##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138945_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10941226 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.442781823536045 34.0 31.0 34.0 31.0 34.0 2 32.56968423831113 34.0 31.0 34.0 31.0 34.0 3 32.61907431580337 34.0 31.0 34.0 31.0 34.0 4 36.1463134935701 37.0 35.0 37.0 35.0 37.0 5 36.0630301394012 37.0 35.0 37.0 35.0 37.0 6 36.07719729032194 37.0 35.0 37.0 35.0 37.0 7 36.03412039930443 37.0 35.0 37.0 35.0 37.0 8 36.03197457030866 37.0 35.0 37.0 35.0 37.0 9 37.755860175084585 39.0 38.0 39.0 35.0 39.0 10-11 37.6909679500268 39.0 38.0 39.0 35.0 39.0 12-13 37.66761037565625 39.0 37.0 39.0 35.0 39.0 14-15 39.07965894315683 41.0 38.0 41.0 36.0 41.0 16-17 39.05880456175569 41.0 38.0 41.0 35.0 41.0 18-19 39.07169767812127 41.0 38.5 41.0 35.0 41.0 20-21 39.05649670353739 41.0 39.0 41.0 35.0 41.0 22-23 39.03996509352022 41.0 39.0 41.0 35.0 41.0 24-25 38.99474164779016 41.0 39.0 41.0 35.0 41.0 26-27 38.9362821864662 41.0 38.0 41.0 35.0 41.0 28-29 38.88017881593651 40.0 38.0 41.0 35.0 41.0 30-31 38.79136094967754 40.0 38.0 41.0 35.0 41.0 32-33 38.69175144186401 40.0 38.0 41.0 34.0 41.0 34-35 38.61468565309595 40.0 38.0 41.0 34.0 41.0 36-37 38.5982494449225 40.0 38.0 41.0 34.0 41.0 38-39 38.55630979478233 40.0 38.0 41.0 34.0 41.0 40-41 38.54310915915616 40.0 38.0 41.0 34.0 41.0 42-43 38.49825783216241 40.0 38.0 41.0 34.0 41.0 44-45 38.41723753456536 40.0 38.0 41.0 33.5 41.0 46-47 38.376357532763436 40.0 38.0 41.0 33.0 41.0 48-49 38.3326687861658 40.0 38.0 41.0 33.0 41.0 50-51 38.28217906439552 40.0 38.0 41.0 33.0 41.0 52-53 38.158692278117016 40.0 37.0 41.0 33.0 41.0 54-55 38.04762829786345 40.0 37.0 41.0 33.0 41.0 56-57 37.936669964377124 40.0 37.0 41.0 33.0 41.0 58-59 37.8242363803449 40.0 36.5 41.0 33.0 41.0 60-61 37.698063996366066 39.5 36.0 41.0 33.0 41.0 62-63 37.49857180682817 39.0 36.0 41.0 32.0 41.0 64-65 37.29861965820846 39.0 35.0 41.0 32.0 41.0 66-67 37.08055165928536 39.0 35.0 41.0 32.0 41.0 68-69 36.75893963712764 38.0 35.0 40.5 31.5 41.0 70-71 36.4462651451979 37.0 35.0 40.0 31.0 41.0 72-73 36.14286509352193 37.0 35.0 39.0 31.0 41.0 74-75 35.87872743155184 36.0 35.0 39.0 31.0 41.0 76-77 35.585857442147656 36.0 35.0 39.0 31.0 40.5 78-79 35.305114569466866 35.5 34.5 37.5 31.0 39.5 80-81 35.024632774572225 35.0 34.0 37.0 31.0 39.0 82-83 34.723152427373535 35.0 34.0 37.0 31.0 39.0 84-85 34.474401223548824 35.0 34.0 36.0 31.0 38.0 86-87 34.307185945430916 35.0 34.0 36.0 31.0 37.0 88-89 34.15565540212039 35.0 34.0 36.0 31.0 37.0 90-91 34.013752104957014 35.0 34.0 35.0 31.0 36.5 92-93 33.951881911469656 35.0 34.0 35.0 31.0 36.0 94-95 33.8889066189546 35.0 34.0 35.0 31.0 36.0 96-97 33.88087440167696 35.0 34.0 35.0 31.0 36.0 98-99 34.01212662211839 35.0 34.0 35.0 31.0 36.0 100 31.26065282362885 33.0 29.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 18.0 19 61.0 20 111.0 21 318.0 22 1260.0 23 4275.0 24 11186.0 25 24073.0 26 43077.0 27 70236.0 28 103092.0 29 140719.0 30 182529.0 31 231151.0 32 290652.0 33 367991.0 34 484525.0 35 674110.0 36 975356.0 37 1820958.0 38 2943625.0 39 2333765.0 40 238136.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.40430204074023 21.06507076994845 14.770483673401866 23.76014351590946 2 14.493735481704412 21.20180730214855 42.24188533875856 22.062571877388486 3 17.87470816750765 26.834952776695225 30.880374452254266 24.409964603542864 4 12.254412805292569 18.334471840724248 39.63288026405816 29.77823508992502 5 12.46099286955277 38.43193780760434 36.1238272038166 12.983242119026283 6 28.87755458349231 38.99712116605664 18.88393127288995 13.241392977561109 7 25.408660784449566 33.366370459763836 23.812843277343873 17.41212547844273 8 23.69498628398682 37.4946738144336 21.41356005259374 17.396779848985844 9 25.20587729382429 17.040594902253183 21.963224230995685 35.79030357292684 10-11 23.85972865463617 27.355667979515086 29.124633924591148 19.659969441257594 12-13 24.67084797939828 24.74441380902552 29.31742261672623 21.267315594849972 14-15 21.80351377473729 26.09579366113027 27.457213429026456 24.643479135105988 16-17 21.062492659629356 29.009775431499545 28.107219451605193 21.820512457265902 18-19 20.9774113482097 28.12549026561274 30.081603504499142 20.815494881678415 20-21 22.082879040324766 27.379078234248976 29.87791867024413 20.66012405518213 22-23 21.627644524688325 27.18007564763287 29.769181017243547 21.42309881043526 24-25 21.309676565411475 27.27617294559497 30.027256353052866 21.38689413594069 26-27 21.3680583646497 27.504751489190294 29.83879861896787 21.28839152719214 28-29 21.186581198013275 27.80107195644274 29.748297434356424 21.26404941118756 30-31 21.791402598799696 27.36769422042681 29.684451117525875 21.15645206324762 32-33 21.408198761329217 27.573924147604345 29.616513022527442 21.401364068538996 34-35 21.446968496158732 27.721848342691775 29.58453931586548 21.24664384528401 36-37 21.550997092967798 27.55479586508589 29.625079787072316 21.269127254873993 38-39 21.387597159968355 27.69440192133602 29.627227484858103 21.29077343383752 40-41 21.726662934519695 27.57418231891833 29.436547249759194 21.262607496802786 42-43 21.624894509243312 27.633552785848703 29.24001185543511 21.501540849472875 44-45 21.667987204796667 28.005227145475708 28.881259255661302 21.445526394066324 46-47 21.72861068823164 27.737230262904195 28.52742050576953 22.00673854309463 48-49 21.81495462798501 27.846784871948117 28.55068157960843 21.787578920458444 50-51 21.550074510241686 28.011394680123935 28.478746030283048 21.95978477935133 52-53 21.740438427699427 27.991773086119352 28.312912629007318 21.954875857173896 54-55 21.829569852518247 27.82901909922823 28.411000406193278 21.930410642060245 56-57 21.879096731031787 28.042591752112923 28.19393125358002 21.884380263275276 58-59 21.752348419798384 28.160180884250067 28.447602803618498 21.639867892333054 60-61 21.85220037235311 28.183454764828852 28.18416991838047 21.780174944437565 62-63 21.77167190216782 28.091112817412668 28.19937743855879 21.93783784186072 64-65 21.622729671146875 28.16484997372485 28.320630990492585 21.891789364635688 66-67 21.845720824898134 28.22430813787205 27.964558518047134 21.965412519182685 68-69 21.80656991026978 28.12452258356799 28.20445209991712 21.86445540624511 70-71 21.78121494483424 27.67697904031399 28.314201655677252 22.227604359174517 72-73 21.92878608710904 27.823155503610845 28.2893390484037 21.958719360876415 74-75 21.577491612765805 28.060840893954904 28.25646843148415 22.10519906179514 76-77 21.61872227447638 28.066777698579166 28.11608546849363 22.198414558450825 78-79 21.812396305882363 28.106523723040844 28.083412265348745 21.99766770572805 80-81 21.716947392623467 27.997945193116042 28.082759241082645 22.202348173177846 82-83 21.837566772571353 27.880508090660488 28.29466667905902 21.98725845770913 84-85 22.19396351505362 27.882684179615826 28.023038457570127 21.900313847760426 86-87 21.58328418527909 28.15252233352193 28.15975840385579 22.104435077343194 88-89 21.88036870194742 27.96614066112181 28.177979887907075 21.9755107490237 90-91 21.920379990484783 27.98721019252858 28.27084898724769 21.82156082973895 92-93 21.94538128341785 28.03157824706873 28.10873583165543 21.914304637857995 94-95 21.659502915007817 28.15264379001887 28.139215643012154 22.048637651961155 96-97 21.636112270265336 28.256908393406878 28.40595591956463 21.701023416763157 98-99 22.59830437758518 30.122223167580792 28.61485624166172 18.664616213172312 100 21.84798749282804 31.37535705568289 21.841137845126145 24.93551760636293 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2848.0 1 2325.5 2 3037.0 3 4362.5 4 5890.5 5 10409.0 6 14220.0 7 16656.5 8 17669.5 9 16205.5 10 13319.0 11 10275.0 12 10792.5 13 15819.0 14 29070.5 15 48099.5 16 63912.0 17 72786.5 18 74622.5 19 71150.0 20 64323.0 21 56685.0 22 53110.5 23 56779.5 24 67120.5 25 85489.0 26 113553.5 27 142655.5 28 162295.0 29 183071.5 30 202724.0 31 219303.5 32 246978.5 33 278779.0 34 311836.0 35 343084.5 36 376158.5 37 403382.5 38 410787.5 39 418942.0 40 435908.5 41 445200.5 42 447618.5 43 455859.0 44 465353.0 45 473108.5 46 474199.5 47 470454.0 48 465153.5 49 454252.5 50 438829.5 51 420620.0 52 402904.5 53 384658.0 54 360971.5 55 328666.0 56 294211.0 57 261832.5 58 231120.5 59 203366.5 60 173075.0 61 137863.5 62 104158.5 63 77329.5 64 57954.0 65 43669.5 66 32800.0 67 25276.5 68 19422.5 69 14425.5 70 11228.5 71 8612.0 72 6491.5 73 4792.0 74 3430.0 75 2556.5 76 1928.5 77 1438.5 78 1025.0 79 664.0 80 473.5 81 352.5 82 269.0 83 199.0 84 152.5 85 113.0 86 86.0 87 63.0 88 35.5 89 20.5 90 18.0 91 15.0 92 12.5 93 10.0 94 6.0 95 4.0 96 4.0 97 3.5 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006580615371622888 3 1.645153842905722E-4 4 0.0 5 0.011324142285334387 6 0.012612846128943868 7 0.0 8 0.0 9 0.0 10-11 3.198910250094459E-5 12-13 4.5698717858492276E-5 14-15 9.139743571698455E-6 16-17 1.9193461500566756E-4 18-19 8.271467932387102E-4 20-21 0.0 22-23 1.2341290433667005E-4 24-25 0.0 26-27 1.8297386973038114E-5 28-29 0.0 30-31 0.0 32-33 0.0 34-35 4.6171562537557676E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.33285213296823E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.006312125788242301 52-53 5.0400103743573545E-5 54-55 3.0540838547587666E-5 56-57 0.0 58-59 2.0804680304099932E-5 60-61 7.887716774176247E-5 62-63 8.983873415628803E-4 64-65 0.001364784707361681 66-67 0.0010598807052631012 68-69 0.009758491634238751 70-71 8.409131537194815E-4 72-73 5.185175875247824E-4 74-75 4.105014246394928E-4 76-77 1.211633411656779E-4 78-79 0.0 80-81 1.3020072750248314E-4 82-83 0.0 84-85 6.072787704693937E-6 86-87 1.6613399186386464E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 411.0 20-21 1384.0 22-23 2526.0 24-25 4797.0 26-27 7470.0 28-29 12979.0 30-31 31890.0 32-33 38779.0 34-35 51996.0 36-37 77878.0 38-39 91650.0 40-41 92732.0 42-43 108630.0 44-45 128526.0 46-47 129023.0 48-49 114111.0 50-51 101724.0 52-53 96375.0 54-55 103012.0 56-57 106122.0 58-59 103968.0 60-61 103939.0 62-63 100518.0 64-65 104060.0 66-67 110042.0 68-69 110431.0 70-71 109434.0 72-73 101974.0 74-75 102463.0 76-77 106670.0 78-79 109199.0 80-81 111601.0 82-83 105167.0 84-85 106710.0 86-87 109688.0 88-89 117801.0 90-91 122956.0 92-93 128977.0 94-95 156484.0 96-97 366931.0 98-99 828705.0 100-101 6321493.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.79795565312419 #Duplication Level Percentage of deduplicated Percentage of total 1 87.01258800938734 68.56414051227269 2 8.064124899990919 12.708731125014777 3 2.38272261409785 5.632610126381355 4 1.0260426111197423 3.2340024067691675 5 0.540297185878655 2.1287156846187023 6 0.3142016502230323 1.485506862024776 7 0.1940265903216361 1.0702229061783823 8 0.12627580522153722 0.7960220239927389 9 0.08002248660212022 0.5675047515473933 >10 0.2535105287410731 2.865111250910836 >50 0.0037195167859727356 0.19720203749324633 >100 0.002082194411750346 0.31290436816500156 >500 2.2700706085314464E-4 0.10689655503823038 >1k 1.362001349927512E-4 0.22915232556070764 >5k 2.2700022498484808E-5 0.10127706403200905 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 9.139743571698455E-6 0.0 0.0 0.0 6 0.0 9.139743571698455E-6 0.0 0.0 0.0 7 0.0 2.7419230715095364E-5 0.0 8.22576921452861E-5 0.0 8 0.0 2.7419230715095364E-5 0.0 9.139743571698455E-5 0.0 9 0.0 7.311794857358764E-5 0.0 1.2795641000377836E-4 0.0 10-11 0.0 7.311794857358764E-5 0.0 1.2795641000377836E-4 0.0 12-13 0.0 7.311794857358764E-5 0.0 1.2795641000377836E-4 0.0 14-15 0.0 8.682756393113532E-5 0.0 1.2795641000377836E-4 0.0 16-17 0.0 9.139743571698455E-5 0.0 1.325262817896276E-4 0.0 18-19 0.0 9.596730750283378E-5 0.0 1.9193461500566754E-4 0.0 20-21 0.0 1.0967692286038146E-4 0.0 2.3763333286415983E-4 0.0 22-23 0.0 1.325262817896276E-4 0.0 2.4220320465000904E-4 9.139743571698455E-6 24-25 0.0 1.7365512786227065E-4 0.0 2.8333205072265206E-4 9.139743571698455E-6 26-27 0.0 1.9193461500566756E-4 0.0 3.7472948643963664E-4 9.139743571698455E-6 28-29 0.0 1.9193461500566756E-4 0.0 9.505333314566394E-4 9.139743571698455E-6 30-31 0.0 2.1021410214906445E-4 0.0 0.0025728378154331153 9.139743571698455E-6 32-33 0.0 2.1021410214906445E-4 0.0 0.005854005757672861 9.139743571698455E-6 34-35 0.0 2.513429482217075E-4 0.0 0.010359899338520199 9.139743571698455E-6 36-37 0.0 2.9247179429435055E-4 0.0 0.016721160864422324 9.139743571698455E-6 38-39 0.0 2.9247179429435055E-4 0.0 0.026061978794698144 9.139743571698455E-6 40-41 0.0 3.1075128143774746E-4 0.0 0.03559473133997963 9.139743571698455E-6 42-43 0.0 3.2446089679529514E-4 0.0 0.04448770183524223 9.139743571698455E-6 44-45 0.0 3.564499992962397E-4 0.0 0.05394733643195013 9.139743571698455E-6 46-47 0.0 3.7472948643963664E-4 0.0 0.06397363513010333 9.139743571698455E-6 48-49 0.0 3.7472948643963664E-4 0.0 0.07382627870039427 9.139743571698455E-6 50-51 0.0 4.387076914415258E-4 0.0 0.08350526714282294 9.139743571698455E-6 52-53 0.0 4.387076914415258E-4 0.0 0.09284151520131291 9.139743571698455E-6 54-55 0.0 4.4327756322737506E-4 0.0 0.1014374440304953 9.139743571698455E-6 56-57 0.0 4.478474350132243E-4 0.0 0.10766160940282195 9.139743571698455E-6 58-59 0.0 4.478474350132243E-4 0.0 0.11439303054337786 9.139743571698455E-6 60-61 0.0 4.5241730679907355E-4 0.0 0.1207177330949932 9.139743571698455E-6 62-63 0.0 4.5698717858492274E-4 0.0 0.12698302731339248 9.139743571698455E-6 64-65 0.0 4.8440640930001814E-4 0.0 0.13302896768607103 9.139743571698455E-6 66-67 0.0 4.8440640930001814E-4 0.0 0.13923942344304013 9.139743571698455E-6 68-69 0.0 5.02685896443415E-4 0.0 0.14554584650751207 9.139743571698455E-6 70-71 0.0 5.255352553726611E-4 0.0 0.1513724330344698 9.139743571698455E-6 72-73 0.0 5.301051271585104E-4 0.0 0.15620278751211245 9.139743571698455E-6 74-75 0.0 5.438147425160581E-4 0.0 0.15989067404329277 9.139743571698455E-6 76-77 0.0 5.758038450170027E-4 0.0 0.1632540996776778 9.139743571698455E-6 78-79 0.0 6.032230757320981E-4 0.0 0.16556188492953167 9.139743571698455E-6 80-81 0.0 6.032230757320981E-4 0.0 0.16651241826098828 9.139743571698455E-6 82-83 0.0 6.032230757320981E-4 0.0 0.1674035432592289 9.139743571698455E-6 84-85 0.0 6.032230757320981E-4 0.0 0.1677828426174544 9.139743571698455E-6 86-87 0.0 6.123628193037964E-4 0.0 0.16787880992495724 9.139743571698455E-6 88 0.0 6.854807678773841E-4 0.0 0.16789708941210063 9.139743571698455E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15330 0.0 52.751194 1 GTATCAA 28890 0.0 38.047874 1 ATCAACG 36185 0.0 29.848608 3 TCAACGC 36695 0.0 29.411207 4 CAACGCA 37055 0.0 29.06963 5 TATCAAC 37595 0.0 29.006838 2 AACGCAG 38480 0.0 28.022818 6 ACGCAGA 43615 0.0 24.673416 7 CGCAGAG 44235 0.0 24.308886 8 GCAGAGT 50505 0.0 21.192728 9 TACATGG 35965 0.0 19.826912 2 ACATGGG 35430 0.0 19.575596 3 GTGGTAT 7850 0.0 19.506615 1 GAGTACT 31735 0.0 19.308622 12-13 GTACATG 38835 0.0 19.001062 1 CAGAGTA 49905 0.0 18.599737 10-11 TGGTATC 7760 0.0 18.506216 2 AGAGTAC 47175 0.0 18.426336 10-11 CATGGGG 25430 0.0 18.079227 4 GTACTTT 35650 0.0 17.189373 14-15 >>END_MODULE