##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138948_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14022922 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.41785292680085 34.0 31.0 34.0 31.0 34.0 2 32.54694827511698 34.0 31.0 34.0 31.0 34.0 3 32.595346675963825 34.0 31.0 34.0 31.0 34.0 4 36.12624316101879 37.0 35.0 37.0 35.0 37.0 5 36.03583896423299 37.0 35.0 37.0 35.0 37.0 6 36.05034999125004 37.0 35.0 37.0 35.0 37.0 7 36.00579051926553 37.0 35.0 37.0 35.0 37.0 8 36.00419484612408 37.0 35.0 37.0 35.0 37.0 9 37.724372352638056 39.0 38.0 39.0 35.0 39.0 10-11 37.65426456768425 39.0 37.0 39.0 35.0 39.0 12-13 37.63122036905004 39.0 37.0 39.0 35.0 39.0 14-15 39.04386411048995 41.0 38.0 41.0 35.0 41.0 16-17 39.018299645394876 41.0 38.0 41.0 35.0 41.0 18-19 39.02194200324298 41.0 38.5 41.0 35.0 41.0 20-21 39.00324819341732 41.0 39.0 41.0 35.0 41.0 22-23 38.985203153021175 41.0 39.0 41.0 35.0 41.0 24-25 38.93862216975815 41.0 38.0 41.0 35.0 41.0 26-27 38.875172313172186 40.0 38.0 41.0 35.0 41.0 28-29 38.8157968199924 40.0 38.0 41.0 34.5 41.0 30-31 38.73598173604171 40.0 38.0 41.0 34.0 41.0 32-33 38.63755891530871 40.0 38.0 41.0 34.0 41.0 34-35 38.556214242524675 40.0 38.0 41.0 34.0 41.0 36-37 38.532689746357164 40.0 38.0 41.0 34.0 41.0 38-39 38.47615451412948 40.0 38.0 41.0 34.0 41.0 40-41 38.464898574359395 40.0 38.0 41.0 34.0 41.0 42-43 38.414291569467466 40.0 38.0 41.0 33.5 41.0 44-45 38.322524439577165 40.0 38.0 41.0 33.0 41.0 46-47 38.26504474731426 40.0 38.0 41.0 33.0 41.0 48-49 38.20448693548123 40.0 38.0 41.0 33.0 41.0 50-51 38.14286449480839 40.0 37.0 41.0 33.0 41.0 52-53 38.01346069648518 40.0 37.0 41.0 33.0 41.0 54-55 37.88059203177016 40.0 37.0 41.0 33.0 41.0 56-57 37.75391901832111 40.0 36.5 41.0 32.5 41.0 58-59 37.629266115112586 40.0 36.0 41.0 32.0 41.0 60-61 37.475254099925216 39.0 36.0 41.0 32.0 41.0 62-63 37.25169291409475 39.0 35.0 41.0 32.0 41.0 64-65 37.0285595846113 39.0 35.0 41.0 31.5 41.0 66-67 36.786098224996394 38.0 35.0 40.5 31.0 41.0 68-69 36.452191769883086 37.0 35.0 40.0 31.0 41.0 70-71 36.12675875207442 37.0 35.0 39.5 31.0 41.0 72-73 35.821271041586336 36.0 35.0 39.0 31.0 41.0 74-75 35.55833976536863 36.0 35.0 39.0 31.0 41.0 76-77 35.27784020432236 35.5 34.0 38.5 31.0 40.0 78-79 35.01710455760639 35.0 34.0 37.0 31.0 39.0 80-81 34.75550066102129 35.0 34.0 37.0 31.0 39.0 82-83 34.47630683271376 35.0 34.0 36.0 30.0 39.0 84-85 34.260283368770345 35.0 34.0 36.0 30.0 37.0 86-87 34.11389855546081 35.0 34.0 36.0 30.0 37.0 88-89 33.98754360843 35.0 34.0 35.0 30.0 37.0 90-91 33.86392376572874 35.0 34.0 35.0 30.0 36.0 92-93 33.8182191622608 35.0 34.0 35.0 30.5 36.0 94-95 33.7732041717419 35.0 34.0 35.0 31.0 36.0 96-97 33.776349971522066 35.0 34.0 35.0 31.0 36.0 98-99 33.92369303422737 35.0 34.0 35.0 31.0 36.0 100 31.138140097170396 33.0 29.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 29.0 19 79.0 20 161.0 21 499.0 22 1980.0 23 6521.0 24 16659.0 25 35781.0 26 64133.0 27 101602.0 28 147052.0 29 198031.0 30 254031.0 31 318137.0 32 395143.0 33 496519.0 34 648028.0 35 897991.0 36 1317401.0 37 2443629.0 38 3814077.0 39 2611911.0 40 253527.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.94076826498785 20.267273824956025 14.658970505576512 24.132987404479607 2 15.056685658520195 20.831377772192894 41.15857557033505 22.95336099895186 3 18.533131121280665 25.703194267264063 30.16068784045643 25.602986770998843 4 13.039386513024889 17.975326397736506 37.627257714191096 31.358029375047515 5 13.402281915945577 37.65940116234661 35.19514333133426 13.743173590373559 6 30.453873811857342 37.41397167471611 18.277865874193562 13.854288639232982 7 26.86291059737764 32.5341251987282 22.571208768044208 18.03175543584996 8 24.556372773092512 37.00287286772329 20.581666217639945 17.85908814154425 9 25.522063090702495 17.08692382372233 21.051133280210788 36.33987980536439 10-11 24.588195552452063 26.727165487240246 28.27923902856738 20.405399931740313 12-13 25.290527075373078 24.170225335047054 28.589184198710132 21.95006339086974 14-15 22.384682022762444 25.441020780119867 26.315884806319257 25.858412390798435 16-17 21.92544231441072 28.625146875960706 27.03691828936509 22.41249252026348 18-19 22.034462338653675 27.64838955682558 28.81820702391094 21.4989410806098 20-21 22.81794818956886 26.70734447337465 28.81329031492911 21.66141702212738 22-23 22.58463822912944 26.67590189817496 28.67093230557235 22.068527567123255 24-25 22.373614175421043 26.837623351381833 28.738042115896306 22.05072035730082 26-27 22.261214294581052 26.956123050561953 28.750323096489655 22.03233955836734 28-29 22.177495919161903 26.90634967692621 28.835759214478852 22.08039518943304 30-31 22.511898623044868 26.823657856496542 28.659245098471263 22.005198421987327 32-33 22.263604851747825 26.934906291635976 28.640909646594686 22.160579210021513 34-35 22.31592553141962 27.047478328783665 28.689341587472317 21.947254552324395 36-37 22.403876259558288 26.897295479640427 28.59688709869614 22.10194116210515 38-39 22.206875004091916 26.991538277437126 28.677121122953224 22.12446559551773 40-41 22.42243023216161 26.90604890916023 28.53332993418285 22.13819092449531 42-43 22.400812712770207 26.954945254252266 28.352173565690563 22.292068467286963 44-45 22.371123717314127 27.127635608593852 28.16479506181997 22.336445612272048 46-47 22.573741070141654 27.020182994591753 27.81763538592907 22.588440549337527 48-49 22.546458793100225 27.155347637378004 27.70880545699289 22.589388112528884 50-51 22.389916871415487 27.306010788878815 27.721711275455963 22.582361064249735 52-53 22.56764258067792 27.23212931252798 27.684573627907294 22.51565447888681 54-55 22.553554936287863 27.170223531526094 27.59514671226031 22.68107481992573 56-57 22.584079981736483 27.331421313773802 27.553611181986692 22.530887522503026 58-59 22.433658372570225 27.411483740895864 27.700102586641506 22.454755299892405 60-61 22.606133760619777 27.47868560541139 27.5005239887739 22.41465664519493 62-63 22.506054360391143 27.67186399605366 27.432160499913195 22.389921143642006 64-65 22.48369238871825 27.543264621750314 27.454524228699313 22.51851876083213 66-67 22.533384179280716 27.535633823242023 27.34882041395928 22.582161583517983 68-69 22.435647597781287 27.46641843137049 27.50096935582389 22.596964615024334 70-71 22.493579628448536 27.23212516769596 27.52896570363698 22.745329500218524 72-73 22.597005374334188 27.26454177605956 27.419983150662215 22.718469698944038 74-75 22.398048579023914 27.404913383224105 27.486707070260973 22.71033096749101 76-77 22.53910704844515 27.351130976115606 27.414448571429446 22.6953134040098 78-79 22.45961737925976 27.330447592435508 27.423429867590155 22.786505160714572 80-81 22.519247307552334 27.37492526550916 27.404591715647143 22.701235711291368 82-83 22.53670849378578 27.337290585341982 27.48077490915869 22.645226011713543 84-85 22.595263650430155 27.36263073009032 27.407165651522586 22.63493996795694 86-87 22.4479538558379 27.410375309076922 27.49766743978597 22.644003395299205 88-89 22.46786758813948 27.373112951382765 27.467505994346237 22.691513466131514 90-91 22.54300060549281 27.40919408793333 27.475913935851125 22.571891370722735 92-93 22.576625678000035 27.358143584376133 27.457725778712373 22.607504958911466 94-95 22.414894929286223 27.440046845746924 27.48272411518981 22.662334109777046 96-97 22.49975308805128 27.571407110773787 27.550993386964663 22.377846414210275 98-99 23.491120766221247 29.4106663990714 27.802429038864478 19.295783795842876 100 22.585562893313753 30.365364149786263 21.16989093701142 25.879182019888564 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3814.0 1 3081.0 2 3473.0 3 4686.0 4 5889.0 5 9637.0 6 13206.5 7 16748.0 8 19788.0 9 19553.0 10 16375.5 11 12675.0 12 12634.0 13 17387.5 14 30878.0 15 50071.0 16 65698.5 17 74148.0 18 75475.0 19 71563.5 20 64803.5 21 57510.0 22 53988.5 23 57839.0 24 68667.0 25 86775.5 26 110389.5 27 135178.0 28 160195.5 29 189162.5 30 216698.5 31 243271.5 32 275105.0 33 306300.5 34 336507.5 35 365778.0 36 396892.5 37 425799.0 38 449310.5 39 471065.5 40 490378.0 41 507907.5 42 521394.0 43 538637.0 44 560211.5 45 581965.5 46 592891.5 47 593343.5 48 594943.0 49 590978.5 50 585257.0 51 577802.0 52 562062.0 53 537387.5 54 508319.5 55 477751.5 56 443627.0 57 405860.5 58 366085.0 59 323446.5 60 275700.5 61 228455.5 62 185416.0 63 147505.0 64 115367.5 65 88688.5 66 68087.0 67 53342.0 68 42103.5 69 32561.5 70 25212.5 71 19667.5 72 15317.0 73 11884.5 74 8874.5 75 6603.5 76 4969.0 77 3635.5 78 2737.0 79 2094.5 80 1560.5 81 1139.5 82 866.0 83 630.0 84 437.5 85 304.0 86 218.5 87 167.0 88 112.0 89 74.0 90 56.5 91 47.5 92 39.0 93 23.5 94 11.0 95 7.5 96 8.0 97 7.5 98 3.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006738966386606158 3 1.3549244586827196E-4 4 0.0 5 0.010404393606410989 6 0.01189481051096198 7 0.0 8 0.0 9 0.0 10-11 2.852472544595199E-5 12-13 2.4959134765207992E-5 14-15 0.0 16-17 2.4959134765207994E-4 18-19 9.698406651623678E-4 20-21 0.0 22-23 1.319554803607449E-4 24-25 0.0 26-27 7.138281504412814E-6 28-29 0.0 30-31 0.0 32-33 0.0 34-35 4.6771481556835535E-5 36-37 0.0 38-39 3.6372602540822697E-6 40-41 0.0 42-43 1.1070368873547161E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.005909556766358075 52-53 5.030854423674799E-5 54-55 3.122138486901634E-5 56-57 0.0 58-59 0.0 60-61 7.62456757666282E-5 62-63 9.802568175646467E-4 64-65 0.001398432863793825 66-67 9.626482958666898E-4 68-69 0.00938146489861836 70-71 7.561521318948983E-4 72-73 4.995344296420485E-4 74-75 4.0972150970214067E-4 76-77 6.537467709267829E-5 78-79 0.0 80-81 1.3819063612225663E-4 82-83 0.0 84-85 4.562069186698941E-6 86-87 1.9387955481930564E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 496.0 20-21 1788.0 22-23 3626.0 24-25 6066.0 26-27 9222.0 28-29 15476.0 30-31 33916.0 32-33 42285.0 34-35 56767.0 36-37 82716.0 38-39 96084.0 40-41 98146.0 42-43 114913.0 44-45 139435.0 46-47 139345.0 48-49 124532.0 50-51 111395.0 52-53 107020.0 54-55 113661.0 56-57 118880.0 58-59 117753.0 60-61 117017.0 62-63 114376.0 64-65 123341.0 66-67 131053.0 68-69 134392.0 70-71 128862.0 72-73 117613.0 74-75 119729.0 76-77 124390.0 78-79 129242.0 80-81 131437.0 82-83 126441.0 84-85 127316.0 86-87 133410.0 88-89 143005.0 90-91 151487.0 92-93 162323.0 94-95 204056.0 96-97 504167.0 98-99 1120990.0 100-101 8444753.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.00517210212168 #Duplication Level Percentage of deduplicated Percentage of total 1 88.59718668409482 73.54024728477094 2 7.699738771062757 12.78236283666886 3 2.0044950148838536 4.991503610648377 4 0.7785528517728125 2.5849565380799975 5 0.3528625836107945 1.4644709740506647 6 0.18886534205624034 0.9406080132902587 7 0.11051866667982457 0.6421534663779102 8 0.07244979723250687 0.48109663104384415 9 0.04255728302580701 0.31792271415802315 >10 0.14854141286468217 1.8968082598842255 >50 0.0031890043196336577 0.1814610366985828 >100 9.95792493447361E-4 0.1384111586054094 >500 3.120099742448446E-5 0.019900955630713674 >1k 1.5594905361485705E-5 0.01809652009218097 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.131181361487998E-6 2 0.0 7.131181361487998E-6 0.0 0.0 7.131181361487998E-6 3 0.0 1.4262362722975996E-5 0.0 0.0 7.131181361487998E-6 4 0.0 8.557417633785597E-5 0.0 0.0 7.131181361487998E-6 5 0.0 9.270535769934397E-5 0.0 0.0 7.131181361487998E-6 6 7.131181361487998E-6 9.270535769934397E-5 0.0 7.131181361487998E-6 7.131181361487998E-6 7 7.131181361487998E-6 9.270535769934397E-5 0.0 7.131181361487998E-6 7.131181361487998E-6 8 7.131181361487998E-6 9.983653906083197E-5 0.0 7.131181361487998E-6 1.4262362722975996E-5 9 7.131181361487998E-6 1.9254189676017595E-4 0.0 1.4262362722975996E-5 1.4262362722975996E-5 10-11 1.4262362722975996E-5 1.9254189676017595E-4 0.0 1.4262362722975996E-5 1.4262362722975996E-5 12-13 1.4262362722975996E-5 1.9254189676017595E-4 0.0 1.4262362722975996E-5 1.4262362722975996E-5 14-15 2.1393544084463992E-5 2.888128451402639E-4 0.0 1.4262362722975996E-5 1.7827953403719993E-5 16-17 3.2090316126695994E-5 2.923784358210079E-4 0.0 1.4262362722975996E-5 2.1393544084463992E-5 18-19 3.565590680743999E-5 3.280343426284479E-4 0.0 1.4262362722975996E-5 2.1393544084463992E-5 20-21 3.565590680743999E-5 3.565590680743999E-4 0.0 1.4262362722975996E-5 2.1393544084463992E-5 22-23 3.565590680743999E-5 3.9221497488183986E-4 0.0 1.4262362722975996E-5 3.209031612669599E-5 24-25 3.565590680743999E-5 4.385676537315119E-4 0.0 3.565590680743999E-5 4.2787088168927985E-5 26-27 4.2787088168927985E-5 4.5639560713523186E-4 0.0 7.131181361487997E-5 4.6352678849671984E-5 28-29 4.6352678849671984E-5 4.599611978159759E-4 0.0 1.9967307812166396E-4 4.9918269530415983E-5 30-31 5.704945089190398E-5 5.811912809612718E-4 0.0 7.666019963599598E-4 4.9918269530415983E-5 32-33 5.704945089190398E-5 6.061504157264798E-4 0.0 0.0022748468543146716 6.418063225339199E-5 34-35 6.774622293413598E-5 6.988557734258238E-4 0.0 0.0043642829932306546 6.418063225339199E-5 36-37 7.487740429562399E-5 7.986923124866557E-4 0.0 0.007519830745689094 6.418063225339199E-5 38-39 8.557417633785597E-5 8.307826286133518E-4 0.0 0.012172926584060013 6.418063225339199E-5 40-41 9.270535769934397E-5 9.127912142704637E-4 0.0 0.01708631054212524 6.418063225339199E-5 42-43 9.270535769934397E-5 9.448815303971596E-4 0.0 0.021643135432116073 6.418063225339199E-5 44-45 1.0696772042231997E-4 0.0010946363389884076 0.0 0.026531560255416097 6.418063225339199E-5 46-47 1.2123008314529596E-4 0.0011980384687299837 0.0 0.03239339133455923 8.200858565711198E-5 48-49 1.2123008314529596E-4 0.0012051696500914716 0.0 0.038429936357058825 8.557417633785597E-5 50-51 1.2123008314529596E-4 0.0013192685518752796 0.0 0.044084963176718804 8.557417633785597E-5 52-53 1.2123008314529596E-4 0.0013335309145982557 0.0 0.04966154700140242 9.270535769934397E-5 54-55 1.2836126450678395E-4 0.0013335309145982557 0.0 0.05487800616733089 1.0340212974157596E-4 56-57 1.4618921791050395E-4 0.0013406620959597437 0.0 0.06026561368593507 1.0696772042231997E-4 58-59 1.5688598995273597E-4 0.0013584900493634636 0.0 0.06623797807618127 1.0696772042231997E-4 60-61 1.6401717131422395E-4 0.0013870147748094156 0.0 0.0722531295545964 1.0696772042231997E-4 62-63 1.7827953403719995E-4 0.0013905803654901596 0.0 0.07776909833770737 1.0696772042231997E-4 64-65 1.7827953403719995E-4 0.0015831222622503356 0.0 0.08317809940039601 1.0696772042231997E-4 66-67 1.8184512471794396E-4 0.0015831222622503356 0.0 0.0887939047225678 1.1053331110306397E-4 68-69 1.8541071539868794E-4 0.0016187781690577756 0.0 0.09433483264044398 1.1409890178380796E-4 70-71 1.8541071539868794E-4 0.0016437373038229834 0.0 0.09945502085799236 1.2123008314529596E-4 72-73 1.8897630607943194E-4 0.0016473028945037276 0.0 0.10323098138890026 1.4975480859124796E-4 74-75 1.9254189676017595E-4 0.0017114835267571194 0.0 0.10652202158722697 1.4975480859124796E-4 76-77 1.9254189676017595E-4 0.0017827953403719995 0.0 0.10958842957266682 1.4975480859124796E-4 78-79 1.9254189676017595E-4 0.0018077544751372075 0.0 0.11154950444707601 1.4975480859124796E-4 80-81 2.1750103152538394E-4 0.0018113200658179515 0.0 0.1121734828162062 1.5688598995273594E-4 82-83 2.4246016629059193E-4 0.0018113200658179515 0.0 0.11294365040324691 1.6401717131422395E-4 84-85 2.4959134765207994E-4 0.0018255824285409274 0.0 0.11318967616021824 1.6401717131422395E-4 86-87 2.5672252901356795E-4 0.0018612383353483674 0.0 0.11328594710859834 1.6401717131422395E-4 88 2.5672252901356795E-4 0.0019539436930477113 0.0 0.11330020947132131 1.6401717131422395E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19305 0.0 51.84611 1 GTATCAA 35145 0.0 36.73376 1 TCAACGC 43370 0.0 29.173195 4 ATCAACG 43550 0.0 29.071949 3 CAACGCA 44390 0.0 28.521818 5 TATCAAC 44880 0.0 28.503075 2 AACGCAG 46145 0.0 27.48848 6 ACGCAGA 52985 0.0 23.905567 7 TGGTATC 8710 0.0 23.688345 2 GTGGTAT 9500 0.0 23.358438 1 CGCAGAG 54835 0.0 23.152788 8 CTTATAC 9195 0.0 22.393084 1 GTACATG 46585 0.0 20.807314 1 TACATGG 46355 0.0 20.483622 2 GCAGAGT 62370 0.0 20.294926 9 GAGTACT 35630 0.0 19.506094 12-13 ACATGGG 47470 0.0 19.398067 3 TATACAC 14125 0.0 18.868795 3 CAGAGTA 60415 0.0 18.432863 10-11 AGAGTAC 56590 0.0 18.209648 10-11 >>END_MODULE