##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138949_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15974298 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42741828154201 34.0 31.0 34.0 31.0 34.0 2 32.559488999140996 34.0 31.0 34.0 31.0 34.0 3 32.60964331578139 34.0 31.0 34.0 31.0 34.0 4 36.13376537735805 37.0 35.0 37.0 35.0 37.0 5 36.041187788033 37.0 35.0 37.0 35.0 37.0 6 36.05619739909697 37.0 35.0 37.0 35.0 37.0 7 36.010107987217964 37.0 35.0 37.0 35.0 37.0 8 36.00479758171533 37.0 35.0 37.0 35.0 37.0 9 37.731010527035366 39.0 38.0 39.0 35.0 39.0 10-11 37.65942418878125 39.0 37.0 39.0 35.0 39.0 12-13 37.63804822596899 39.0 37.0 39.0 35.0 39.0 14-15 39.0566745405651 41.0 38.0 41.0 35.0 41.0 16-17 39.02998466661884 41.0 38.0 41.0 35.0 41.0 18-19 39.03198131147923 41.0 38.5 41.0 35.0 41.0 20-21 39.01924657171766 41.0 39.0 41.0 35.0 41.0 22-23 39.00392967269815 41.0 39.0 41.0 35.0 41.0 24-25 38.95776443315694 41.0 38.0 41.0 35.0 41.0 26-27 38.88956453477286 40.5 38.0 41.0 35.0 41.0 28-29 38.82789497109018 40.0 38.0 41.0 35.0 41.0 30-31 38.75454598271202 40.0 38.0 41.0 34.5 41.0 32-33 38.65901294165398 40.0 38.0 41.0 34.0 41.0 34-35 38.57693831161296 40.0 38.0 41.0 34.0 41.0 36-37 38.54996074053432 40.0 38.0 41.0 34.0 41.0 38-39 38.482038600779084 40.0 38.0 41.0 34.0 41.0 40-41 38.468709487200215 40.0 38.0 41.0 34.0 41.0 42-43 38.41976796305577 40.0 38.0 41.0 33.5 41.0 44-45 38.33331394950643 40.0 38.0 41.0 33.0 41.0 46-47 38.28365714187538 40.0 38.0 41.0 33.0 41.0 48-49 38.23496482695126 40.0 38.0 41.0 33.0 41.0 50-51 38.15616379539475 40.0 37.5 41.0 33.0 41.0 52-53 38.03664195370662 40.0 37.0 41.0 33.0 41.0 54-55 37.909409312701555 40.0 37.0 41.0 33.0 41.0 56-57 37.778353285410134 40.0 36.5 41.0 32.0 41.0 58-59 37.6674573248182 40.0 36.0 41.0 32.0 41.0 60-61 37.507884367793054 39.0 36.0 41.0 32.0 41.0 62-63 37.31285640787685 39.0 35.5 41.0 32.0 41.0 64-65 37.111224039511626 39.0 35.0 41.0 32.0 41.0 66-67 36.87334018795694 38.5 35.0 41.0 31.0 41.0 68-69 36.550219606991476 37.5 35.0 40.0 31.0 41.0 70-71 36.234532207826 37.0 35.0 40.0 31.0 41.0 72-73 35.937294071826656 36.5 35.0 39.0 31.0 41.0 74-75 35.67742575755257 36.0 35.0 39.0 31.0 41.0 76-77 35.392588196721036 36.0 34.5 38.5 31.0 40.5 78-79 35.125231389933646 35.0 34.0 37.0 31.0 39.5 80-81 34.85465325051851 35.0 34.0 37.0 31.0 39.0 82-83 34.567179094023125 35.0 34.0 36.5 30.5 39.0 84-85 34.338212313558756 35.0 34.0 36.0 30.0 37.0 86-87 34.17875829865953 35.0 34.0 36.0 30.0 37.0 88-89 34.04406209588769 35.0 34.0 35.5 31.0 37.0 90-91 33.91515836982606 35.0 34.0 35.0 30.0 36.0 92-93 33.863325254811166 35.0 34.0 35.0 31.0 36.0 94-95 33.81496795971222 35.0 34.0 35.0 31.0 36.0 96-97 33.815466307490894 35.0 34.0 35.0 31.0 36.0 98-99 33.95682136175114 35.0 34.0 35.0 31.0 36.0 100 31.17953103721587 33.0 29.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 31.0 19 91.0 20 230.0 21 621.0 22 2409.0 23 7915.0 24 20373.0 25 41672.0 26 74142.0 27 117698.0 28 168593.0 29 226084.0 30 288680.0 31 358664.0 32 442410.0 33 552540.0 34 720467.0 35 987719.0 36 1450763.0 37 2705913.0 38 4387929.0 39 3128034.0 40 291318.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.03837915130919 20.729292767669666 14.727451559999693 24.50487652102146 2 14.600159228501164 20.85834516925181 41.68841184751702 22.85308375473001 3 18.14006867790832 25.89973080473496 30.6738307671871 25.28636975016962 4 12.650596602116726 18.448453885109693 37.84511845215358 31.055831060620005 5 13.048337129107516 37.7043242901103 35.75568566319282 13.491652917589366 6 29.894023887371024 37.95143026023747 18.403020014621497 13.751525837770004 7 26.22939048714378 32.6194490674958 22.763479183873997 18.38768126148642 8 24.02849251967129 37.37347957324948 21.043910661989653 17.554117245089582 9 24.854156345399343 17.10728070804739 21.18602645324383 36.852536493309444 10-11 24.053794676190552 26.883443897944915 28.7459173862107 20.316844039653834 12-13 24.792228689418135 24.204212092252718 28.891417673920362 22.112141544408786 14-15 21.937588926060062 25.7483670720648 26.28939246244741 26.02465153942773 16-17 21.743151442250134 29.03886456068459 27.0124730366967 22.205510960368578 18-19 21.796942046803245 27.830305702043972 28.744157200486864 21.628595050665922 20-21 22.327097238961095 26.91919496404594 28.822155022578617 21.931552774414353 22-23 22.028122182059622 27.164229083832414 28.696853662097205 22.11079507201076 24-25 21.950436845124933 27.372365761719024 28.81890430042696 21.858293092729078 26-27 21.82692837599129 27.33928773230413 28.90970597193046 21.924077919774117 28-29 21.505586008808674 27.035976622612 28.987448172066433 22.47098919651289 30-31 21.780956388572097 26.933882770161837 29.07119986169675 22.21396097956931 32-33 21.631553300566175 27.1995443153051 29.032151646426957 22.13675073770177 34-35 21.771742803150325 27.515197225936816 29.079274373458176 21.63378559745469 36-37 21.874189475362066 27.249992599686973 28.63976662664734 22.236051298303618 38-39 21.849583355936282 27.146764273519068 28.904296180236187 22.09935619030846 40-41 22.027046885170442 27.059551633567064 28.881638428223095 22.0317630530394 42-43 22.167776644628383 27.033625066676564 28.749373229777923 22.04922505891713 44-45 21.94177433152648 27.37103478757018 28.547255575219292 22.13993530568404 46-47 22.373346920958035 27.089303580765538 28.008016196892232 22.529333301384195 48-49 22.224668493403467 27.20706067417708 28.04439541087378 22.52387542154567 50-51 21.973913328331935 27.4070614647585 28.18240436782814 22.436620839081428 52-53 22.102598041920572 27.473660506018184 28.301223809809812 22.122517642251434 54-55 22.113253847611954 27.459767369178937 28.024587195087562 22.402391588121542 56-57 22.326331310017263 27.738720458733905 27.640571813435656 22.294376417813176 58-59 21.909692247048508 28.030547350085623 28.084549159114935 21.975211243750937 60-61 22.256551191665014 28.269137200519133 27.516838275222856 21.957473332592997 62-63 21.956121875952277 28.558316562601217 27.510073968595538 21.975487592850968 64-65 21.961036921425645 28.407199623882274 27.52607331213478 22.105690142557307 66-67 22.042310941616726 28.313957785675598 27.432398232949474 22.211333039758202 68-69 22.02222784631421 28.088049775344214 27.586777174565142 22.302945203776435 70-71 22.115260594772206 27.644375224447977 27.7243236259208 22.516040554859018 72-73 22.22348962876254 27.55650519083863 27.690179795955487 22.529825384443342 74-75 22.098163826836263 27.680202734416227 27.723890387189087 22.497743051558423 76-77 22.223774514084138 27.66582874890159 27.602803567038762 22.50759316997551 78-79 22.154641417808783 27.64302158394513 27.599182450597464 22.603154547648618 80-81 22.13684771962642 27.66078566416632 27.660452188746305 22.541914427460956 82-83 22.231180743611322 27.669822326876588 27.700904926603958 22.398092002908133 84-85 22.296218464638148 27.661391365259558 27.658418516873624 22.38397165322867 86-87 22.166058359351947 27.69466070819066 27.742279543219585 22.39700138923781 88-89 22.179901138104544 27.668211757842958 27.719450929402807 22.432436174649688 90-91 22.201974339934882 27.698761533294842 27.711806878590306 22.38745724817997 92-93 22.209816913008908 27.653828860960335 27.795960593687802 22.340393632342955 94-95 22.06534339974789 27.716113959759863 27.84011014940485 22.3784324910874 96-97 22.165597646992566 27.87853244459006 27.8541467855014 22.101723122915978 98-99 23.193000228702154 29.753120025889867 28.09061876031358 18.9632609850944 100 22.299176958194263 30.69030682922913 21.517354227634602 25.493161984942002 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4082.0 1 3335.5 2 3631.5 3 4800.0 4 6016.5 5 9773.0 6 13215.0 7 16168.5 8 18356.0 9 17759.5 10 14856.5 11 11562.0 12 11807.5 13 16760.0 14 30655.5 15 50699.0 16 67203.0 17 76903.5 18 80072.0 19 77743.0 20 72400.5 21 66838.5 22 64898.5 23 71134.5 24 85406.0 25 106858.0 26 134972.0 27 167115.5 28 201303.5 29 237995.0 30 273214.5 31 305933.5 32 339669.5 33 373769.0 34 407646.0 35 439653.0 36 476902.0 37 513307.5 38 538336.0 39 559219.0 40 581015.0 41 598480.0 42 610541.0 43 631772.0 44 669015.5 45 712650.5 46 721169.0 47 708023.0 48 690972.5 49 665608.5 50 651560.5 51 634679.0 52 609848.0 53 578642.5 54 542763.0 55 505043.5 56 466143.5 57 423575.0 58 378591.5 59 331363.0 60 279259.0 61 229235.5 62 185339.0 63 146462.0 64 112358.0 65 85219.0 66 65122.0 67 51116.0 68 40326.0 69 30865.0 70 23985.5 71 18826.5 72 14510.0 73 10909.5 74 8142.5 75 6141.5 76 4608.5 77 3429.0 78 2601.5 79 1936.0 80 1390.0 81 962.5 82 713.5 83 537.0 84 391.0 85 270.5 86 189.5 87 145.0 88 100.5 89 67.5 90 49.0 91 38.0 92 27.5 93 16.5 94 10.0 95 7.5 96 7.0 97 6.5 98 4.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006429077509384137 3 1.2520111994905817E-4 4 0.0 5 0.010710955811641925 6 0.012050607795096849 7 0.0 8 0.0 9 0.0 10-11 2.191019599108518E-5 12-13 2.5040223989811634E-5 14-15 9.390083996179363E-6 16-17 2.535322678968428E-4 18-19 9.327483436204835E-4 20-21 0.0 22-23 1.4401285496311973E-4 24-25 0.0 26-27 6.2660950525889855E-6 28-29 0.0 30-31 0.0 32-33 0.0 34-35 5.6846560238326045E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 2.2669459716823473E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.00618465648941477 52-53 5.762004602757065E-5 54-55 4.440808295429896E-5 56-57 0.0 58-59 6.952723738215351E-6 60-61 8.42887640338158E-5 62-63 9.968331568418352E-4 64-65 0.001340392446838387 66-67 0.0010372461303828542 68-69 0.009852820238508024 70-71 8.22170845018266E-4 72-73 5.605483652791979E-4 74-75 4.179164902552513E-4 76-77 7.676162655583824E-5 78-79 0.0 80-81 1.2946676015474493E-4 82-83 0.0 84-85 8.023881639400982E-6 86-87 1.826339097191882E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 580.0 20-21 2086.0 22-23 3900.0 24-25 6616.0 26-27 10351.0 28-29 17031.0 30-31 38944.0 32-33 48038.0 34-35 65516.0 36-37 95646.0 38-39 105579.0 40-41 110704.0 42-43 128388.0 44-45 152725.0 46-47 152851.0 48-49 136714.0 50-51 119257.0 52-53 113240.0 54-55 120834.0 56-57 128466.0 58-59 141257.0 60-61 145492.0 62-63 140840.0 64-65 159465.0 66-67 170988.0 68-69 177505.0 70-71 158119.0 72-73 130247.0 74-75 131558.0 76-77 137827.0 78-79 142774.0 80-81 143956.0 82-83 138982.0 84-85 141702.0 86-87 147615.0 88-89 158581.0 90-91 167342.0 92-93 179480.0 94-95 228562.0 96-97 569562.0 98-99 1275941.0 100-101 9629037.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.1264934999099 #Duplication Level Percentage of deduplicated Percentage of total 1 87.44804694780382 70.94353412290822 2 8.28221486687979 13.438141011255608 3 2.225569557199451 5.416579626472159 4 0.9019308594797736 2.9268195203581597 5 0.42725775828135576 1.7330961874999242 6 0.24383582056594044 1.1868927067312776 7 0.1346717893224903 0.7647815028764571 8 0.09078161836376625 0.5891835497679507 9 0.05906333325454419 0.4312441009222011 >10 0.18258595555754145 2.2535520357929726 >50 0.003156240072863781 0.17388290743101126 >100 8.557882114040319E-4 0.11739736058428707 >500 1.4733622590683404E-5 0.008677784617039053 >1k 1.4731384693496383E-5 0.016217582782772397 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.2600559974529085E-6 0.0 2 0.0 1.2520111994905817E-5 0.0 6.2600559974529085E-6 0.0 3 0.0 1.8780167992358725E-5 0.0 2.5040223989811634E-5 0.0 4 0.0 5.008044797962327E-5 0.0 2.5040223989811634E-5 0.0 5 0.0 6.260055997452908E-5 0.0 3.130027998726454E-5 0.0 6 5.008044797962327E-5 6.260055997452908E-5 0.0 3.130027998726454E-5 0.0 7 5.008044797962327E-5 6.260055997452908E-5 0.0 3.130027998726454E-5 0.0 8 5.008044797962327E-5 8.13807279668878E-5 0.0 3.756033598471745E-5 0.0 9 5.008044797962327E-5 1.502413439388698E-4 0.0 5.008044797962327E-5 0.0 10-11 5.008044797962327E-5 1.502413439388698E-4 0.0 6.573058797325554E-5 0.0 12-13 5.008044797962327E-5 1.502413439388698E-4 0.0 7.51206719694349E-5 0.0 14-15 5.008044797962327E-5 1.9719176391976663E-4 0.0 1.0329092395797298E-4 0.0 16-17 9.390083996179362E-5 2.0658184791594599E-4 0.0 1.3772123194396397E-4 0.0 18-19 9.390083996179362E-5 2.191019599108518E-4 0.0 1.7528156792868144E-4 0.0 20-21 9.390083996179362E-5 2.3162207190575762E-4 0.0 2.0971187591467243E-4 0.0 22-23 1.0016089595924654E-4 2.566622958955693E-4 0.0 2.3475209990448406E-4 0.0 24-25 1.095509799554259E-4 2.9735265987901316E-4 0.0 2.597923238942957E-4 0.0 26-27 1.1268100795415235E-4 3.192628558700983E-4 0.0 4.100336678331655E-4 0.0 28-29 1.1894106395160525E-4 3.192628558700983E-4 0.0 0.001192540667514779 0.0 30-31 1.220710919503317E-4 3.630832478522687E-4 0.0 0.003956355390390238 0.0 32-33 1.2833114794778464E-4 3.693433038497216E-4 0.0 0.010075560127900455 0.0 34-35 1.439812879414169E-4 4.100336678331655E-4 0.0 0.018079041720644 0.0 36-37 1.502413439388698E-4 4.601141158127888E-4 0.0 0.030589763631553635 0.0 38-39 1.502413439388698E-4 5.10194563792412E-4 0.0 0.05747357411261515 0.0 40-41 1.502413439388698E-4 5.915752917592999E-4 0.0 0.08406003193379766 0.0 42-43 1.5650139993632272E-4 6.197455437478379E-4 0.0 0.10197631219850788 0.0 44-45 1.5650139993632272E-4 6.792160757236405E-4 0.0 0.12485681686919825 0.0 46-47 1.5650139993632272E-4 7.199064397070845E-4 0.0 0.1478406124638466 0.0 48-49 1.5650139993632272E-4 7.261664957045374E-4 0.0 0.16579758309254028 0.0 50-51 1.5650139993632272E-4 7.825069996816136E-4 0.0 0.18341025064137403 0.0 52-53 1.5650139993632272E-4 7.950271116765194E-4 0.0 0.22867984558695476 0.0 54-55 1.5650139993632272E-4 7.950271116765194E-4 0.0 0.2791578071224163 0.0 56-57 1.5650139993632272E-4 7.950271116765194E-4 0.0 0.335560911659467 0.0 58-59 1.5650139993632272E-4 7.950271116765194E-4 0.0 0.37329026915611563 0.0 60-61 1.5650139993632272E-4 8.20067335666331E-4 0.0 0.38629240546282534 0.0 62-63 1.6902151193122852E-4 8.325874476612368E-4 0.0 0.4004370019890702 0.0 64-65 1.6902151193122852E-4 8.951880076357659E-4 0.0 0.40775500745009263 0.0 66-67 1.7215153992995497E-4 9.202282316255776E-4 0.0 0.4140307135875392 0.0 68-69 1.7528156792868144E-4 9.421384276166627E-4 0.0 0.42039406050895006 0.0 70-71 1.846716519248608E-4 9.609185956090214E-4 0.0 0.42576518855476464 0.0 72-73 2.1284190391339887E-4 9.796987636013802E-4 0.0 0.43010653738899823 0.0 74-75 2.1284190391339887E-4 0.0010016089595924654 0.0 0.43341810701165084 0.0 76-77 2.1284190391339887E-4 0.001039169295577183 0.0 0.43668585624232126 0.0 78-79 2.1284190391339887E-4 0.0010516894075720887 0.0 0.43911788799733176 0.0 80-81 2.1284190391339887E-4 0.0010579494635695416 0.0 0.4398377944370388 0.0 82-83 2.1284190391339887E-4 0.001067339547565721 0.0 0.4405295306247573 0.0 84-85 2.1284190391339887E-4 0.0010861197155580796 0.0 0.4407580226686644 0.0 86-87 2.1284190391339887E-4 0.0011142899675466178 0.0 0.4408456634526287 0.0 88 2.191019599108518E-4 0.0011643704155262409 0.0 0.44088322378861344 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19260 0.0 48.78198 1 GTATCAA 33760 0.0 35.884747 1 CTTATAC 22585 0.0 33.697666 1 TCAACGC 41055 0.0 28.871935 4 ATCAACG 41465 0.0 28.606754 3 TATACAC 29590 0.0 28.280085 3 CAACGCA 42100 0.0 28.105288 5 TATCAAC 42865 0.0 27.849981 2 AACGCAG 43680 0.0 27.094986 6 TTATACA 29785 0.0 26.6118 2 ACGCAGA 51020 0.0 23.193985 7 CGCAGAG 52770 0.0 22.40886 8 TACACAT 37875 0.0 22.005024 5 GTGGTAT 9960 0.0 21.850063 1 ACACATC 36105 0.0 21.483955 6 TGGTATC 9505 0.0 21.213137 2 GTACATG 43920 0.0 19.91612 1 CACATCT 39280 0.0 19.509178 7 GCAGAGT 60885 0.0 19.491295 9 ATACACA 46190 0.0 19.392462 4 >>END_MODULE