##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138952_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8574569 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.44981596159527 34.0 31.0 34.0 31.0 34.0 2 32.579464343922126 34.0 31.0 34.0 31.0 34.0 3 32.623710416232 34.0 31.0 34.0 31.0 34.0 4 36.15109330859662 37.0 35.0 37.0 35.0 37.0 5 36.06343105991683 37.0 35.0 37.0 35.0 37.0 6 36.07592090051406 37.0 35.0 37.0 35.0 37.0 7 36.03517564556306 37.0 35.0 37.0 35.0 37.0 8 36.032780423132635 37.0 35.0 37.0 35.0 37.0 9 37.760414196911825 39.0 38.0 39.0 35.0 39.0 10-11 37.69187156812197 39.0 38.0 39.0 35.0 39.0 12-13 37.672694685878675 39.0 37.0 39.0 35.0 39.0 14-15 39.09877015392844 41.0 38.0 41.0 36.0 41.0 16-17 39.07343628583547 41.0 38.0 41.0 35.5 41.0 18-19 39.080559034512405 41.0 38.5 41.0 35.0 41.0 20-21 39.06395644150228 41.0 39.0 41.0 35.0 41.0 22-23 39.04623050210463 41.0 39.0 41.0 35.0 41.0 24-25 39.00498975293269 41.0 39.0 41.0 35.0 41.0 26-27 38.94769962770542 41.0 38.0 41.0 35.0 41.0 28-29 38.88857783743765 40.5 38.0 41.0 35.0 41.0 30-31 38.81147783399122 40.0 38.0 41.0 35.0 41.0 32-33 38.71853270482869 40.0 38.0 41.0 34.0 41.0 34-35 38.64283962537445 40.0 38.0 41.0 34.0 41.0 36-37 38.62527702059434 40.0 38.0 41.0 34.0 41.0 38-39 38.58017438485193 40.0 38.0 41.0 34.0 41.0 40-41 38.5642859284182 40.0 38.0 41.0 34.0 41.0 42-43 38.51577822562267 40.0 38.0 41.0 34.0 41.0 44-45 38.43042626572645 40.0 38.0 41.0 33.5 41.0 46-47 38.383359973568325 40.0 38.0 41.0 33.0 41.0 48-49 38.332747316417226 40.0 38.0 41.0 33.0 41.0 50-51 38.27875951984548 40.0 38.0 41.0 33.0 41.0 52-53 38.15616341738579 40.0 37.0 41.0 33.0 41.0 54-55 38.03321208239234 40.0 37.0 41.0 33.0 41.0 56-57 37.915766446498914 40.0 37.0 41.0 33.0 41.0 58-59 37.80108830640253 40.0 36.5 41.0 33.0 41.0 60-61 37.665877251630434 39.5 36.0 41.0 32.5 41.0 62-63 37.45136153043775 39.0 36.0 41.0 32.0 41.0 64-65 37.236571828220576 39.0 35.0 41.0 32.0 41.0 66-67 37.00497688338392 38.5 35.0 41.0 32.0 41.0 68-69 36.67508328382182 37.5 35.0 40.0 31.0 41.0 70-71 36.34559938574188 37.0 35.0 40.0 31.0 41.0 72-73 36.036976446732986 37.0 35.0 39.0 31.0 41.0 74-75 35.76627518580872 36.0 35.0 39.0 31.0 41.0 76-77 35.47445218022909 36.0 35.0 39.0 31.0 40.5 78-79 35.198247560245974 35.0 34.0 37.0 31.0 39.5 80-81 34.92096060019023 35.0 34.0 37.0 31.0 39.0 82-83 34.626368877804445 35.0 34.0 36.5 31.0 39.0 84-85 34.39415754959299 35.0 34.0 36.0 31.0 37.5 86-87 34.23018675610726 35.0 34.0 36.0 31.0 37.0 88-89 34.08906997282251 35.0 34.0 35.5 31.0 37.0 90-91 33.955010101496235 35.0 34.0 35.0 31.0 36.0 92-93 33.89879653317125 35.0 34.0 35.0 31.0 36.0 94-95 33.84725251451526 35.0 34.0 35.0 31.0 36.0 96-97 33.84306445995883 35.0 34.0 35.0 31.0 36.0 98-99 33.97914567523085 35.0 34.0 35.0 31.0 36.0 100 31.2227492593634 33.0 29.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 19.0 19 43.0 20 85.0 21 274.0 22 1039.0 23 3485.0 24 9313.0 25 19819.0 26 35860.0 27 57313.0 28 83498.0 29 114210.0 30 147206.0 31 185939.0 32 231766.0 33 290672.0 34 378469.0 35 522995.0 36 768159.0 37 1437474.0 38 2367478.0 39 1742605.0 40 176847.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.524882358518546 20.603519547163245 14.657354789494375 24.214243304823835 2 14.82477731524268 21.31082514073938 40.97983859116464 22.884558952853297 3 17.959025731023615 26.08922308710706 30.813166682061055 25.13858449980827 4 12.670666012484125 18.362194064797894 38.66352932724666 30.30361059547133 5 13.047943931261699 37.84650332607502 35.84100249847818 13.2645502441851 6 29.742316590472623 38.27908189241157 18.64677281928453 13.331828697831282 7 26.024841598452355 32.90666854508956 23.458240291727783 17.61024956473031 8 24.16038637044031 36.94852767526858 21.217486266656667 17.673599687634443 9 25.258808926722732 16.93932371411321 21.542540505534447 36.25932685362961 10-11 23.96439936020078 26.93136036638593 29.130999648378662 19.97324062503462 12-13 24.737499803197014 24.51205979545318 29.22050273104233 21.529937670307472 14-15 21.93073878070235 25.89197647578143 26.872060894033428 25.30522384948279 16-17 21.521263950080165 28.887699321742634 27.631382297433188 21.959654430744013 18-19 21.557339982512083 28.02627094256599 29.352524362229016 21.063864712692908 20-21 22.30707690122212 27.26894419634175 29.262402262729236 21.16157663970689 22-23 22.0978453242162 27.108782446480127 29.0695149551769 21.72385727412677 24-25 21.900685202225695 27.234511775839444 29.130466818555266 21.73433620337959 26-27 21.842485687457305 27.361219347858874 29.08215056313978 21.71414440154404 28-29 21.836267912066603 27.38376066079712 29.1182713300633 21.661700097072973 30-31 22.05711057793904 27.255349148778464 28.984650341198087 21.702889932084414 32-33 21.857710831144335 27.381308465907022 28.94716612068044 21.8138145822682 34-35 21.95677337956065 27.450507187522156 28.926629823267586 21.666089609649607 36-37 21.99973838566221 27.275534927730664 28.880473279606438 21.844253407000682 38-39 21.88042730413071 27.469017535436898 28.88402446174261 21.766530698689788 40-41 22.09028109158325 27.369124529289845 28.77372272831708 21.766871650809826 42-43 22.03644948611428 27.45149384822111 28.578034207536668 21.93402245812794 44-45 22.088719624055493 27.60656529823322 28.341270896677944 21.96344418103334 46-47 22.17748774134935 27.5625586246155 28.05866669194742 22.201286942087727 48-49 22.123791945419793 27.637479344192812 28.071072517537925 22.16765619284947 50-51 22.05417106153574 27.769156613773017 27.999891554703275 22.176780769987964 52-53 22.185507082006673 27.748336046779798 27.888472413603672 22.177684457609857 54-55 22.260858429027586 27.652195741307846 27.884093848124486 22.202851981540086 56-57 22.203890748886867 27.711304169407043 27.899570161963528 22.18523491974256 58-59 22.157358450889703 27.783850352330774 27.970913842659247 22.087877354120277 60-61 22.25842366725849 27.782235630813574 27.876724161147447 22.082616540780485 62-63 22.186460150259492 27.894632714496627 27.825553607482156 22.093353527761725 64-65 22.148453177987783 27.817732353917314 27.82529501575744 22.208519452337462 66-67 22.18507597496786 27.864091158468256 27.69380960606461 22.25702326049927 68-69 22.156867501741687 27.789889376078627 27.80886597240706 22.24437714977263 70-71 22.153270973297023 27.567668485857926 27.838965449456555 22.440095091388493 72-73 22.217259159346497 27.629601382286307 27.745399202322012 22.40774025604518 74-75 22.04584067570717 27.771411095631706 27.789234514150678 22.393513714510448 76-77 22.21607306285081 27.719230048560455 27.718916332107078 22.345780556481653 78-79 22.180588912446055 27.725411606519934 27.706891530772243 22.38710795026177 80-81 22.185447160707003 27.773873240048164 27.668271933980904 22.37240766526393 82-83 22.244056691834153 27.740952110878737 27.76838674039677 22.24660445689034 84-85 22.33221540198753 27.72194264805965 27.67621316871518 22.269628781237643 86-87 22.146548010699764 27.81183213944938 27.74931727184059 22.292302578010272 88-89 22.191723523149225 27.67285244351827 27.76449414973694 22.370929883595565 90-91 22.17527694003354 27.786004535864993 27.770095901012386 22.26862262308908 92-93 22.26078498400656 27.717887272463976 27.803931782139625 22.217395961389844 94-95 22.088957101213907 27.860718978897953 27.77938115411501 22.27094276577313 96-97 22.17512174406436 27.905980740551794 27.87221917766819 22.046678337715658 98-99 23.184326778569517 29.78310485199605 28.11419535501583 18.918373014418606 100 22.244305000817917 30.82781118331675 21.521064894455765 25.406818921409563 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2074.0 1 1684.0 2 1921.5 3 2609.5 4 3253.5 5 5364.5 6 7385.5 7 9116.5 8 10333.5 9 10166.0 10 8716.5 11 6913.0 12 7126.0 13 9790.0 14 16915.5 15 27245.0 16 35981.5 17 41225.0 18 43008.0 19 42042.5 20 39515.5 21 36817.0 22 36544.5 23 40483.5 24 48577.5 25 60874.0 26 77371.0 27 96244.5 28 114155.5 29 132483.0 30 150594.0 31 168576.0 32 189141.5 33 209426.5 34 228876.5 35 247464.0 36 268616.0 37 286732.5 38 297326.0 39 308042.0 40 321367.5 41 333030.0 42 339043.0 43 345216.5 44 351795.5 45 356732.0 46 356699.5 47 353983.5 48 354942.0 49 354061.5 50 348698.5 51 339130.5 52 324765.0 53 306483.0 54 288539.0 55 269171.0 56 247571.5 57 225709.0 58 203592.0 59 179101.0 60 149313.5 61 120733.0 62 96215.5 63 74788.0 64 57540.5 65 43965.0 66 33561.5 67 26190.5 68 20385.5 69 15658.0 70 11994.5 71 9112.0 72 6901.5 73 5210.0 74 3963.0 75 3032.5 76 2285.5 77 1716.0 78 1289.5 79 970.5 80 731.5 81 529.5 82 404.5 83 300.0 84 226.0 85 172.0 86 132.0 87 106.5 88 75.0 89 46.5 90 28.5 91 18.0 92 11.5 93 7.5 94 5.0 95 5.0 96 6.0 97 6.0 98 3.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006589252474380927 3 1.9826069391942617E-4 4 0.0 5 0.011079274071967932 6 0.012408786960604084 7 0.0 8 0.0 9 0.0 10-11 4.664957503986498E-5 12-13 4.664957503986498E-5 14-15 1.7493590639949367E-5 16-17 2.5074146583927424E-4 18-19 8.921731226374178E-4 20-21 0.0 22-23 1.4580864306977352E-4 24-25 0.0 26-27 5.836612780139174E-6 28-29 0.0 30-31 0.0 32-33 0.0 34-35 5.294997862585863E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.621887938062819E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.006105950860964174 52-53 1.1392158473531777E-4 54-55 4.468907670643803E-5 56-57 0.0 58-59 6.506329454888657E-6 60-61 8.53910215807415E-5 62-63 9.613565815432929E-4 64-65 0.001392045810086001 66-67 9.667696265051183E-4 68-69 0.009647954213487771 70-71 8.979145726838362E-4 72-73 5.235270983908453E-4 74-75 4.372960490019846E-4 76-77 9.981877188972194E-5 78-79 0.0 80-81 1.3865123580576218E-4 82-83 0.0 84-85 7.472136589461313E-6 86-87 2.0422238092738441E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 298.0 20-21 969.0 22-23 2019.0 24-25 3561.0 26-27 5214.0 28-29 8955.0 30-31 20645.0 32-33 26242.0 34-35 35779.0 36-37 51573.0 38-39 58775.0 40-41 60811.0 42-43 71195.0 44-45 84892.0 46-47 83719.0 48-49 74925.0 50-51 68353.0 52-53 67176.0 54-55 71821.0 56-57 74517.0 58-59 73014.0 60-61 71252.0 62-63 69706.0 64-65 73918.0 66-67 78071.0 68-69 78579.0 70-71 77345.0 72-73 73619.0 74-75 75400.0 76-77 78845.0 78-79 81001.0 80-81 82036.0 82-83 79196.0 84-85 79884.0 86-87 84784.0 88-89 89747.0 90-91 93394.0 92-93 99536.0 94-95 124974.0 96-97 307275.0 98-99 678217.0 100-101 5153337.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.65184556470406 #Duplication Level Percentage of deduplicated Percentage of total 1 90.15848550114431 77.22240676491624 2 6.916500876962603 11.848221299234822 3 1.637777031030516 4.208358759937359 4 0.5719289419410212 1.9594707763646777 5 0.27578666539631247 1.1810818436664836 6 0.1469476859531018 0.7551804302007425 7 0.08509842351433086 0.5102185920054474 8 0.05520197236584804 0.37825206495573427 9 0.03315217440647803 0.2555590430158012 >10 0.11722353697251403 1.5031386098990231 >50 0.0014410735800797986 0.07837105181018064 >100 3.912380523347052E-4 0.062286892422047886 >500 6.487868069531305E-5 0.037453871571508784 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1662393759966244E-5 0.0 2.3324787519932488E-5 0.0 3 0.0 1.1662393759966244E-5 0.0 2.3324787519932488E-5 0.0 4 0.0 3.4987181279898735E-5 0.0 2.3324787519932488E-5 0.0 5 0.0 3.4987181279898735E-5 0.0 2.3324787519932488E-5 0.0 6 2.3324787519932488E-5 3.4987181279898735E-5 0.0 3.4987181279898735E-5 1.1662393759966244E-5 7 2.3324787519932488E-5 3.4987181279898735E-5 0.0 4.6649575039864975E-5 1.1662393759966244E-5 8 2.3324787519932488E-5 3.4987181279898735E-5 0.0 4.6649575039864975E-5 1.1662393759966244E-5 9 2.3324787519932488E-5 3.4987181279898735E-5 0.0 5.831196879983122E-5 2.3324787519932488E-5 10-11 2.3324787519932488E-5 3.4987181279898735E-5 0.0 5.831196879983122E-5 2.3324787519932488E-5 12-13 2.3324787519932488E-5 3.4987181279898735E-5 0.0 5.831196879983122E-5 2.915598439991561E-5 14-15 2.3324787519932488E-5 7.580555943978059E-5 0.0 5.831196879983122E-5 5.2480771919848095E-5 16-17 6.997436255979747E-5 8.163675631976371E-5 0.0 5.831196879983122E-5 5.831196879983122E-5 18-19 6.997436255979747E-5 8.746795319974683E-5 0.0 1.0496154383969619E-4 5.831196879983122E-5 20-21 6.997436255979747E-5 1.049615438396962E-4 0.0 1.282863313596287E-4 5.831196879983122E-5 22-23 8.163675631976371E-5 1.1662393759966244E-4 0.0 1.3994872511959494E-4 5.831196879983122E-5 24-25 8.163675631976371E-5 1.1662393759966244E-4 0.0 1.3994872511959494E-4 6.997436255979747E-5 26-27 8.163675631976371E-5 1.1662393759966244E-4 0.0 1.6327351263952742E-4 8.163675631976371E-5 28-29 9.329915007972995E-5 1.1662393759966244E-4 0.0 3.0905343463910547E-4 8.746795319974683E-5 30-31 9.329915007972995E-5 1.3994872511959494E-4 0.0 0.0010729402259168944 9.913034695971308E-5 32-33 9.329915007972995E-5 1.3994872511959494E-4 0.0 0.002513245855272726 1.049615438396962E-4 34-35 9.329915007972995E-5 1.6910470951951053E-4 0.0 0.004379228856867325 1.049615438396962E-4 36-37 9.329915007972995E-5 1.92429497039443E-4 0.0 0.007580555943978059 1.1079274071967932E-4 38-39 9.329915007972995E-5 2.0409189079940927E-4 0.0 0.012525410898203746 1.3994872511959494E-4 40-41 1.049615438396962E-4 2.2158548143935865E-4 0.0 0.0178959432246682 1.3994872511959494E-4 42-43 1.049615438396962E-4 2.2741667831934176E-4 0.0 0.02287578536017379 1.3994872511959494E-4 44-45 1.049615438396962E-4 2.565726627192574E-4 0.0 0.02863117668071713 1.4577992199957805E-4 46-47 1.049615438396962E-4 2.798974502391899E-4 0.0 0.034783089389099325 1.5161111887956118E-4 48-49 1.049615438396962E-4 2.85728647119173E-4 0.0 0.04084753414428177 1.6327351263952742E-4 50-51 1.049615438396962E-4 3.2071582839907173E-4 0.0 0.04659709426794513 1.6327351263952742E-4 52-53 1.049615438396962E-4 3.382094190390211E-4 0.0 0.052043432153849364 1.6327351263952742E-4 54-55 1.049615438396962E-4 3.382094190390211E-4 0.0 0.05767053714303308 1.6327351263952742E-4 56-57 1.049615438396962E-4 3.382094190390211E-4 0.0 0.06415482807357431 1.6327351263952742E-4 58-59 1.049615438396962E-4 3.382094190390211E-4 0.0 0.07060996301971563 1.6910470951951053E-4 60-61 1.1662393759966246E-4 3.440406159190042E-4 0.0 0.07665108298737813 1.7493590639949366E-4 62-63 1.7493590639949366E-4 3.498718127989873E-4 0.0 0.08258141021432097 1.865983001594599E-4 64-65 1.7493590639949366E-4 3.965213878388523E-4 0.0 0.08778283783126592 1.865983001594599E-4 66-67 1.7493590639949366E-4 4.198461753587848E-4 0.0 0.09384728258644837 1.865983001594599E-4 68-69 1.7493590639949366E-4 4.198461753587848E-4 0.0 0.0996376610882716 1.865983001594599E-4 70-71 1.9826069391942614E-4 4.3150856911875103E-4 0.0 0.10468164638945701 1.865983001594599E-4 72-73 1.9826069391942614E-4 4.3150856911875103E-4 0.0 0.10864686026784554 1.9826069391942614E-4 74-75 1.9826069391942614E-4 4.6066455351866667E-4 0.0 0.11176071940175653 1.9826069391942614E-4 76-77 1.9826069391942614E-4 5.014829316785485E-4 0.0 0.11484542255126759 1.9826069391942614E-4 78-79 1.9826069391942614E-4 5.24807719198481E-4 0.0 0.11690383504990162 1.9826069391942614E-4 80-81 1.9826069391942614E-4 5.24807719198481E-4 0.0 0.11741114917846016 2.0992308767939238E-4 82-83 1.9826069391942614E-4 5.306389160784641E-4 0.0 0.11808173681965822 2.2158548143935865E-4 84-85 1.9826069391942614E-4 5.364701129584472E-4 0.0 0.11827416631669767 2.2158548143935865E-4 86-87 1.9826069391942614E-4 5.364701129584472E-4 0.0 0.11836163426989742 2.2741667831934176E-4 88 1.9826069391942614E-4 5.71457294238346E-4 0.0 0.11836163426989742 2.4491026895929113E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10430 0.0 51.78785 1 GTATCAA 19000 0.0 35.226032 1 TCAACGC 22510 0.0 29.20738 4 ATCAACG 22545 0.0 29.124723 3 CAACGCA 22945 0.0 28.580328 5 TATCAAC 23720 0.0 27.773092 2 AACGCAG 24050 0.0 27.29961 6 ACGCAGA 27370 0.0 23.924725 7 CGCAGAG 28440 0.0 22.980244 8 GTGGTAT 5050 0.0 20.742212 1 GCAGAGT 33315 0.0 19.630156 9 GTACATG 22675 0.0 19.628428 1 TGGTATC 4855 0.0 19.409124 2 TACATGG 22520 0.0 19.240482 2 GAGTACT 20680 0.0 19.106537 12-13 ACATGGG 22645 0.0 18.593918 3 CAGAGTA 32360 0.0 18.292553 10-11 AGAGTAC 30265 0.0 17.724508 10-11 GTACTTT 23225 0.0 17.005074 14-15 AGTACTT 22360 0.0 16.31674 12-13 >>END_MODULE