##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138947_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15821920 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43502033887164 34.0 31.0 34.0 31.0 34.0 2 32.56301378088121 34.0 31.0 34.0 31.0 34.0 3 32.61038761414544 34.0 31.0 34.0 31.0 34.0 4 36.135229289492045 37.0 35.0 37.0 35.0 37.0 5 36.045737116607846 37.0 35.0 37.0 35.0 37.0 6 36.05982308089031 37.0 35.0 37.0 35.0 37.0 7 36.01593592939415 37.0 35.0 37.0 35.0 37.0 8 36.01342523536967 37.0 35.0 37.0 35.0 37.0 9 37.73440511644604 39.0 38.0 39.0 35.0 39.0 10-11 37.66705914958488 39.0 37.0 39.0 35.0 39.0 12-13 37.64545447075955 39.0 37.0 39.0 35.0 39.0 14-15 39.06195584985893 41.0 38.0 41.0 35.0 41.0 16-17 39.038771274282766 41.0 38.0 41.0 35.0 41.0 18-19 39.04442087306724 41.0 38.5 41.0 35.0 41.0 20-21 39.02750202189777 41.0 39.0 41.0 35.0 41.0 22-23 39.01005273430306 41.0 39.0 41.0 35.0 41.0 24-25 38.965422245266815 41.0 38.5 41.0 35.0 41.0 26-27 38.90317107581686 41.0 38.0 41.0 35.0 41.0 28-29 38.84408694964576 40.0 38.0 41.0 35.0 41.0 30-31 38.76142214028155 40.0 38.0 41.0 34.5 41.0 32-33 38.661654194854876 40.0 38.0 41.0 34.0 41.0 34-35 38.58364714951848 40.0 38.0 41.0 34.0 41.0 36-37 38.5621588477433 40.0 38.0 41.0 34.0 41.0 38-39 38.51660970868676 40.0 38.0 41.0 34.0 41.0 40-41 38.49084769253901 40.0 38.0 41.0 34.0 41.0 42-43 38.437883456329104 40.0 38.0 41.0 34.0 41.0 44-45 38.34970571762287 40.0 38.0 41.0 33.0 41.0 46-47 38.30218153715546 40.0 38.0 41.0 33.0 41.0 48-49 38.24478824684843 40.0 38.0 41.0 33.0 41.0 50-51 38.187208566526515 40.0 37.5 41.0 33.0 41.0 52-53 38.05927739986436 40.0 37.0 41.0 33.0 41.0 54-55 37.93199187171794 40.0 37.0 41.0 33.0 41.0 56-57 37.805180365134376 40.0 36.5 41.0 33.0 41.0 58-59 37.68251232572931 40.0 36.0 41.0 32.0 41.0 60-61 37.53599669923773 39.0 36.0 41.0 32.0 41.0 62-63 37.31635196618436 39.0 35.0 41.0 32.0 41.0 64-65 37.09709865038728 39.0 35.0 41.0 32.0 41.0 66-67 36.85640297406312 38.0 35.0 41.0 31.0 41.0 68-69 36.52669067057129 37.5 35.0 40.0 31.0 41.0 70-71 36.20039115523154 37.0 35.0 39.5 31.0 41.0 72-73 35.89581953196975 36.5 35.0 39.0 31.0 41.0 74-75 35.63657774837621 36.0 35.0 39.0 31.0 41.0 76-77 35.34917940474457 35.5 34.0 38.5 31.0 40.0 78-79 35.08566940041714 35.0 34.0 37.0 31.0 39.0 80-81 34.821800778082675 35.0 34.0 37.0 31.0 39.0 82-83 34.539167729067145 35.0 34.0 36.5 31.0 39.0 84-85 34.31878128752413 35.0 34.0 36.0 30.0 37.0 86-87 34.166686089914016 35.0 34.0 36.0 31.0 37.0 88-89 34.034685276008815 35.0 34.0 35.5 31.0 37.0 90-91 33.905560365812164 35.0 34.0 35.0 30.0 36.0 92-93 33.85262559742455 35.0 34.0 35.0 31.0 36.0 94-95 33.80541282814316 35.0 34.0 35.0 31.0 36.0 96-97 33.80931511609762 35.0 34.0 35.0 31.0 36.0 98-99 33.951533227940395 35.0 34.0 35.0 31.0 36.0 100 31.15661984114783 33.0 29.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 4.0 18 20.0 19 90.0 20 176.0 21 523.0 22 2105.0 23 6964.0 24 18126.0 25 38489.0 26 69830.0 27 110894.0 28 160972.0 29 217398.0 30 280539.0 31 352495.0 32 438364.0 33 551212.0 34 719593.0 35 1000129.0 36 1469911.0 37 2715521.0 38 4273061.0 39 3087458.0 40 308045.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.10883508449038 20.252371393610886 14.662152254593627 23.97664126730511 2 15.051779607986903 20.921938701338103 41.12859571832196 22.897685972353027 3 18.693488495589875 25.557156923550657 30.065044698518616 25.684309882340848 4 12.915303578832404 17.975258375721783 37.77998498285922 31.329453062586587 5 13.353180981908041 37.596106693616214 35.30621463298327 13.744497691492471 6 30.519551283631575 37.45715676008203 18.22993369988474 13.793358256401659 7 26.814160354748353 32.51509930526763 22.656535995631376 18.014204344352645 8 24.479437388129885 37.167638314439714 20.47271127650753 17.880213020922874 9 25.319670431907127 17.100415120288815 21.220149008464205 36.35976543933985 10-11 24.49879957633444 26.904371367459085 28.240511862218437 20.356317193988037 12-13 25.212862198187203 24.410547788006312 28.588490349887806 21.788099663918675 14-15 22.193636700683193 25.68902202628025 26.482573098912532 25.634768174124023 16-17 21.68958429718845 28.831422056038853 27.216076724131394 22.262916922641303 18-19 21.76613406971894 27.832447834735184 29.070171800485443 21.331246295060424 20-21 22.591996383528976 26.86454376817369 29.161033839438698 21.382426008858634 22-23 22.365995464857484 26.810212608156426 28.975713290539257 21.84807863644684 24-25 22.157483055530154 26.908495373066692 29.082466016522112 21.851555554881035 26-27 21.97022335316311 27.035906332813102 29.080121951562848 21.91374836246094 28-29 21.967078513431186 27.089883527112914 29.040999712423567 21.902038247032333 30-31 22.231473940812972 26.866657877851065 29.009435801792044 21.892432379543926 32-33 22.037105317052013 26.963442696299445 28.95035510235146 22.049096884297082 34-35 22.208238626113648 27.049421912054427 28.88511316552401 21.85722629630791 36-37 22.212982975631075 26.973939992017776 28.810129913239745 22.0029471191114 38-39 22.044707177385636 27.130673119260063 28.85097012459114 21.97364957876316 40-41 22.237923198091003 27.019888528059212 28.71481321038038 22.027375063469407 42-43 22.14071189171801 27.129748133603403 28.517061129140842 22.21247884553775 44-45 22.19029844247319 27.199990807964674 28.355260112414353 22.254450637147784 46-47 22.292831598295823 27.249193182021784 28.05386946938479 22.4041057502976 48-49 22.370326425773147 27.40900378519873 27.870809204955886 22.349860584072232 50-51 22.330664036701855 27.46198203500368 27.834953701661107 22.37240022663336 52-53 22.503088424985222 27.401603962019145 27.75252220654786 22.34278540644777 54-55 22.49241883130679 27.373563715600884 27.704704789632405 22.429312663459918 56-57 22.440160604547124 27.522659420988415 27.63235467743704 22.40482529702743 58-59 22.345651233613584 27.479049485501744 27.784678472692715 22.390620808191958 60-61 22.43960823081298 27.464473266363935 27.72548168269136 22.370436820131726 62-63 22.411158028907565 27.526600158479823 27.751456270714957 22.31078554189765 64-65 22.43224280497598 27.428541509610415 27.72491955280624 22.414296132607358 66-67 22.430194134464205 27.475131692176298 27.57635927862543 22.51831489473407 68-69 22.381940416817987 27.48528887045552 27.657996400509067 22.47477431221743 70-71 22.384440261900686 27.326377859483365 27.6839271435079 22.605254735108055 72-73 22.46119536615855 27.387262464694444 27.566293323054893 22.58524884609211 74-75 22.30697115171135 27.47668502416541 27.603985390710463 22.612358433412787 76-77 22.390546279464555 27.47284042405966 27.555613766304187 22.580999530171592 78-79 22.328119439086308 27.426898247630465 27.590512027804625 22.654470285478602 80-81 22.30880279443945 27.47038750176467 27.60744428156267 22.61336542223321 82-83 22.447077000046406 27.429124036410595 27.6633020983984 22.4604968651446 84-85 22.46217179462197 27.457971617281153 27.61334952271084 22.466507065386036 86-87 22.32272196444422 27.506327137006398 27.660825428201846 22.510125470347536 88-89 22.442223108607067 27.407864640553804 27.58792223261842 22.56199001822071 90-91 22.430331622142845 27.49797704139984 27.582557234271977 22.48913410218534 92-93 22.45159579208933 27.45717990383692 27.659935158776104 22.431289145297644 94-95 22.248178063448794 27.59917088206738 27.691009406251528 22.461641648232302 96-97 22.33654595499749 27.699998582236685 27.709553856890075 22.25390160587575 98-99 23.376867953499545 29.54559542913504 27.974056058129992 19.103480559235425 100 22.366921597243188 30.601687405061107 21.3831555888479 25.648235408847803 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 6399.0 1 4819.5 2 4446.0 3 5748.0 4 6914.0 5 10893.0 6 14997.0 7 19461.5 8 23538.5 9 23843.5 10 20052.5 11 15326.0 12 15108.5 13 20351.5 14 35822.5 15 58271.0 16 76448.5 17 86618.0 18 89389.0 19 86635.5 20 80302.0 21 72753.5 22 68878.5 23 73812.5 24 86948.5 25 107058.5 26 133825.5 27 163820.5 28 195823.5 29 231337.5 30 264974.0 31 297774.0 32 332934.5 33 365683.0 34 397111.0 35 427097.0 36 458753.5 37 489460.0 38 514805.0 39 537001.5 40 556641.0 41 574883.0 42 587873.0 43 601460.5 44 616505.5 45 633495.5 46 650679.0 47 664803.5 48 673517.5 49 669631.5 50 661228.0 51 650963.0 52 626789.0 53 593885.0 54 563056.0 55 530666.5 56 494604.0 57 453846.0 58 411486.5 59 362859.5 60 308745.0 61 260003.5 62 213124.0 63 171156.0 64 135847.5 65 102452.0 66 77290.0 67 59281.0 68 43849.0 69 32213.5 70 24349.5 71 18588.5 72 14162.5 73 10697.5 74 8061.0 75 6040.5 76 4419.0 77 3198.5 78 2424.5 79 1857.0 80 1411.0 81 1039.5 82 795.5 83 550.5 84 356.5 85 251.0 86 190.0 87 154.5 88 104.0 89 69.5 90 58.0 91 46.5 92 35.5 93 20.5 94 9.5 95 7.5 96 6.5 97 6.0 98 3.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006446752353696644 3 1.9593070878881958E-4 4 0.0 5 0.0110100417648427 6 0.012880864016503686 7 0.0 8 0.0 9 0.0 10-11 3.792207266880378E-5 12-13 3.476189994640347E-5 14-15 1.264069088960126E-5 16-17 2.5281381779202524E-4 18-19 8.658873259376864E-4 20-21 0.0 22-23 1.1063007049221657E-4 24-25 0.0 26-27 6.326666345061127E-6 28-29 0.0 30-31 0.0 32-33 0.0 34-35 4.147119378978443E-5 36-37 0.0 38-39 3.2282766039046655E-6 40-41 0.0 42-43 2.2953877429639235E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.005827609861218754 52-53 8.282959994442133E-5 54-55 5.920879839957921E-5 56-57 0.0 58-59 7.104758888284274E-6 60-61 1.0764849751403737E-4 62-63 8.84139721904721E-4 64-65 0.001156184077384132 66-67 9.280064432485608E-4 68-69 0.009206283088233645 70-71 8.239701223898006E-4 72-73 5.73115539748944E-4 74-75 3.6681399074895115E-4 76-77 7.417310456682243E-5 78-79 0.0 80-81 1.5188538121591922E-4 82-83 0.0 84-85 2.0468696301654543E-5 86-87 2.0718515636035847E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 563.0 20-21 1985.0 22-23 4246.0 24-25 6771.0 26-27 10467.0 28-29 18122.0 30-31 40450.0 32-33 50342.0 34-35 69597.0 36-37 101835.0 38-39 117619.0 40-41 119586.0 42-43 139578.0 44-45 167799.0 46-47 168575.0 48-49 150009.0 50-51 134689.0 52-53 129726.0 54-55 137768.0 56-57 141823.0 58-59 141126.0 60-61 137855.0 62-63 131444.0 64-65 139670.0 66-67 146478.0 68-69 148410.0 70-71 145044.0 72-73 136612.0 74-75 140097.0 76-77 145590.0 78-79 150260.0 80-81 152566.0 82-83 145455.0 84-85 145536.0 86-87 154284.0 88-89 163975.0 90-91 173785.0 92-93 183276.0 94-95 228156.0 96-97 562274.0 98-99 1245593.0 100-101 9392884.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.34442890960759 #Duplication Level Percentage of deduplicated Percentage of total 1 88.59575982376046 73.83963006324073 2 7.8710504572527595 13.120164105568739 3 1.9586698725796179 4.897326658578064 4 0.7244986565927661 2.41531707118008 5 0.32868534363149055 1.3697046127962351 6 0.1769066017539808 0.8846507816114947 7 0.10225879867952369 0.5965890823849206 8 0.0622173892064947 0.41483782173296674 9 0.041750642529991396 0.31317151124441767 >10 0.13344094618475702 1.7547211014136668 >50 0.0032556149980784085 0.17817964492607583 >100 0.0014507246367395782 0.16992401425499207 >500 2.758106800254131E-5 0.016315661946742516 >1k 2.7547125290726445E-5 0.029467869120737535 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.8961036334401894E-5 0.0 0.0 0.0 3 0.0 1.8961036334401894E-5 0.0 0.0 0.0 4 0.0 5.6883109003205676E-5 0.0 6.320345444800631E-6 0.0 5 0.0 6.320345444800631E-5 0.0 6.320345444800631E-6 0.0 6 3.792207266880379E-5 6.320345444800631E-5 0.0 6.320345444800631E-6 6.320345444800631E-6 7 4.4242418113604416E-5 6.320345444800631E-5 0.0 6.320345444800631E-6 6.320345444800631E-6 8 4.4242418113604416E-5 7.584414533760758E-5 0.0 6.320345444800631E-6 1.2640690889601262E-5 9 5.056276355840505E-5 1.1376621800641135E-4 0.0 6.320345444800631E-6 1.8961036334401894E-5 10-11 5.056276355840505E-5 1.1376621800641135E-4 0.0 9.480518167200947E-6 1.8961036334401894E-5 12-13 5.056276355840505E-5 1.1376621800641135E-4 0.0 1.2640690889601262E-5 1.8961036334401894E-5 14-15 5.056276355840505E-5 2.275324360128227E-4 0.0 1.2640690889601262E-5 2.212120905680221E-5 16-17 1.011255271168101E-4 2.3069260873522304E-4 0.0 1.2640690889601262E-5 3.1601727224003155E-5 18-19 1.011255271168101E-4 2.40173126902424E-4 0.0 1.8961036334401894E-5 4.4242418113604416E-5 20-21 1.011255271168101E-4 2.5913416323682586E-4 0.0 2.212120905680221E-5 4.4242418113604416E-5 22-23 1.011255271168101E-4 3.1917744496243183E-4 0.0 3.792207266880379E-5 5.3722936280805366E-5 24-25 1.011255271168101E-4 3.6025969035363595E-4 0.0 6.636362717040662E-5 7.900431806000789E-5 26-27 1.011255271168101E-4 3.855410721328385E-4 0.0 8.532466350480852E-5 8.532466350480851E-5 28-29 1.011255271168101E-4 3.918614175776391E-4 0.0 3.1601727224003155E-4 8.848483622720883E-5 30-31 1.011255271168101E-4 4.929869446944492E-4 0.0 0.001052337516559305 8.848483622720883E-5 32-33 1.011255271168101E-4 4.961471174168495E-4 0.0 0.0026703459504282667 9.164500894960916E-5 34-35 1.011255271168101E-4 6.067531627008606E-4 0.0 0.005072077219452506 9.480518167200947E-5 36-37 1.011255271168101E-4 7.205193807072719E-4 0.0 0.008554587559537655 9.480518167200947E-5 38-39 1.0744587256161073E-4 7.52121107931275E-4 0.0 0.014075409305571007 9.480518167200947E-5 40-41 1.0744587256161073E-4 8.21644907824082E-4 0.0 0.01992804918745639 9.480518167200947E-5 42-43 1.1376621800641135E-4 8.31125425991283E-4 0.0 0.025079130724968902 9.480518167200947E-5 44-45 1.1376621800641135E-4 8.848483622720883E-4 0.0 0.030979173197690293 9.480518167200947E-5 46-47 1.4852811795281482E-4 9.290907803856927E-4 0.0 0.03744488658772134 1.011255271168101E-4 48-49 1.5800863612001578E-4 9.354111258304934E-4 0.0 0.0440717687865948 1.3272725434081324E-4 50-51 1.7696967245441766E-4 0.0010586578620041056 0.0 0.05023410559527541 1.3272725434081324E-4 52-53 1.7696967245441766E-4 0.001061818034726506 0.0 0.05635536015856482 1.4852811795281482E-4 54-55 1.7696967245441766E-4 0.0010681383801713065 0.0 0.06264094370341905 1.643289815648164E-4 56-57 1.9593070878881955E-4 0.0010807790710609078 0.0 0.06933734970218533 1.6748915428721673E-4 58-59 2.1489174512322147E-4 0.0010934197619505092 0.0 0.07569561721965476 1.7064932700961704E-4 60-61 2.275324360128227E-4 0.0011155409710073114 0.0 0.08223085440957861 1.7696967245441766E-4 62-63 2.5281381779202524E-4 0.001150302870953715 0.0 0.0882193817185272 1.7696967245441766E-4 64-65 2.5281381779202524E-4 0.0012577487435153256 0.0 0.09391717313701498 1.7696967245441766E-4 66-67 2.559739905144255E-4 0.0012640690889601262 0.0 0.09959600351916834 1.8012984517681797E-4 68-69 2.622943359592262E-4 0.0012798699525721278 0.0 0.10574569963695936 1.832900178992183E-4 70-71 2.654545086816265E-4 0.00130199116162893 0.0 0.1112791620738823 1.832900178992183E-4 72-73 2.780951995712278E-4 0.0013177920252409317 0.0 0.11564652077623955 2.1489174512322147E-4 74-75 2.780951995712278E-4 0.0013462335797425344 0.0 0.11911639042543509 2.1489174512322147E-4 76-77 2.780951995712278E-4 0.0014062768614681405 0.0 0.12246301333845702 2.1805191784562178E-4 78-79 2.780951995712278E-4 0.0014283980705249427 0.0 0.12471621648952845 2.2121209056802209E-4 80-81 2.844155450160284E-4 0.0014283980705249427 0.0 0.12558526398818853 2.3069260873522304E-4 82-83 2.90735890460829E-4 0.0014378785886921437 0.0 0.126283662159839 2.464934723472246E-4 84-85 2.90735890460829E-4 0.0014536794523041451 0.0 0.12655227684124304 2.464934723472246E-4 86-87 2.9705623590562964E-4 0.001472640488638547 0.0 0.12664708202291503 2.464934723472246E-4 88 3.033765813504303E-4 0.0015548049794209553 0.0 0.12665340236835984 2.464934723472246E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 22455 0.0 50.623848 1 GTATCAA 40270 0.0 35.85997 1 TCAACGC 49630 0.0 28.5299 4 ATCAACG 49975 0.0 28.38312 3 TATCAAC 51495 0.0 27.880514 2 CAACGCA 50945 0.0 27.785263 5 AACGCAG 52750 0.0 26.830944 6 GTGGTAT 10295 0.0 26.516708 1 TGGTATC 10520 0.0 24.317774 2 ACGCAGA 60585 0.0 23.337421 7 CGCAGAG 64140 0.0 22.050457 8 GCAGAGT 71485 0.0 19.825785 9 GTACATG 52405 0.0 19.183056 1 GAGTACT 42150 0.0 18.952118 12-13 TACATGG 51765 0.0 18.870216 2 ACATGGG 52400 0.0 18.128954 3 CAGAGTA 69805 0.0 18.07234 10-11 AGAGTAC 65790 0.0 17.762873 10-11 GTACTTT 47295 0.0 16.878172 14-15 AGTACTT 45215 0.0 16.769455 12-13 >>END_MODULE