##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138954_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4602548 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43818619599404 34.0 31.0 34.0 31.0 34.0 2 32.56921318365392 34.0 31.0 34.0 31.0 34.0 3 32.61419174770149 34.0 31.0 34.0 31.0 34.0 4 36.14289671720969 37.0 35.0 37.0 35.0 37.0 5 36.05393338646332 37.0 35.0 37.0 35.0 37.0 6 36.06809814911219 37.0 35.0 37.0 35.0 37.0 7 36.029465852393066 37.0 35.0 37.0 35.0 37.0 8 36.026664360697595 37.0 35.0 37.0 35.0 37.0 9 37.75314065165643 39.0 38.0 39.0 35.0 39.0 10-11 37.68295333367517 39.0 38.0 39.0 35.0 39.0 12-13 37.66429041044222 39.0 37.0 39.0 35.0 39.0 14-15 39.08286594729702 41.0 38.0 41.0 36.0 41.0 16-17 39.05713128901643 41.0 38.0 41.0 35.0 41.0 18-19 39.06672401895646 41.0 38.5 41.0 35.0 41.0 20-21 39.05096017492558 41.0 39.0 41.0 35.0 41.0 22-23 39.03456660609153 41.0 39.0 41.0 35.0 41.0 24-25 38.99242995265058 41.0 39.0 41.0 35.0 41.0 26-27 38.93236374739544 41.0 38.0 41.0 35.0 41.0 28-29 38.874198263482455 40.5 38.0 41.0 35.0 41.0 30-31 38.79398122440226 40.0 38.0 41.0 34.5 41.0 32-33 38.69962863835539 40.0 38.0 41.0 34.0 41.0 34-35 38.62428723906818 40.0 38.0 41.0 34.0 41.0 36-37 38.601208082473875 40.0 38.0 41.0 34.0 41.0 38-39 38.552407049190656 40.0 38.0 41.0 34.0 41.0 40-41 38.534955759069604 40.0 38.0 41.0 34.0 41.0 42-43 38.481666819211995 40.0 38.0 41.0 34.0 41.0 44-45 38.39090918519493 40.0 38.0 41.0 33.0 41.0 46-47 38.34224379889354 40.0 38.0 41.0 33.0 41.0 48-49 38.28821021685422 40.0 38.0 41.0 33.0 41.0 50-51 38.22843743661299 40.0 38.0 41.0 33.0 41.0 52-53 38.10288049723886 40.0 37.0 41.0 33.0 41.0 54-55 37.97872332530372 40.0 37.0 41.0 33.0 41.0 56-57 37.85329135288013 40.0 37.0 41.0 33.0 41.0 58-59 37.739480853732715 40.0 36.0 41.0 32.0 41.0 60-61 37.6090094869744 39.5 36.0 41.0 32.0 41.0 62-63 37.40179343162889 39.0 35.5 41.0 32.0 41.0 64-65 37.19543918433596 39.0 35.0 41.0 32.0 41.0 66-67 36.97398680870455 38.5 35.0 41.0 32.0 41.0 68-69 36.65276773964655 37.5 35.0 40.0 31.0 41.0 70-71 36.33067521596749 37.0 35.0 40.0 31.0 41.0 72-73 36.031182319383475 37.0 35.0 39.0 31.0 41.0 74-75 35.766642681783686 36.0 35.0 39.0 31.0 41.0 76-77 35.47564328947516 36.0 34.5 39.0 31.0 40.5 78-79 35.207372419459254 35.0 34.0 37.5 31.0 39.5 80-81 34.92393911477928 35.0 34.0 37.0 31.0 39.0 82-83 34.6180465828092 35.0 34.0 37.0 31.0 39.0 84-85 34.386752559137975 35.0 34.0 36.0 30.0 37.5 86-87 34.22091974119969 35.0 34.0 36.0 31.0 37.0 88-89 34.074745161230226 35.0 34.0 36.0 31.0 37.0 90-91 33.93562019699782 35.0 34.0 35.0 30.0 36.0 92-93 33.88388547716508 35.0 34.0 35.0 31.0 36.0 94-95 33.82921890675429 35.0 34.0 35.0 31.0 36.0 96-97 33.821711159225984 35.0 34.0 35.0 31.0 36.0 98-99 33.97018081274079 35.0 34.0 35.0 31.0 36.0 100 31.195416333307588 33.0 29.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 6.0 19 32.0 20 54.0 21 147.0 22 584.0 23 1993.0 24 5233.0 25 10924.0 26 20118.0 27 32151.0 28 46493.0 29 62904.0 30 81008.0 31 101295.0 32 125658.0 33 158415.0 34 206119.0 35 285128.0 36 416092.0 37 772127.0 38 1255484.0 39 935521.0 40 85060.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.20394790016313 20.795329022098194 14.85768317896956 24.143039898769118 2 14.729671914182676 21.428343278850456 41.07203425461639 22.769950552350473 3 17.827073274121087 26.28590436713301 30.837587688013073 25.04943467073283 4 12.67721705455326 18.51667815305783 38.77232784970412 30.033776942684792 5 13.017847783629305 37.863307220208135 35.87724803065083 13.241596965511725 6 29.489622125327198 38.33707590739856 18.866375981583666 13.306925985690576 7 25.90699760219774 32.97697275509131 23.58030812497773 17.535721517733222 8 24.038793294496873 37.012606929900564 21.358212885558174 17.590386890044385 9 25.29581440541196 16.939921104570775 21.674385579465984 36.089878910551285 10-11 23.894956846172004 26.99005865557252 29.150873326320546 19.964111171934928 12-13 24.651774332777045 24.60396384871246 29.339885067985183 21.404376750525305 14-15 21.88070607845915 25.958794997901162 26.99404764491321 25.16645127872648 16-17 21.345081778792483 28.97274286491497 27.760020666858154 21.922154689434397 18-19 21.395064058044035 28.18273655512199 29.425787758428534 20.996411628405443 20-21 22.191634706037902 27.241732733601214 29.46676177900635 21.099870781354536 22-23 21.992570865911585 27.157846607265757 29.220797142219478 21.62878538460318 24-25 21.74844822095638 27.26859716565968 29.308891794455437 21.674062818928498 26-27 21.6931229588538 27.505957205549198 29.19529826043291 21.60562157516409 28-29 21.65266237812874 27.56082939976755 29.215076121965332 21.57143210013838 30-31 21.910918553938348 27.305603008389834 29.124653746856183 21.658824690815635 32-33 21.749373758290307 27.45304265915595 29.07490791398452 21.722675668569217 34-35 21.855516208475954 27.458606105044648 29.081930703107105 21.603946983372296 36-37 21.871512725705614 27.470321110832053 28.956910874091307 21.701255289371026 38-39 21.781966980672262 27.541263082335632 29.008345666102457 21.668424270889645 40-41 21.988598337720333 27.43805143660365 28.867652538991805 21.70569768668421 42-43 21.86408553381251 27.523800260874626 28.710752845889676 21.90136135942319 44-45 22.011420048781858 27.58672103792422 28.497653358760566 21.904205554533352 46-47 22.040232824969976 27.6688275141968 28.22882599443961 22.062113666393614 48-49 22.03140399424607 27.768294444219784 28.150422590540675 22.04987897099348 50-51 21.98258210452835 27.892068715963376 28.032183366877096 22.09316581263118 52-53 22.022899410353798 27.808320028321422 27.993968081587482 22.174812479737295 54-55 22.097266288441062 27.770969559282637 27.985277695507698 22.146486456768603 56-57 22.061214417007 27.728450895240332 27.989506317784258 22.22082836996842 58-59 21.97202570434629 27.760996206517426 28.006207822210964 22.260770266925324 60-61 22.1842875633135 27.65821898889943 28.167891239968178 21.989602207818887 62-63 21.946344048685102 27.726932144227785 28.115340801793405 22.211383005293715 64-65 21.92843220425438 27.756089250916986 28.031031377744103 22.284447167084526 66-67 21.981655779811778 27.85005898235642 27.99636699460013 22.171918243231673 68-69 21.94053913878124 27.987598000649506 27.86660869340698 22.205254167162273 70-71 21.909909129939933 27.781439987686873 27.803957515664806 22.504693366708388 72-73 22.04271971836333 27.692415062326383 27.712687544425947 22.552177674884348 74-75 21.943941961109857 27.854514038386284 27.887786350969467 22.313757649534395 76-77 22.123392214095553 27.622728667882406 27.733402282682423 22.52047683533962 78-79 22.027370548806612 27.597118953412505 27.57895854960314 22.796551948177747 80-81 22.208482672642237 27.858742504715888 27.579433853264007 22.353340969377864 82-83 22.208644596436592 27.668961372268537 27.696586779827527 22.425807251467347 84-85 22.176061796894704 27.694515664575913 27.5782213690189 22.551201169510485 86-87 22.036655992519275 27.93390188606009 27.63844688950052 22.39099523192011 88-89 22.271919474265275 27.895456417801483 27.60298466309375 22.229639444839492 90-91 22.364266942586838 27.900749613613257 27.555797554413335 22.17918588938657 92-93 22.200128528327706 27.6100470037443 27.749343378540015 22.44048108938798 94-95 22.217907348969074 27.922448273008005 27.76418390316861 22.095460474854313 96-97 22.439562331429677 27.818580848785103 27.90160259570886 21.840254224076368 98-99 23.129181637431376 29.830722052692515 28.254815085103257 18.785281224772852 100 22.196470799161812 30.903680071658325 21.658253852733356 25.241595276446503 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1059.0 1 864.5 2 1064.5 3 1482.0 4 1838.0 5 3023.0 6 4126.0 7 5051.0 8 5660.0 9 5533.5 10 4851.5 11 3897.5 12 3836.5 13 5076.0 14 8822.5 15 14471.0 16 19383.0 17 22498.0 18 23785.5 19 23420.0 20 21873.0 21 20062.0 22 19556.0 23 21415.0 24 25595.0 25 32188.5 26 40704.0 27 50202.0 28 60586.0 29 72289.5 30 83630.5 31 94384.5 32 105102.5 33 115719.0 34 126330.5 35 135407.0 36 144105.0 37 153137.5 38 160714.5 39 166142.0 40 172002.5 41 177694.5 42 180503.0 43 182151.0 44 184580.5 45 187906.0 46 188503.0 47 187517.0 48 186657.5 49 183807.0 50 180823.5 51 176423.0 52 169226.0 53 160981.0 54 152174.5 55 140724.5 56 128344.0 57 116700.5 58 104484.0 59 91593.0 60 76401.0 61 61712.0 62 49587.0 63 39214.0 64 30673.0 65 24003.0 66 18728.5 67 14488.5 68 11312.5 69 8665.5 70 6664.5 71 5145.5 72 3936.0 73 3009.5 74 2310.0 75 1773.0 76 1312.0 77 959.5 78 733.5 79 581.0 80 449.0 81 334.5 82 252.0 83 177.5 84 122.5 85 81.0 86 56.0 87 43.0 88 32.5 89 22.5 90 13.5 91 9.5 92 8.5 93 4.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006670218322546555 3 1.9554385961862865E-4 4 0.0 5 0.011298089666854099 6 0.011862994150196805 7 0.0 8 0.0 9 0.0 10-11 3.259064326977144E-5 12-13 2.172709551318096E-5 14-15 0.0 16-17 2.172709551318096E-4 18-19 9.234015593101908E-4 20-21 0.0 22-23 1.955832095726246E-4 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 6.576109258109658E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.006350963569358057 52-53 4.695193882162372E-5 54-55 0.0 56-57 0.0 58-59 0.0 60-61 2.4154504772869756E-5 62-63 9.137510393918074E-4 64-65 0.0012413970264239346 66-67 9.927501935242408E-4 68-69 0.00993835961170967 70-71 6.961525672777662E-4 72-73 3.7068083332119034E-4 74-75 2.452181492921649E-4 76-77 5.215530493772526E-5 78-79 0.0 80-81 5.330569255488721E-5 82-83 0.0 84-85 0.0 86-87 9.648625987416262E-5 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 157.0 20-21 548.0 22-23 1083.0 24-25 1919.0 26-27 2911.0 28-29 4654.0 30-31 10965.0 32-33 14040.0 34-35 19111.0 36-37 26603.0 38-39 28693.0 40-41 31465.0 42-43 36690.0 44-45 43507.0 46-47 42894.0 48-49 38042.0 50-51 32126.0 52-53 30349.0 54-55 31321.0 56-57 34605.0 58-59 21725.0 60-61 36398.0 62-63 35472.0 64-65 38100.0 66-67 39643.0 68-69 39365.0 70-71 39064.0 72-73 37429.0 74-75 38958.0 76-77 40393.0 78-79 41792.0 80-81 41914.0 82-83 40924.0 84-85 41492.0 86-87 43732.0 88-89 46097.0 90-91 48490.0 92-93 52792.0 94-95 67854.0 96-97 182459.0 98-99 374490.0 100-101 2822282.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.37068362828232 #Duplication Level Percentage of deduplicated Percentage of total 1 90.67721147496974 79.22529956074432 2 6.817539004435985 11.913060869601027 3 1.538317387280806 4.0321152529199145 4 0.4854206972741498 1.696461526726398 5 0.20069125681462374 0.8767266153056427 6 0.10647633243221669 0.5581745972901012 7 0.05887482129386647 0.3600753369456646 8 0.03555405177481364 0.248510544745665 9 0.021960165700359437 0.1726807220847685 >10 0.0563374464876969 0.7185795906610944 >50 9.037259273325032E-4 0.05069161864046132 >100 7.136356083835014E-4 0.14762376433499597 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.345419102636192E-5 2 2.172709551318096E-5 0.0 0.0 0.0 4.345419102636192E-5 3 2.172709551318096E-5 0.0 0.0 0.0 4.345419102636192E-5 4 2.172709551318096E-5 4.345419102636192E-5 0.0 0.0 4.345419102636192E-5 5 2.172709551318096E-5 4.345419102636192E-5 0.0 2.172709551318096E-5 4.345419102636192E-5 6 2.172709551318096E-5 4.345419102636192E-5 0.0 2.172709551318096E-5 4.345419102636192E-5 7 2.172709551318096E-5 4.345419102636192E-5 0.0 6.518128653954288E-5 4.345419102636192E-5 8 2.172709551318096E-5 4.345419102636192E-5 0.0 6.518128653954288E-5 6.518128653954288E-5 9 2.172709551318096E-5 4.345419102636192E-5 0.0 6.518128653954288E-5 6.518128653954288E-5 10-11 2.172709551318096E-5 4.345419102636192E-5 0.0 6.518128653954288E-5 6.518128653954288E-5 12-13 2.172709551318096E-5 4.345419102636192E-5 0.0 6.518128653954288E-5 6.518128653954288E-5 14-15 2.172709551318096E-5 6.518128653954288E-5 0.0 6.518128653954288E-5 6.518128653954288E-5 16-17 2.172709551318096E-5 6.518128653954288E-5 0.0 6.518128653954288E-5 6.518128653954288E-5 18-19 2.172709551318096E-5 6.518128653954288E-5 0.0 7.604483429613336E-5 6.518128653954288E-5 20-21 2.172709551318096E-5 6.518128653954288E-5 0.0 8.690838205272384E-5 7.604483429613336E-5 22-23 3.259064326977144E-5 8.690838205272384E-5 0.0 1.5208966859226673E-4 1.086354775659048E-4 24-25 6.518128653954288E-5 8.690838205272384E-5 0.0 2.4986159840158104E-4 1.3036257307908576E-4 26-27 6.518128653954288E-5 8.690838205272384E-5 0.0 4.019512669938477E-4 1.3036257307908576E-4 28-29 6.518128653954288E-5 8.690838205272384E-5 0.0 9.885828458497336E-4 1.3036257307908576E-4 30-31 6.518128653954288E-5 8.690838205272384E-5 0.0 0.0037261968805105345 1.3036257307908576E-4 32-33 6.518128653954288E-5 1.086354775659048E-4 0.0 0.010081372318115966 1.3036257307908576E-4 34-35 6.518128653954288E-5 1.086354775659048E-4 0.0 0.01876134697563176 1.3036257307908576E-4 36-37 6.518128653954288E-5 1.086354775659048E-4 0.0 0.03370958868870026 1.3036257307908576E-4 38-39 6.518128653954288E-5 1.086354775659048E-4 0.0 0.07287267835120895 1.3036257307908576E-4 40-41 6.518128653954288E-5 1.3036257307908576E-4 0.0 0.11384998048906822 1.3036257307908576E-4 42-43 6.518128653954288E-5 1.3036257307908576E-4 0.0 0.1382060545593441 1.3036257307908576E-4 44-45 6.518128653954288E-5 1.5208966859226673E-4 0.0 0.17111174071405666 1.4122612083567626E-4 46-47 6.518128653954288E-5 1.7381676410544767E-4 0.0 0.20302884402291949 1.7381676410544767E-4 48-49 6.518128653954288E-5 1.7381676410544767E-4 0.0 0.22838436448680166 1.9554385961862865E-4 50-51 6.518128653954288E-5 1.9554385961862865E-4 0.0 0.2527187114615643 1.9554385961862865E-4 52-53 6.518128653954288E-5 1.9554385961862865E-4 0.0 0.334564680259717 2.0640740737521912E-4 54-55 6.518128653954288E-5 1.9554385961862865E-4 0.0 0.43093521240843113 2.172709551318096E-4 56-57 9.777192980931431E-5 1.9554385961862865E-4 0.0 0.5478813040081276 2.172709551318096E-4 58-59 1.3036257307908576E-4 1.9554385961862865E-4 0.0 0.7647503078729434 2.172709551318096E-4 60-61 1.3036257307908576E-4 1.9554385961862865E-4 0.0 0.9386865710037136 2.172709551318096E-4 62-63 1.3036257307908576E-4 2.172709551318096E-4 0.0 0.9450634735368322 2.3899805064499057E-4 64-65 1.3036257307908576E-4 2.607251461581715E-4 0.0 0.9510166977074438 2.3899805064499057E-4 66-67 1.3036257307908576E-4 2.607251461581715E-4 0.0 0.9559596119366924 2.3899805064499057E-4 68-69 1.3036257307908576E-4 2.71588693914762E-4 0.0 0.9614782941970403 2.3899805064499057E-4 70-71 1.3036257307908576E-4 2.8245224167135246E-4 0.0 0.9662691187576968 2.607251461581715E-4 72-73 1.3036257307908576E-4 2.8245224167135246E-4 0.0 0.9695173195369173 3.0417933718453346E-4 74-75 1.3036257307908576E-4 2.8245224167135246E-4 0.0 0.9726460212908155 3.0417933718453346E-4 76-77 1.3036257307908576E-4 2.8245224167135246E-4 0.0 0.975948539808819 3.1504288494112393E-4 78-79 1.3036257307908576E-4 2.8245224167135246E-4 0.0 0.9777627522841695 3.259064326977144E-4 80-81 1.5208966859226673E-4 2.8245224167135246E-4 0.0 0.9782842025764859 3.259064326977144E-4 82-83 1.7381676410544767E-4 2.8245224167135246E-4 0.0 0.9792076041357961 3.693606237240763E-4 84-85 1.7381676410544767E-4 2.8245224167135246E-4 2.172709551318096E-5 0.9794357386386845 3.693606237240763E-4 86-87 1.9554385961862865E-4 2.8245224167135246E-4 2.172709551318096E-5 0.9795443741162504 3.693606237240763E-4 88 1.9554385961862865E-4 2.8245224167135246E-4 2.172709551318096E-5 0.9795443741162504 3.693606237240763E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5870 0.0 50.113663 1 GTATCAA 10280 0.0 36.16107 1 TCAACGC 12660 0.0 28.757544 4 ATCAACG 12780 0.0 28.520683 3 CAACGCA 12935 0.0 28.178919 5 TATCAAC 13410 0.0 27.46792 2 AACGCAG 13370 0.0 27.38712 6 ACGCAGA 15205 0.0 23.9681 7 CGCAGAG 15505 0.0 23.449688 8 GTGGTAT 2685 0.0 23.206402 1 GTACATG 12605 0.0 20.176376 1 GCAGAGT 18115 0.0 20.024282 9 TGGTATC 2740 0.0 19.95602 2 AGACCGA 4320 0.0 19.445827 88-89 TACATGG 12570 0.0 19.389532 2 GAGTACT 11380 0.0 19.382484 12-13 ACCGAGG 4455 0.0 19.376099 90-91 ACATGGG 12350 0.0 19.149591 3 CGAGACC 4545 0.0 19.048693 86-87 GACCGAG 4290 0.0 18.897738 90-91 >>END_MODULE