 70-71 1.9033855518811309E-4 0.001953474645351687 0.0 0.44831241328951804 0.0 72-73 2.003563738822243E-4 0.001963492464045798 0.0 0.45203904184372745 0.0 74-75 2.003563738822243E-4 0.0020336171949045766 0.0 0.45491415580893735 0.0 76-77 2.003563738822243E-4 0.0021438132005398 0.0 0.45764401140308264 0.0 78-79 2.2039201127044673E-4 0.0021638488379280224 0.0 0.4594522276773697 0.0 80-81 2.2039201127044673E-4 0.0021638488379280224 0.0 0.46011340371118103 0.0 82-83 2.3040982996455796E-4 0.0021688577472750784 0.0 0.4606844193767454 0.0 84-85 2.4042764865866918E-4 0.002173866656622134 0.0 0.46090982029736294 0.0 86-87 2.4042764865866918E-4 0.0022139379313985785 0.0 0.46098996284691585 0.0 88 2.4042764865866918E-4 0.0023141161183396907 0.0 0.46099998066560993 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 26520 0.0 56.563885 1 GGTATCA 12400 0.0 50.79076 1 TTATACA 31655 0.0 47.692085 2 TATACAC 32475 0.0 47.438644 3 GTATCAA 22860 0.0 37.173107 1 TACACAT 45440 0.0 33.985706 5 ATACACA 47530 0.0 32.949436 4 ACACATC 50565 0.0 30.108944 6 ATCAACG 27545 0.0 30.074854 3 TCAACGC 27675 0.0 29.994173 4 CAACGCA 28045 0.0 29.568043 5 ACATCTC 51400 0.0 29.552666 8 CACATCT 52405 0.0 28.92209 7 TATCAAC 29000 0.0 28.841206 2 AACGCAG 29065 0.0 28.585934 6 CATCTCC 55835 0.0 27.055515 9 CGCAGAG 33935 0.0 24.407932 8 ACGCAGA 34080 0.0 24.291815 7 GTGGTAT 5650 0.0 21.53902 1 GCAGAGT 39110 0.0 21.167606 9 >>END_MODULE