##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138950_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9753691 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43031330395847 34.0 31.0 34.0 31.0 34.0 2 32.56211387053373 34.0 31.0 34.0 31.0 34.0 3 32.61289659473527 34.0 31.0 34.0 31.0 34.0 4 36.13648474203253 37.0 35.0 37.0 35.0 37.0 5 36.04591328554493 37.0 35.0 37.0 35.0 37.0 6 36.058307055247084 37.0 35.0 37.0 35.0 37.0 7 36.016993669370905 37.0 35.0 37.0 35.0 37.0 8 36.01240258687711 37.0 35.0 37.0 35.0 37.0 9 37.735753060046704 39.0 38.0 39.0 35.0 39.0 10-11 37.66994981694622 39.0 37.0 39.0 35.0 39.0 12-13 37.65188491208097 39.0 37.0 39.0 35.0 39.0 14-15 39.072677615069004 41.0 38.0 41.0 35.0 41.0 16-17 39.04831817001379 41.0 38.0 41.0 35.0 41.0 18-19 39.05408101404893 41.0 38.5 41.0 35.0 41.0 20-21 39.04410622846467 41.0 39.0 41.0 35.0 41.0 22-23 39.0273706538114 41.0 39.0 41.0 35.0 41.0 24-25 38.99002882713698 41.0 39.0 41.0 35.0 41.0 26-27 38.93041009392863 41.0 38.0 41.0 35.0 41.0 28-29 38.87266581174781 40.0 38.0 41.0 35.0 41.0 30-31 38.79695751678916 40.0 38.0 41.0 34.5 41.0 32-33 38.70766954134217 40.0 38.0 41.0 34.0 41.0 34-35 38.63123235521127 40.0 38.0 41.0 34.0 41.0 36-37 38.6099341401329 40.0 38.0 41.0 34.0 41.0 38-39 38.55969459244395 40.0 38.0 41.0 34.0 41.0 40-41 38.55135390093522 40.0 38.0 41.0 34.0 41.0 42-43 38.50755244091704 40.0 38.0 41.0 34.0 41.0 44-45 38.42969143491291 40.0 38.0 41.0 33.5 41.0 46-47 38.38916555873288 40.0 38.0 41.0 33.0 41.0 48-49 38.348626276710604 40.0 38.0 41.0 33.0 41.0 50-51 38.290303605712495 40.0 38.0 41.0 33.0 41.0 52-53 38.174711692273775 40.0 37.5 41.0 33.0 41.0 54-55 38.06244909697954 40.0 37.0 41.0 33.0 41.0 56-57 37.94784685651746 40.0 37.0 41.0 33.0 41.0 58-59 37.84859351759907 40.0 37.0 41.0 33.0 41.0 60-61 37.72332347208309 40.0 36.0 41.0 32.5 41.0 62-63 37.53634152694691 39.0 36.0 41.0 32.0 41.0 64-65 37.34773042684337 39.0 35.5 41.0 32.0 41.0 66-67 37.134139459179124 39.0 35.0 41.0 32.0 41.0 68-69 36.822802133203396 38.0 35.0 40.5 31.0 41.0 70-71 36.51322698374469 37.5 35.0 40.0 31.0 41.0 72-73 36.21628326028494 37.0 35.0 39.5 31.0 41.0 74-75 35.9498011274775 36.5 35.0 39.0 31.0 41.0 76-77 35.65067787673519 36.0 35.0 39.0 31.0 41.0 78-79 35.36458714082819 36.0 34.5 38.0 31.0 39.5 80-81 35.0721663529003 35.0 34.0 37.0 31.0 39.0 82-83 34.75807637490361 35.0 34.0 37.0 31.0 39.0 84-85 34.50781918804839 35.0 34.0 36.0 31.0 38.0 86-87 34.32390757518502 35.0 34.0 36.0 31.0 37.0 88-89 34.16372281692278 35.0 34.0 36.0 31.0 37.0 90-91 34.016552351757454 35.0 34.0 35.5 31.0 36.5 92-93 33.95107658903514 35.0 34.0 35.0 31.0 36.0 94-95 33.885691565198414 35.0 34.0 35.0 31.0 36.0 96-97 33.87379467063411 35.0 34.0 35.0 31.0 36.0 98-99 34.01039039350283 35.0 34.0 35.0 31.0 36.0 100 31.255959451509376 33.0 29.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 24.0 19 72.0 20 97.0 21 328.0 22 1270.0 23 4286.0 24 11033.0 25 23336.0 26 41788.0 27 66232.0 28 97247.0 29 129684.0 30 167068.0 31 210319.0 32 260841.0 33 326549.0 34 425049.0 35 581800.0 36 849244.0 37 1557358.0 38 2654944.0 39 2141935.0 40 203185.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.676036487110366 21.255573915556685 14.855360909013829 24.21302868831912 2 14.319391576502797 21.4020296163005 42.005234246635034 22.273344560561668 3 17.86405087393699 26.427169320127238 30.885497757871438 24.82328204806433 4 12.39828081492432 18.74368380134249 39.127290376535406 29.73074500719779 5 12.721474182690079 38.01725159762459 36.27092825669944 12.990345962985886 6 29.064223118517994 38.82441244462309 19.066012406068815 13.0453520307901 7 25.54840008772064 33.00958580705499 23.827369556817004 17.61464454840737 8 23.378729139563678 37.9561337343986 21.50257784463338 17.16255928140434 9 24.710758214505667 17.442217515400067 22.05419466333309 35.792829606761174 10-11 23.565768148417295 27.340340392270086 29.441996709347272 19.651894749965347 12-13 24.33283434254144 24.75379310408464 29.59942737551451 21.31394517785941 14-15 21.41017289814558 26.261064978430472 27.226791746160085 25.101970377263864 16-17 21.068018773451115 29.39116491309551 27.94114111435519 21.599675199098186 18-19 21.071040418421507 28.51503333201929 29.592767682569203 20.821158566989993 20-21 21.788161006149505 27.664415460739168 29.56904251275717 20.978381020354156 22-23 21.532244406868145 27.720053740293565 29.36520034502651 21.38250150781178 24-25 21.395401125050185 27.82528796562281 29.45456134387308 21.32474956545393 26-27 21.375900902888535 28.028646849351446 29.296391175487273 21.299061072272746 28-29 21.26624054285012 27.98826014115003 29.357600555312718 21.387898760687133 30-31 21.664436652293062 27.8064151082921 29.32177068437966 21.207377555035176 32-33 21.45488302529026 27.889179275266084 29.303205925773117 21.352731773670534 34-35 21.497210639893698 28.01106769064233 29.321864822438027 21.169856847025947 36-37 21.52004589314031 27.91176223957526 29.197918745254576 21.37027312202985 38-39 21.331082398879644 27.914358460892657 29.31151150657178 21.44304763365591 40-41 21.5859743194486 27.822476783327193 29.220342032521263 21.371206864702945 42-43 21.514822747673694 27.85523402582189 29.07310368552471 21.556839540979706 44-45 21.554358558847287 28.00923950001754 28.885631829700454 21.550770111434723 46-47 21.62618855253956 27.982930235386615 28.576788421358977 21.81409279071485 48-49 21.637862650838528 28.034078049286858 28.5443248478927 21.78373445198191 50-51 21.544948891291646 28.197780650033128 28.487609101126317 21.76966135754891 52-53 21.583813668559674 28.195733167817778 28.457549397631677 21.762903765990878 54-55 21.645419811655387 28.146951814812855 28.41877680724011 21.78885156629165 56-57 21.65778385863639 28.196839937068564 28.34908663338396 21.796289570911085 58-59 21.52661192200169 28.331596201859643 28.486791917398886 21.654999958739786 60-61 21.703203298699215 28.407379700008928 28.25275389774905 21.636663103542805 62-63 21.55693486304368 28.47173508118418 28.25343681431196 21.71789324146018 64-65 21.525294452471133 28.452641415040464 28.23685602839361 21.785208104094796 66-67 21.58896612845947 28.53523874214112 28.083060509135628 21.792734620263776 68-69 21.58689466710402 28.400146880545734 28.119793371313044 21.8931650810372 70-71 21.577536582579196 28.133099901318154 28.251705898584618 22.037657617518033 72-73 21.69568268363457 28.10931432539725 28.169620526342616 22.02538246462557 74-75 21.631755166686172 28.220185873698522 28.152531483229282 21.99552747638602 76-77 21.697155625658855 28.225334017448716 28.04941234131989 22.02809801557254 78-79 21.67477453155006 28.20275506249604 28.08219944940481 22.040270956549087 80-81 21.708816179399008 28.230382095111484 28.060855531187094 21.999946194302414 82-83 21.708094672913177 28.24672487291451 28.1779838994001 21.867196554772217 84-85 21.87516261043513 28.200374259237428 28.087602481624607 21.83686064870284 86-87 21.70435109229163 28.293656209912786 28.13704615807865 21.864946539716932 88-89 21.732983590095888 28.277084912160415 28.137347327561713 21.85258417018198 90-91 21.748670964977716 28.3634493720454 28.098593119592426 21.789286543384456 92-93 21.831627878897642 28.28921287492328 28.192787303411293 21.68637194276779 94-95 21.669382887393297 28.40552330266297 28.2541592666197 21.670934543324034 96-97 21.705826603576458 28.455869485743197 28.373916900425012 21.464387010255333 98-99 22.699095226777832 30.304840454527255 28.636194028529776 18.35987029016514 100 21.729323359496544 31.38680797820645 22.112011832888385 24.771856829408627 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1913.0 1 1621.0 2 2055.0 3 2866.5 4 3776.5 5 6388.0 6 8589.0 7 10046.0 8 10869.0 9 10176.0 10 8569.0 11 6902.5 12 7238.5 13 10354.5 14 18548.0 15 30262.5 16 39895.5 17 45689.0 18 47865.5 19 47393.5 20 45585.5 21 43853.0 22 44658.0 23 50147.5 24 60998.5 25 77018.5 26 97758.0 27 120537.0 28 144643.5 29 172117.5 30 196998.5 31 219824.0 32 243767.5 33 266005.0 34 287354.5 35 307013.0 36 326891.5 37 346866.0 38 362435.5 39 373884.0 40 385356.5 41 396158.5 42 404263.0 43 408797.5 44 412063.5 45 418430.5 46 424905.0 47 424364.0 48 415216.0 49 400370.5 50 385015.5 51 367555.5 52 346418.5 53 324034.5 54 299524.5 55 272551.5 56 246550.0 57 220867.0 58 194038.0 59 167719.5 60 139646.0 61 112902.5 62 90111.0 63 70174.5 64 53313.0 65 40905.0 66 31611.0 67 24950.5 68 19725.0 69 14834.5 70 11140.5 71 8325.5 72 6265.0 73 4746.5 74 3563.0 75 2707.0 76 2040.0 77 1496.0 78 1078.5 79 772.5 80 552.5 81 386.5 82 290.5 83 211.5 84 156.5 85 113.5 86 84.5 87 73.5 88 53.5 89 35.0 90 23.5 91 18.0 92 15.5 93 8.5 94 3.5 95 3.0 96 1.5 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0063155578744497854 3 1.332828772205312E-4 4 0.0 5 0.0111444990414398 6 0.012364549994458508 7 0.0 8 0.0 9 0.0 10-11 3.075758705089181E-5 12-13 4.101011606785575E-5 14-15 5.1262645084819685E-6 16-17 2.4093443189865252E-4 18-19 8.355811148825609E-4 20-21 0.0 22-23 1.1792784169694677E-4 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 3.105527855109734E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.0643898374612855E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0063422436409729535 52-53 1.4520193875862508E-4 54-55 6.756348941099951E-5 56-57 0.0 58-59 5.7305851357217456E-6 60-61 1.0995497633074456E-4 62-63 0.0011335791564009096 64-65 0.0015281516209617561 66-67 0.0012103731723588688 68-69 0.00999440180883 70-71 0.0010730148828383584 72-73 5.977586883917234E-4 74-75 4.544720768309326E-4 76-77 1.1325011924293805E-4 78-79 0.0 80-81 1.6733801390630385E-4 82-83 0.0 84-85 6.586751368776335E-6 86-87 1.999358339263652E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 328.0 20-21 1155.0 22-23 2204.0 24-25 3817.0 26-27 6013.0 28-29 10707.0 30-31 26953.0 32-33 32527.0 34-35 43491.0 36-37 64540.0 38-39 72303.0 40-41 75120.0 42-43 83321.0 44-45 97457.0 46-47 97935.0 48-49 88360.0 50-51 76856.0 52-53 71634.0 54-55 74138.0 56-57 78945.0 58-59 84053.0 60-61 84374.0 62-63 81885.0 64-65 87159.0 66-67 90506.0 68-69 93683.0 70-71 89840.0 72-73 82512.0 74-75 83670.0 76-77 85987.0 78-79 90393.0 80-81 91721.0 82-83 87248.0 84-85 87866.0 86-87 91838.0 88-89 97370.0 90-91 103419.0 92-93 110602.0 94-95 139666.0 96-97 341619.0 98-99 769382.0 100-101 5871094.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.41085825929224 #Duplication Level Percentage of deduplicated Percentage of total 1 88.43080047218932 73.76088963941537 2 7.850833096425319 13.096894532465855 3 2.0807841028785896 5.206799636201839 4 0.7722352342766663 2.576512146763294 5 0.3531112029151672 1.4726654248062596 6 0.18002514499383832 0.9009631111313748 7 0.10552163453612536 0.6161155071107113 8 0.061700152138560095 0.4117170115684963 9 0.04426931239053355 0.33232872069388114 >10 0.11871372118555502 1.4511208582184896 >50 0.001611952664998428 0.09307189508374601 >100 3.538542126345323E-4 0.05299601592650105 >500 4.0119192729158235E-5 0.02792550061412871 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0252529016963937E-5 2 2.0505058033927874E-5 5.1262645084819686E-5 0.0 0.0 1.0252529016963937E-5 3 2.0505058033927874E-5 5.1262645084819686E-5 0.0 0.0 1.0252529016963937E-5 4 2.0505058033927874E-5 6.151517410178362E-5 0.0 0.0 1.0252529016963937E-5 5 2.0505058033927874E-5 6.151517410178362E-5 0.0 0.0 1.0252529016963937E-5 6 2.0505058033927874E-5 6.151517410178362E-5 0.0 0.0 1.0252529016963937E-5 7 2.0505058033927874E-5 6.151517410178362E-5 0.0 0.0 1.0252529016963937E-5 8 2.0505058033927874E-5 6.151517410178362E-5 0.0 0.0 1.0252529016963937E-5 9 6.151517410178362E-5 8.20202321357115E-5 0.0 1.0252529016963937E-5 3.075758705089181E-5 10-11 8.20202321357115E-5 8.714649664419346E-5 0.0 5.126264508481968E-5 3.075758705089181E-5 12-13 9.227276115267543E-5 1.1277781918660331E-4 0.0 8.20202321357115E-5 3.075758705089181E-5 14-15 9.227276115267543E-5 1.8967178681383282E-4 0.0 1.2303034820356724E-4 5.1262645084819686E-5 16-17 9.227276115267543E-5 1.947980513223148E-4 0.0 1.5378793525445907E-4 5.1262645084819686E-5 18-19 1.0765155467812134E-4 2.2555563837320662E-4 0.0 1.7429299328838692E-4 5.1262645084819686E-5 20-21 1.5891419976294101E-4 2.6143948993258043E-4 0.0 1.8454552230535087E-4 5.1262645084819686E-5 22-23 1.947980513223148E-4 3.0757587050891813E-4 0.0 2.1530310935624267E-4 8.714649664419346E-5 24-25 2.0505058033927875E-4 3.127021350174001E-4 0.0 3.2295466403436403E-4 1.2303034820356724E-4 26-27 2.0505058033927875E-4 3.2295466403436403E-4 0.0 4.97247657322751E-4 1.4353540623749511E-4 28-29 2.1530310935624267E-4 3.28080928542846E-4 0.0 0.0018095713714941348 1.4353540623749511E-4 30-31 2.4093443189865252E-4 3.895961026446296E-4 0.0 0.0068896994993997655 1.486616707459771E-4 32-33 2.8707081247499023E-4 3.895961026446296E-4 0.0 0.017255006335550306 1.5378793525445907E-4 34-35 4.408587477294493E-4 4.2035368969552144E-4 0.0 0.031121551830994028 1.794192577968689E-4 36-37 4.6136380576337714E-4 4.8186886379730505E-4 0.0 0.05250320109587232 1.8454552230535087E-4 38-39 5.075001863397148E-4 5.433840378990887E-4 0.0 0.10089001179143363 1.8454552230535087E-4 40-41 5.382577733906066E-4 6.151517410178363E-4 0.0 0.14921530731289315 1.8454552230535087E-4 42-43 5.536365669160526E-4 6.151517410178363E-4 0.0 0.1822643345990764 1.8967178681383282E-4 44-45 5.536365669160526E-4 6.407830635602461E-4 0.0 0.22517116853507047 1.9992431583079677E-4 46-47 5.946466829839084E-4 6.664143861026559E-4 0.0 0.26597623402258697 2.1530310935624267E-4 48-49 6.151517410178363E-4 6.664143861026559E-4 0.0 0.2989791249281939 2.460606964071345E-4 50-51 6.356567990517641E-4 7.176770311874756E-4 0.0 0.3302903485460017 2.460606964071345E-4 52-53 6.459093280687281E-4 7.228032956959576E-4 0.0 0.410383105226524 2.7681828345802633E-4 54-55 6.56161857085692E-4 7.433083537298855E-4 0.0 0.49150624107325114 3.127021350174001E-4 56-57 6.664143861026559E-4 7.894447343062232E-4 0.0 0.5875519329041694 3.1782839952588203E-4 58-59 6.664143861026559E-4 7.996972633231871E-4 0.0 0.6487646573999525 3.1782839952588203E-4 60-61 7.176770311874756E-4 8.458336438995249E-4 0.0 0.6719866356233758 3.1782839952588203E-4 62-63 7.279295602044395E-4 8.509599084080068E-4 0.0 0.6896517431196048 3.28080928542846E-4 64-65 7.484346182383674E-4 0.0010303791662048757 0.0 0.6981305846166338 3.28080928542846E-4 66-67 7.638134117638133E-4 0.0010713892822727315 0.0 0.7058046025858313 3.28080928542846E-4 68-69 7.689396762722953E-4 0.0011329044563745151 0.0 0.7133248326197744 3.28080928542846E-4 70-71 7.689396762722953E-4 0.0011892933659678167 0.0 0.7190508700757487 3.28080928542846E-4 72-73 7.843184697977412E-4 0.0012354297465441543 0.0 0.7233056696177887 3.588385155937378E-4 74-75 7.996972633231871E-4 0.0012713135981035281 0.0 0.7268889285092177 3.588385155937378E-4 76-77 7.996972633231871E-4 0.001312323714171384 0.0 0.7302261267042395 3.588385155937378E-4 78-79 7.996972633231871E-4 0.001312323714171384 0.0 0.7325483245265818 3.588385155937378E-4 80-81 7.996972633231871E-4 0.001317449978679866 0.0 0.7333326429963796 3.6909104461070174E-4 82-83 7.996972633231871E-4 0.00132770250769683 0.0 0.7340246887050246 3.9984863166159354E-4 84-85 7.996972633231871E-4 0.0013328287722053117 0.0 0.7342758756659402 3.9984863166159354E-4 86-87 8.09949792340151E-4 0.0013430813012222757 0.0 0.734347643369059 3.9984863166159354E-4 88 8.20202321357115E-4 0.0014353540623749511 0.0 0.734347643369059 4.101011606785575E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11240 0.0 48.388123 1 GTATCAA 19520 0.0 33.005085 1 TCAACGC 23115 0.0 27.17966 4 ATCAACG 23090 0.0 27.154526 3 CAACGCA 23675 0.0 26.412596 5 TATCAAC 24615 0.0 25.798073 2 AACGCAG 24525 0.0 25.52841 6 ACGCAGA 28290 0.0 22.023876 7 CGCAGAG 28890 0.0 21.566475 8 GTGGTAT 6245 0.0 19.570229 1 TGGTATC 5815 0.0 18.922865 2 GTACATG 23725 0.0 18.622795 1 TACATGG 23635 0.0 18.320543 2 GCAGAGT 34065 0.0 18.216244 9 ACATGGG 23250 0.0 17.845978 3 GAGTACT 22110 0.0 17.498533 12-13 CAGAGTA 33545 0.0 17.209478 10-11 AGAGTAC 31195 0.0 16.655321 10-11 CATGGGG 17390 0.0 16.131815 4 GTACTTT 25475 0.0 15.229092 14-15 >>END_MODULE