##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138946_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15661721 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42823933589418 34.0 31.0 34.0 31.0 34.0 2 32.55652823849946 34.0 31.0 34.0 31.0 34.0 3 32.605072328896675 34.0 31.0 34.0 31.0 34.0 4 36.132170915316394 37.0 35.0 37.0 35.0 37.0 5 36.041895587336796 37.0 35.0 37.0 35.0 37.0 6 36.05798909328036 37.0 35.0 37.0 35.0 37.0 7 36.01575695289171 37.0 35.0 37.0 35.0 37.0 8 36.01291658815784 37.0 35.0 37.0 35.0 37.0 9 37.73238630671559 39.0 38.0 39.0 35.0 39.0 10-11 37.66611143820018 39.0 37.0 39.0 35.0 39.0 12-13 37.646114402114556 39.0 37.0 39.0 35.0 39.0 14-15 39.06240441264406 41.0 38.0 41.0 35.0 41.0 16-17 39.039363234730075 41.0 38.0 41.0 35.0 41.0 18-19 39.04489589617897 41.0 38.5 41.0 35.0 41.0 20-21 39.02988696795575 41.0 39.0 41.0 35.0 41.0 22-23 39.012508321427234 41.0 39.0 41.0 35.0 41.0 24-25 38.970795509896554 41.0 38.5 41.0 35.0 41.0 26-27 38.91031408469735 41.0 38.0 41.0 35.0 41.0 28-29 38.85237029051861 40.0 38.0 41.0 35.0 41.0 30-31 38.77114411123133 40.0 38.0 41.0 34.5 41.0 32-33 38.6753967995627 40.0 38.0 41.0 34.0 41.0 34-35 38.6016833555356 40.0 38.0 41.0 34.0 41.0 36-37 38.57975053346868 40.0 38.0 41.0 34.0 41.0 38-39 38.537747831392444 40.0 38.0 41.0 34.0 41.0 40-41 38.516544129620684 40.0 38.0 41.0 34.0 41.0 42-43 38.46596929905169 40.0 38.0 41.0 34.0 41.0 44-45 38.38232122470008 40.0 38.0 41.0 33.0 41.0 46-47 38.33211835960664 40.0 38.0 41.0 33.0 41.0 48-49 38.281851701839386 40.0 38.0 41.0 33.0 41.0 50-51 38.22413986492002 40.0 38.0 41.0 33.0 41.0 52-53 38.096931347761675 40.0 37.0 41.0 33.0 41.0 54-55 37.98111407710858 40.0 37.0 41.0 33.0 41.0 56-57 37.85829241193967 40.0 37.0 41.0 33.0 41.0 58-59 37.738653708860944 40.0 36.0 41.0 32.5 41.0 60-61 37.59824912338291 39.5 36.0 41.0 32.0 41.0 62-63 37.38274670596206 39.0 35.5 41.0 32.0 41.0 64-65 37.16864525109629 39.0 35.0 41.0 32.0 41.0 66-67 36.93606841167405 38.5 35.0 41.0 31.5 41.0 68-69 36.60860163685585 37.5 35.0 40.0 31.0 41.0 70-71 36.28322162076979 37.0 35.0 40.0 31.0 41.0 72-73 35.977176358722616 36.5 35.0 39.0 31.0 41.0 74-75 35.714115723170494 36.0 35.0 39.0 31.0 41.0 76-77 35.42286788869262 36.0 34.5 38.5 31.0 40.5 78-79 35.152469435653515 35.0 34.0 37.0 31.0 39.5 80-81 34.88059740389944 35.0 34.0 37.0 31.0 39.0 82-83 34.59071730078455 35.0 34.0 36.5 31.0 39.0 84-85 34.36282837974581 35.0 34.0 36.0 31.0 37.0 86-87 34.2021417431459 35.0 34.0 36.0 31.0 37.0 88-89 34.065135424254336 35.0 34.0 35.5 31.0 37.0 90-91 33.93206372589054 35.0 34.0 35.0 31.0 36.0 92-93 33.876431621867596 35.0 34.0 35.0 31.0 36.0 94-95 33.82471400230169 35.0 34.0 35.0 31.0 36.0 96-97 33.823028308113095 35.0 34.0 35.0 31.0 36.0 98-99 33.962313123219246 35.0 34.0 35.0 31.0 36.0 100 31.1872025655445 33.0 29.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 7.0 18 27.0 19 80.0 20 171.0 21 525.0 22 2010.0 23 6749.0 24 17768.0 25 37317.0 26 68002.0 27 107799.0 28 157056.0 29 213687.0 30 275005.0 31 344770.0 32 430779.0 33 540404.0 34 707943.0 35 974283.0 36 1428045.0 37 2641830.0 38 4261865.0 39 3137968.0 40 307631.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.81040646810143 20.446022502890965 14.72780034837806 24.01577068062954 2 14.859774920876855 20.96461751586693 41.47898100437943 22.69662655887678 3 18.568958667668348 25.69884238516849 30.16677131695783 25.565427630205328 4 12.822511651178054 18.02672899102212 38.111335274073646 31.039424083726175 5 13.23727715760974 37.71451384779429 35.44531888020711 13.602890114388867 6 30.246020278974793 37.70019935163782 18.467964336120986 13.585816033266399 7 26.60623312086839 32.63069237410116 22.87179678401882 17.89127772101163 8 24.16390893440127 37.42662125062757 20.76125605864132 17.648213756329845 9 25.20713400526034 17.253902045630873 21.391729555136372 36.14723439397241 10-11 24.294403537186287 26.986912160444255 28.54242837022819 20.17625593214127 12-13 24.98604000308906 24.445575582061878 28.93214667320448 21.636237741644585 14-15 22.009484142898472 25.80520365546034 26.682671080655822 25.502641120985363 16-17 21.537307717774066 28.946979439433022 27.434999146643218 22.080713696149694 18-19 21.58524938861458 28.008185135568542 29.26691343219236 21.139652043624515 20-21 22.385516604845016 27.106780248526007 29.257264431126035 21.250438715502945 22-23 22.141332200227296 27.05159957082555 29.08992275057893 21.717145478368224 24-25 21.919890426563317 27.15176203333568 29.15819687279272 21.770150667308286 26-27 21.796524029772556 27.280668078351244 29.13776208093716 21.785045810939035 28-29 21.767742463225144 27.369410925300418 29.142326160748695 21.720520450725747 30-31 22.039967585574967 27.149489246068708 29.076097295027502 21.734445873328823 32-33 21.803065635422982 27.290268875251357 29.040517923009922 21.86614756631574 34-35 21.973158359070528 27.35842631413046 28.972862348041446 21.69555297875757 36-37 21.966439530090746 27.23405767932207 28.936626972315693 21.862875818271487 38-39 21.846711647271672 27.39245438790374 28.95801595791009 21.802818006914503 40-41 22.061466299598003 27.275527999461673 28.830157640311928 21.8328480606284 42-43 22.00707843141928 27.341429419190217 28.615956863950746 22.035535285439757 44-45 22.045521135782124 27.490745584921537 28.42304085362773 22.040692425668606 46-47 22.1438074031102 27.496017776032865 28.16416645451227 22.19600836634467 48-49 22.152281968555744 27.60677588211658 28.04823931882565 22.19270283050202 50-51 22.10436297283998 27.724655328177423 27.97369587673438 22.197285822248222 52-53 22.220904421077837 27.68455668722889 27.878979917510982 22.215558974182294 54-55 22.222107115794312 27.594911122190986 27.9099020082201 22.273079753794608 56-57 22.177447135712942 27.683658730441557 27.904035555309708 22.234858578535793 58-59 22.142724653921324 27.712413698577247 27.93710818008895 22.207753467412477 60-61 22.23444005721318 27.661094017235 27.91438771428627 22.19007821126555 62-63 22.205853766082974 27.75900835499865 27.880676000193148 22.154461878725225 64-65 22.16292736315428 27.689557937561727 27.882693838659385 22.26482086062461 66-67 22.205391235240757 27.69977237178996 27.79554777584047 22.299288617128816 68-69 22.19175031499022 27.68373399848178 27.824360820731464 22.300154865796536 70-71 22.158097353354652 27.559750388435177 27.85110580963898 22.43104644857119 72-73 22.218344524458907 27.579328199834702 27.81854515008192 22.38378212562447 74-75 22.103962546402368 27.70247581875278 27.786642692944703 22.40691894190015 76-77 22.1971836370392 27.644506909148376 27.73690341823426 22.421406035578162 78-79 22.154568884068183 27.63513779383842 27.763106962833362 22.447186359260034 80-81 22.17149468820586 27.669481277710517 27.731009871876367 22.42801416220725 82-83 22.19479112678509 27.65208475442289 27.834155389955534 22.318968728836488 84-85 22.297662653007194 27.644140796721988 27.740834002093294 22.31736254817752 86-87 22.10633912941737 27.71560917947037 27.84677023110801 22.33128146000425 88-89 22.180254353337638 27.644473701426904 27.80894273237483 22.36632921286063 90-91 22.190714891125435 27.71142919810049 27.778199044652506 22.31965686612157 92-93 22.209186906703955 27.670245494185675 27.841048323204664 22.27951927590571 94-95 22.09576723405866 27.73600260092471 27.864211900115816 22.30401826490082 96-97 22.136174873383528 27.875456950761603 27.893195879148138 22.095172296706735 98-99 23.165772851393545 29.727260632181206 28.206045234653093 18.900921281772153 100 22.23420453769644 30.68116891238623 21.58237943706053 25.5022471128568 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5115.0 1 3953.0 2 3887.5 3 5009.0 4 6172.0 5 10139.0 6 14059.0 7 17958.0 8 21183.0 9 20983.0 10 17530.0 11 13559.0 12 13735.5 13 19046.0 14 33576.0 15 54101.0 16 71137.0 17 81226.0 18 84223.0 19 81872.0 20 76609.0 21 70759.5 22 69716.5 23 76952.5 24 91256.5 25 112590.5 26 139512.5 27 170070.0 28 204176.0 29 240608.5 30 274680.5 31 309035.0 32 345601.0 33 379267.0 34 411946.5 35 442731.5 36 474197.5 37 505063.5 38 530853.0 39 553355.5 40 574032.0 41 591308.5 42 604210.0 43 619686.0 44 632406.0 45 643137.0 46 651683.0 47 654643.0 48 654919.5 49 646901.5 50 636424.0 51 623682.0 52 601202.0 53 570079.5 54 538341.0 55 504928.0 56 467481.0 57 426657.0 58 382137.0 59 334890.5 60 284166.0 61 236111.5 62 191167.0 63 151258.5 64 117282.5 65 88447.5 66 67012.0 67 51946.0 68 40191.5 69 30425.5 70 23281.5 71 17922.5 72 13534.0 73 10111.0 74 7558.5 75 5693.5 76 4222.5 77 3107.5 78 2338.5 79 1749.5 80 1301.5 81 945.0 82 724.0 83 522.5 84 365.0 85 263.0 86 197.5 87 159.0 88 105.0 89 64.0 90 45.5 91 33.0 92 26.5 93 21.0 94 15.0 95 11.0 96 10.0 97 8.5 98 3.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006423304309915877 3 2.234748020348466E-4 4 0.0 5 0.010969420282739041 6 0.012482663942232146 7 0.0 8 0.0 9 0.0 10-11 4.469496040696932E-5 12-13 3.511746889119019E-5 14-15 0.0 16-17 2.681697624418159E-4 18-19 0.0010215990950164418 20-21 0.0 22-23 1.2772652626732734E-4 24-25 3.19403925838369E-6 26-27 1.5977473551769043E-5 28-29 0.0 30-31 0.0 32-33 0.0 34-35 4.8325677955298036E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 2.9790811897933898E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0059804233222300026 52-53 8.700264070415065E-5 54-55 3.1605483776185276E-5 56-57 0.0 58-59 7.16294639347619E-6 60-61 7.957924283967676E-5 62-63 8.620029046575843E-4 64-65 0.0012317941561324909 66-67 0.0010507870730534748 68-69 0.009243178071294508 70-71 7.388373389044208E-4 72-73 4.5043544980888253E-4 74-75 3.306906096005164E-4 76-77 5.899654429708331E-5 78-79 0.0 80-81 1.1274860564202076E-4 82-83 0.0 84-85 8.247809732267024E-6 86-87 1.2939938066951906E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 534.0 20-21 1948.0 22-23 3780.0 24-25 6340.0 26-27 9865.0 28-29 16941.0 30-31 39537.0 32-33 48135.0 34-35 67264.0 36-37 99490.0 38-39 114538.0 40-41 116615.0 42-43 135194.0 44-45 161413.0 46-47 162886.0 48-49 146179.0 50-51 132131.0 52-53 127494.0 54-55 135671.0 56-57 140166.0 58-59 138507.0 60-61 135433.0 62-63 130685.0 64-65 136949.0 66-67 142972.0 68-69 146142.0 70-71 143379.0 72-73 135823.0 74-75 137758.0 76-77 143848.0 78-79 149327.0 80-81 149960.0 82-83 144573.0 84-85 144438.0 86-87 152771.0 88-89 162441.0 90-91 171153.0 92-93 181002.0 94-95 225350.0 96-97 557841.0 98-99 1234831.0 100-101 9330417.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.59577518817206 #Duplication Level Percentage of deduplicated Percentage of total 1 88.17278693132153 72.82699687094026 2 8.051635903988439 13.300622180456866 3 2.0686300860144167 5.125803165958073 4 0.7876063516111635 2.6021182861780816 5 0.3572172679079318 1.4752318576728278 6 0.18546384585485387 0.9191118070656782 7 0.11166012279881983 0.6455858080122504 8 0.06411373004053528 0.4236418586322564 9 0.04471463786428557 0.3323916158993151 >10 0.15059696787625443 1.929654149588499 >50 0.004219547588217232 0.23501724280008476 >100 0.0013401367732702107 0.1710246651607646 >500 0.0 0.0 >1k 1.447036033182813E-5 0.012800491635085447 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.1924971719263805E-5 0.0 0.0 0.0 3 0.0 3.1924971719263805E-5 0.0 0.0 0.0 4 0.0 9.577491515779141E-5 0.0 0.0 0.0 5 0.0 1.0854490384549692E-4 0.0 0.0 0.0 6 5.7464949094674844E-5 1.0854490384549692E-4 0.0 0.0 0.0 7 5.7464949094674844E-5 1.0854490384549692E-4 0.0 0.0 0.0 8 6.384994343852761E-5 1.2769988687705522E-4 0.0 0.0 0.0 9 6.384994343852761E-5 2.0431981900328834E-4 0.0 0.0 0.0 10-11 6.384994343852761E-5 2.0431981900328834E-4 0.0 0.0 0.0 12-13 6.384994343852761E-5 2.0431981900328834E-4 0.0 0.0 0.0 14-15 6.384994343852761E-5 3.384047002241963E-4 0.0 0.0 0.0 16-17 8.938992081393864E-5 3.5755968325575457E-4 0.0 0.0 0.0 18-19 8.938992081393864E-5 3.86292157803092E-4 0.0 0.0 0.0 20-21 9.577491515779141E-5 4.2779462103813493E-4 0.0 6.384994343852761E-6 0.0 22-23 9.577491515779141E-5 4.980295588205153E-4 0.0 6.384994343852761E-6 1.5962485859631902E-5 24-25 9.577491515779141E-5 5.682644966028957E-4 0.0 3.830996606311656E-5 3.1924971719263805E-5 26-27 9.577491515779141E-5 6.065744626660123E-4 0.0 7.342743495430674E-5 3.1924971719263805E-5 28-29 9.577491515779141E-5 6.097669598379386E-4 0.0 2.4901477941025767E-4 3.1924971719263805E-5 30-31 1.0535240667357054E-4 7.151193665115091E-4 0.0 0.0010822565412830429 3.1924971719263805E-5 32-33 1.0854490384549692E-4 7.151193665115091E-4 6.384994343852761E-6 0.003163764697379043 3.830996606311656E-5 34-35 1.0854490384549692E-4 8.204717731850797E-4 6.384994343852761E-6 0.005787997372702527 4.469496040696932E-5 36-37 1.0854490384549692E-4 8.970917053113129E-4 6.384994343852761E-6 0.009481716600621349 4.469496040696932E-5 38-39 1.0854490384549692E-4 9.194391855147975E-4 6.384994343852761E-6 0.01530163894504314 4.7887457578895704E-5 40-41 1.0854490384549692E-4 9.928666204691043E-4 6.384994343852761E-6 0.021424848520797936 5.1079954750822086E-5 42-43 1.0854490384549692E-4 0.0010375615808760736 6.384994343852761E-6 0.027062798526419928 5.1079954750822086E-5 44-45 1.1812239536127607E-4 0.0011365289932057914 6.384994343852761E-6 0.03335521045228682 5.1079954750822086E-5 46-47 1.2769988687705522E-4 0.001200378936644319 6.384994343852761E-6 0.040701146444889424 5.1079954750822086E-5 48-49 1.2769988687705522E-4 0.0012163414225039508 6.384994343852761E-6 0.04761928781645389 5.7464949094674844E-5 50-51 1.5962485859631902E-4 0.001395121264131828 6.384994343852761E-6 0.05426606692840461 5.7464949094674844E-5 52-53 1.7239484728402455E-4 0.0014046987556476072 6.384994343852761E-6 0.06092561602904304 6.065744626660123E-5 54-55 1.7239484728402455E-4 0.0014174687443353129 6.384994343852761E-6 0.06721164296056609 6.384994343852761E-5 56-57 1.7239484728402455E-4 0.001436623727366871 6.384994343852761E-6 0.07383288209514138 6.384994343852761E-5 58-59 1.7239484728402455E-4 0.0014398162245387975 6.384994343852761E-6 0.08092661081116181 6.384994343852761E-5 60-61 1.8516483597173008E-4 0.0014749336934299878 6.384994343852761E-6 0.08799479954980682 6.384994343852761E-5 62-63 2.107048133471411E-4 0.001503666167977325 6.384994343852761E-6 0.09460965369003828 6.384994343852761E-5 64-65 2.107048133471411E-4 0.0016217885633386011 6.384994343852761E-6 0.10085417815832629 6.384994343852761E-5 66-67 2.234748020348466E-4 0.001628173557682454 6.384994343852761E-6 0.10747860979007351 6.384994343852761E-5 68-69 2.234748020348466E-4 0.0016664835237455706 6.384994343852761E-6 0.11363693683471951 6.384994343852761E-5 70-71 2.234748020348466E-4 0.00171117848415254 6.384994343852761E-6 0.11909610699871362 6.384994343852761E-5 72-73 2.4582228223833126E-4 0.0017271409700121718 6.384994343852761E-6 0.12304841849755847 7.661993212623313E-5 74-75 2.4901477941025767E-4 0.0017686434332472147 6.384994343852761E-6 0.12661763033577217 7.661993212623313E-5 76-77 2.5539977375411044E-4 0.0018197233879980366 6.384994343852761E-6 0.13001763982387377 7.661993212623313E-5 78-79 2.5539977375411044E-4 0.0018324933766857422 6.384994343852761E-6 0.13238008773109927 7.661993212623313E-5 80-81 2.5539977375411044E-4 0.0018356858738576686 6.384994343852761E-6 0.13321332949297207 7.661993212623313E-5 82-83 2.5539977375411044E-4 0.0018516483597173007 6.384994343852761E-6 0.13400826128878174 8.300492647008589E-5 84-85 2.5539977375411044E-4 0.0018580333540611533 6.384994343852761E-6 0.13427323855405163 8.300492647008589E-5 86-87 2.5539977375411044E-4 0.001864418348405006 6.384994343852761E-6 0.1343147410172867 8.300492647008589E-5 88 2.8093975112952144E-4 0.0019091133088119754 6.384994343852761E-6 0.13432751100597437 8.300492647008589E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21010 0.0 49.633663 1 GTATCAA 37705 0.0 35.83053 1 ATCAACG 45320 0.0 29.122952 3 TCAACGC 45530 0.0 28.979416 4 CAACGCA 46695 0.0 28.21151 5 TATCAAC 47790 0.0 27.918352 2 AACGCAG 48480 0.0 27.246876 6 GTGGTAT 9835 0.0 26.731281 1 TGGTATC 9650 0.0 24.72359 2 ACGCAGA 55655 0.0 23.71606 7 CGCAGAG 57415 0.0 22.945265 8 GCAGAGT 66570 0.0 19.796026 9 GTACATG 48685 0.0 19.498798 1 TACATGG 48115 0.0 19.267921 2 GAGTACT 39345 0.0 18.88332 12-13 ACATGGG 48995 0.0 18.381166 3 CAGAGTA 64315 0.0 18.150492 10-11 AGAGTAC 60360 0.0 17.662735 10-11 GTACTTT 44300 0.0 16.824265 14-15 AGTACTT 42835 0.0 16.199892 12-13 >>END_MODULE