##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138953_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9302547 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4469944629143 34.0 31.0 34.0 31.0 34.0 2 32.577958703137966 34.0 31.0 34.0 31.0 34.0 3 32.622840067349294 34.0 31.0 34.0 31.0 34.0 4 36.14897156660429 37.0 35.0 37.0 35.0 37.0 5 36.059449094962915 37.0 35.0 37.0 35.0 37.0 6 36.07410776854984 37.0 35.0 37.0 35.0 37.0 7 36.03050293645386 37.0 35.0 37.0 35.0 37.0 8 36.02694778107544 37.0 35.0 37.0 35.0 37.0 9 37.7568297155607 39.0 38.0 39.0 35.0 39.0 10-11 37.686188470748924 39.0 38.0 39.0 35.0 39.0 12-13 37.66490042995751 39.0 37.0 39.0 35.0 39.0 14-15 39.08733264126481 41.0 38.0 41.0 36.0 41.0 16-17 39.06099286571731 41.0 38.0 41.0 35.0 41.0 18-19 39.06659133245981 41.0 38.5 41.0 35.0 41.0 20-21 39.05231470175329 41.0 39.0 41.0 35.0 41.0 22-23 39.03809953467677 41.0 39.0 41.0 35.0 41.0 24-25 38.99327943635319 41.0 39.0 41.0 35.0 41.0 26-27 38.92644201186097 41.0 38.0 41.0 35.0 41.0 28-29 38.864118531318596 40.5 38.0 41.0 35.0 41.0 30-31 38.78946893312833 40.0 38.0 41.0 34.5 41.0 32-33 38.69532499608623 40.0 38.0 41.0 34.0 41.0 34-35 38.6168072382095 40.0 38.0 41.0 34.0 41.0 36-37 38.593738917354074 40.0 38.0 41.0 34.0 41.0 38-39 38.5373353904557 40.0 38.0 41.0 34.0 41.0 40-41 38.520827318335634 40.0 38.0 41.0 34.0 41.0 42-43 38.47122448163127 40.0 38.0 41.0 34.0 41.0 44-45 38.38335142241887 40.0 38.0 41.0 33.0 41.0 46-47 38.336615450310674 40.0 38.0 41.0 33.0 41.0 48-49 38.28849876221932 40.0 38.0 41.0 33.0 41.0 50-51 38.21558918658206 40.0 38.0 41.0 33.0 41.0 52-53 38.095927247888454 40.0 37.0 41.0 33.0 41.0 54-55 37.97540350529258 40.0 37.0 41.0 33.0 41.0 56-57 37.84892375868523 40.0 37.0 41.0 33.0 41.0 58-59 37.73752070899225 40.0 36.0 41.0 32.0 41.0 60-61 37.59533205160543 39.5 36.0 41.0 32.0 41.0 62-63 37.39781671155349 39.0 35.5 41.0 32.0 41.0 64-65 37.19260773907011 39.0 35.0 41.0 32.0 41.0 66-67 36.964482497603925 38.5 35.0 41.0 32.0 41.0 68-69 36.642216533929734 37.5 35.0 40.0 31.0 41.0 70-71 36.32623193755964 37.0 35.0 40.0 31.0 41.0 72-73 36.02963373760849 37.0 35.0 39.0 31.0 41.0 74-75 35.76741401333482 36.0 35.0 39.0 31.0 41.0 76-77 35.47924764476219 36.0 35.0 39.0 31.0 40.5 78-79 35.20722022104965 35.0 34.0 37.5 31.0 39.5 80-81 34.93051542258726 35.0 34.0 37.0 31.0 39.0 82-83 34.63490560701936 35.0 34.0 36.5 31.0 39.0 84-85 34.401754133742116 35.0 34.0 36.0 31.0 37.5 86-87 34.23529207723881 35.0 34.0 36.0 31.0 37.0 88-89 34.096518091470145 35.0 34.0 36.0 31.0 37.0 90-91 33.96288970074286 35.0 34.0 35.0 31.0 36.0 92-93 33.90756838150197 35.0 34.0 35.0 31.0 36.0 94-95 33.85510521686621 35.0 34.0 35.0 31.0 36.0 96-97 33.853340873833616 35.0 34.0 35.0 31.0 36.0 98-99 33.98865930858586 35.0 34.0 35.0 31.0 36.0 100 31.21799328677301 33.0 29.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 17.0 19 45.0 20 107.0 21 322.0 22 1253.0 23 4276.0 24 10889.0 25 23023.0 26 40752.0 27 64807.0 28 93493.0 29 126244.0 30 161830.0 31 202514.0 32 251959.0 33 315890.0 34 411672.0 35 566470.0 36 829528.0 37 1541721.0 38 2532739.0 39 1924338.0 40 198655.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 40.072122183311734 20.787414457567372 14.799688730408993 24.340774628711902 2 14.600768786857952 21.326976514976252 41.295019699141946 22.777234999023857 3 17.71873697599073 26.18614224451389 31.1186278229011 24.97649295659429 4 12.5108317109282 18.713487822206112 38.49963886234598 30.276041604519712 5 12.958473059480118 37.8619297818595 35.88778101834451 13.29181614031587 6 29.375554221458078 38.43104904499741 18.731223127516305 13.46217360602821 7 25.77605896535648 32.97771029805063 23.340973176485967 17.90525756010693 8 23.92827469724152 37.09130413423335 21.415951996802598 17.564469171722543 9 24.978632196107153 16.93917805521434 21.506475592114718 36.57571415656379 10-11 23.77803420710351 26.96967812505862 29.192533029817714 20.05975463802016 12-13 24.581070265237646 24.542080932802847 29.226799183814705 21.6500496181448 14-15 21.873784774953826 25.944772219090762 26.749476608367395 25.431966397588013 16-17 21.472238151293034 29.09188028388211 27.507229624305708 21.92865194051915 18-19 21.548520679399804 28.056636931834916 29.211542856577722 21.183299532187554 20-21 22.201426149514567 27.159349041117096 29.177819322143588 21.46140548722475 22-23 21.852556966587446 27.28025076765526 29.07780890433336 21.78938336142393 24-25 21.827038537753985 27.390150058749036 29.145775581373464 21.637035822123515 26-27 21.6698062483396 27.501906936752107 29.17214035614014 21.65614645876815 28-29 21.443439087486013 27.316458942986827 29.24030247140641 21.999799498120755 30-31 21.771370035115087 27.14892205520445 29.24132875398136 21.8383791556991 32-33 21.62194319901751 27.36557146581029 29.167500525182206 21.84498480999 34-35 21.72451890068198 27.588533454452012 29.20415620208962 21.482791442776385 36-37 21.804601851258322 27.391871844817683 28.905143832925397 21.898382470998595 38-39 21.776258909045897 27.369446012095377 29.041659840389666 21.81263523846906 40-41 21.90766133865753 27.244453991850893 29.01857862783837 21.829306041653208 42-43 21.971022034920345 27.30723559128717 28.8644708066364 21.85727156715608 44-45 21.856680659273376 27.526896239557686 28.66180506312975 21.95461803803919 46-47 22.14975287437153 27.38520769491954 28.217402360870192 22.247637069838742 48-49 22.055111595580723 27.55013620252958 28.223532119950555 22.17122008193914 50-51 21.890238123187554 27.69096013019894 28.239905741999156 22.17889600461435 52-53 21.992875359599427 27.716381691963544 28.24134073352437 22.04940221491266 54-55 21.991243632605237 27.67789389604572 28.10733316433611 22.223529307012928 56-57 22.126392180341586 27.84520775728778 27.89934760795535 22.129052454415284 58-59 21.841667762119663 28.061700961708553 28.198030011865754 21.89860126430603 60-61 22.095239020958587 28.1606386568814 27.8469296288545 21.897192693305517 62-63 21.917531654672327 28.331837915948192 27.772635500805638 21.977994928573843 64-65 21.841105726295307 28.277312037430125 27.828990293993076 22.05259194228149 66-67 21.99202894592604 28.235123492949043 27.65942579027765 22.113421770847264 68-69 21.918629138052147 28.108514490081287 27.791781603728715 22.181074768137844 70-71 21.967681236543992 27.749907668589042 27.89227259195365 22.390138502913317 72-73 22.077898293211813 27.64670070505863 27.86722746002594 22.40817354170361 74-75 21.917761100214015 27.805696842165467 27.89482552200999 22.38171653561052 76-77 22.09453562883903 27.752003154813853 27.765521500168376 22.38793971617874 78-79 22.012733969793423 27.778557444688477 27.796228145411717 22.41248044010638 80-81 22.058506321847286 27.77779789561226 27.768177774911173 22.395518007629274 82-83 22.076050889740053 27.79224751485207 27.84580837805389 22.285893217353998 84-85 22.196461745095863 27.806817583028664 27.754936930391917 22.241783741483555 86-87 22.04307895622158 27.78117542311451 27.861471859013342 22.31427376165056 88-89 22.02558102992808 27.74259866911617 27.871650449838558 22.36016985111719 90-91 22.07977353658861 27.768226222642074 27.874052226487954 22.27794801428136 92-93 22.08006753425551 27.74629277194865 27.936741093782796 22.236898600013046 94-95 21.920076719536176 27.907969474358378 27.954424295063383 22.217529511042063 96-97 22.015356800105966 27.99074772987308 27.997285534476745 21.99660993554421 98-99 23.014828408767613 29.87714265652357 28.20536717910248 18.902661755606335 100 22.111863067894564 30.814264884065818 21.717130008483547 25.356742039556075 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2879.0 1 2243.5 2 2270.5 3 3012.5 4 3833.5 5 6336.0 6 8598.5 7 10338.0 8 11621.5 9 11517.5 10 10081.0 11 8205.0 12 8223.0 13 10862.5 14 18801.0 15 30511.5 16 40157.5 17 45797.5 18 47790.0 19 46654.5 20 43596.0 21 40457.5 22 39834.5 23 43810.5 24 52832.0 25 67123.5 26 85911.5 27 106565.5 28 127076.5 29 149410.5 30 171243.0 31 191668.5 32 213040.0 33 233826.5 34 253797.5 35 271539.5 36 291474.0 37 311828.5 38 326270.0 39 337112.5 40 348954.0 41 359914.0 42 367034.5 43 376309.5 44 390924.0 45 406501.5 46 408539.0 47 403929.5 48 396755.0 49 383734.0 50 373687.0 51 362792.5 52 347631.0 53 327580.5 54 306928.5 55 285878.0 56 263473.5 57 238917.5 58 213605.0 59 186679.5 60 156037.5 61 127681.5 62 102607.0 63 80306.5 64 61706.5 65 46863.0 66 35241.5 67 27066.5 68 21069.0 69 16198.5 70 12540.0 71 9708.5 72 7437.0 73 5573.0 74 4170.0 75 3134.0 76 2361.0 77 1760.5 78 1307.5 79 991.0 80 744.5 81 545.0 82 420.5 83 310.5 84 226.5 85 155.0 86 111.0 87 90.0 88 60.5 89 36.5 90 26.0 91 17.0 92 12.0 93 7.5 94 3.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006654091615984311 3 1.7199590606744583E-4 4 0.0 5 0.010953989267670456 6 0.013017940140479805 7 0.0 8 0.0 9 0.0 10-11 5.91235927106845E-5 12-13 2.6874360323038412E-5 14-15 5.374872064607682E-6 16-17 2.5261898703656107E-4 18-19 0.0010857241570507517 20-21 0.0 22-23 1.1289628207813454E-4 24-25 0.0 26-27 5.379987726096002E-6 28-29 0.0 30-31 0.0 32-33 0.0 34-35 8.679224383282794E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.341669499195688E-5 44-45 0.0 46-47 5.682681561960038E-6 48-49 0.0 50-51 0.006445765117826209 52-53 7.015428564346329E-5 54-55 1.1793244841148236E-5 56-57 0.0 58-59 0.0 60-61 4.860030218452891E-5 62-63 0.0010496559706518647 64-65 0.0013958677104531135 66-67 9.982553134022557E-4 68-69 0.01000062241636018 70-71 8.24438309535621E-4 72-73 3.9756704609770344E-4 74-75 3.0311303012409775E-4 76-77 7.999014521410963E-5 78-79 0.0 80-81 8.198959784307232E-5 82-83 0.0 84-85 0.0 86-87 1.1358337150799459E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 329.0 20-21 1177.0 22-23 2224.0 24-25 3804.0 26-27 6099.0 28-29 10072.0 30-31 23046.0 32-33 29347.0 34-35 40269.0 36-37 57323.0 38-39 64782.0 40-41 68202.0 42-43 78638.0 44-45 94413.0 46-47 93574.0 48-49 83897.0 50-51 75236.0 52-53 72093.0 54-55 76830.0 56-57 81356.0 58-59 86836.0 60-61 86336.0 62-63 84526.0 64-65 93421.0 66-67 98890.0 68-69 102480.0 70-71 94870.0 72-73 83510.0 74-75 85941.0 76-77 89493.0 78-79 91946.0 80-81 93608.0 82-83 89924.0 84-85 91229.0 86-87 95720.0 88-89 100325.0 90-91 104522.0 92-93 111644.0 94-95 137602.0 96-97 331380.0 98-99 724474.0 100-101 5461159.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.84953520229996 #Duplication Level Percentage of deduplicated Percentage of total 1 88.88096755829467 73.63746850535416 2 7.423377231661066 12.30046706548911 3 1.9337941873095583 4.806418487865189 4 0.7497355818693991 2.4846097793002255 5 0.3575529678370914 1.4811548597752968 6 0.19731416859258005 0.9808432294034106 7 0.12786051995511638 0.7415229254304054 8 0.0852873573982132 0.5652814335259523 9 0.05227687287569389 0.3898003157622865 >10 0.18803274134587505 2.3650626689854333 >50 0.0033457637665806816 0.1726960744222028 >100 4.3147869388401427E-4 0.058681249644670114 >500 2.3570400287855372E-5 0.015993405041640183 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 1.0749744129215364E-5 0.0 0.0 1.0749744129215364E-5 0.0 3 1.0749744129215364E-5 0.0 0.0 2.1499488258430728E-5 0.0 4 1.0749744129215364E-5 7.524820890450755E-5 0.0 3.2249232387646096E-5 0.0 5 1.0749744129215364E-5 7.524820890450755E-5 0.0 3.2249232387646096E-5 0.0 6 1.0749744129215364E-5 7.524820890450755E-5 0.0 3.2249232387646096E-5 0.0 7 2.1499488258430728E-5 7.524820890450755E-5 0.0 3.2249232387646096E-5 0.0 8 2.1499488258430728E-5 7.524820890450755E-5 0.0 3.2249232387646096E-5 0.0 9 4.2998976516861456E-5 1.0749744129215365E-4 0.0 4.2998976516861456E-5 0.0 10-11 4.2998976516861456E-5 1.0749744129215365E-4 0.0 5.912359271068451E-5 0.0 12-13 5.3748720646076824E-5 1.0749744129215365E-4 0.0 6.449846477529219E-5 0.0 14-15 5.3748720646076824E-5 1.3974667367979974E-4 0.0 7.524820890450755E-5 0.0 16-17 6.449846477529219E-5 1.6124616193823047E-4 0.0 8.599795303372291E-5 0.0 18-19 6.449846477529219E-5 1.7199590606744583E-4 0.0 9.674769716293827E-5 0.0 20-21 6.449846477529219E-5 1.827456501966612E-4 0.0 1.0212256922754597E-4 0.0 22-23 6.449846477529219E-5 2.0962001051969963E-4 0.0 1.0749744129215365E-4 0.0 24-25 6.449846477529219E-5 2.2036975464891496E-4 0.0 1.236220574859767E-4 0.0 26-27 6.449846477529219E-5 2.3111949877813035E-4 0.0 2.6874360323038415E-4 0.0 28-29 6.449846477529219E-5 2.3649437084273802E-4 0.0 9.728518436939905E-4 0.0 30-31 6.449846477529219E-5 2.687436032303841E-4 0.0 0.0035796647950287162 0.0 32-33 6.449846477529219E-5 2.687436032303841E-4 0.0 0.009389901496869621 0.0 34-35 6.449846477529219E-5 2.902430914888148E-4 0.0 0.017479083954104184 0.0 36-37 6.449846477529219E-5 3.278671959410686E-4 0.0 0.030647520512393004 0.0 38-39 6.449846477529219E-5 3.5474155626410704E-4 0.0 0.05838723523783325 0.0 40-41 6.449846477529219E-5 3.7624104452253776E-4 0.0 0.0855679632685543 0.0 42-43 6.449846477529219E-5 3.9236566071636084E-4 0.0 0.10417039548416149 0.0 44-45 6.449846477529219E-5 4.407395092978299E-4 0.0 0.12834119515870224 0.0 46-47 9.674769716293827E-5 4.837384858146914E-4 0.0 0.1525281194494368 0.0 48-49 9.674769716293827E-5 5.052379740731221E-4 0.0 0.17193678247473515 0.0 50-51 9.674769716293827E-5 5.267374623315528E-4 0.0 0.18976523311303883 0.0 52-53 9.674769716293827E-5 5.267374623315528E-4 0.0 0.2389829366086514 0.0 54-55 9.674769716293827E-5 5.267374623315528E-4 0.0 0.2940108768061048 0.0 56-57 1.0749744129215363E-4 5.374872064607682E-4 0.0 0.3557466573401886 0.0 58-59 1.1824718542136901E-4 5.374872064607682E-4 0.0 0.39692355222714815 0.0 60-61 1.1824718542136901E-4 5.42862078525376E-4 0.0 0.41071547394493146 0.0 62-63 1.1824718542136901E-4 5.643615667838067E-4 0.0 0.4275011994027012 0.0 64-65 1.2899692955058438E-4 6.449846477529219E-4 0.0 0.43577850238219706 0.0 66-67 1.451215457444074E-4 6.557343918821372E-4 0.0 0.442190724755274 0.0 68-69 1.504964178090151E-4 6.664841360113525E-4 0.0 0.44855457327976955 0.0 70-71 1.504964178090151E-4 6.772338801405679E-4 0.0 0.45447230742290257 0.0 72-73 1.504964178090151E-4 6.826087522051757E-4 0.0 0.4589764502130438 0.0 74-75 1.504964178090151E-4 6.987333683989987E-4 0.0 0.46257761449633095 0.0 76-77 1.558712898736228E-4 7.25607728722037E-4 0.0 0.46586166132780626 0.0 78-79 1.6124616193823047E-4 7.309826007866447E-4 0.0 0.4680599840022308 0.0 80-81 1.6124616193823047E-4 7.363574728512525E-4 0.0 0.4687210932661775 0.0 82-83 1.6124616193823047E-4 7.417323449158601E-4 0.0 0.4695541984361917 0.0 84-85 1.6124616193823047E-4 7.417323449158601E-4 0.0 0.4697530687025822 0.0 86-87 1.7199590606744583E-4 7.524820890450755E-4 0.0 0.4698390666556159 0.0 88 1.7199590606744583E-4 7.632318331742909E-4 0.0 0.46984981639974516 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11290 0.0 51.0548 1 GTATCAA 20715 0.0 36.199596 1 TCAACGC 25540 0.0 28.590204 4 ATCAACG 25545 0.0 28.584608 3 CAACGCA 26135 0.0 27.939306 5 TATCAAC 26925 0.0 27.60211 2 AACGCAG 26980 0.0 27.153416 6 CTTATAC 11615 0.0 25.94671 1 ACGCAGA 30925 0.0 23.64659 7 CGCAGAG 31365 0.0 23.301542 8 TATACAC 14790 0.0 22.806076 3 GTGGTAT 5570 0.0 21.162167 1 GCAGAGT 37065 0.0 19.718142 9 TTATACA 15980 0.0 19.670134 2 TGGTATC 5510 0.0 19.34438 2 GAGTACT 22330 0.0 19.069002 12-13 GTACATG 25110 0.0 18.460823 1 AGAGTAC 33760 0.0 18.16418 10-11 CAGAGTA 36035 0.0 18.014696 10-11 TACACAT 18560 0.0 17.903355 5 >>END_MODULE