##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138944_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18573829 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42313790010665 34.0 31.0 34.0 31.0 34.0 2 32.55437212219408 34.0 31.0 34.0 31.0 34.0 3 32.605392296871045 34.0 31.0 34.0 31.0 34.0 4 36.130429972193674 37.0 35.0 37.0 35.0 37.0 5 36.03947785887336 37.0 35.0 37.0 35.0 37.0 6 36.054000281794345 37.0 35.0 37.0 35.0 37.0 7 36.011229510081094 37.0 35.0 37.0 35.0 37.0 8 36.00783704856979 37.0 35.0 37.0 35.0 37.0 9 37.728678346290366 39.0 38.0 39.0 35.0 39.0 10-11 37.6641731761394 39.0 37.0 39.0 35.0 39.0 12-13 37.64263830575806 39.0 37.0 39.0 35.0 39.0 14-15 39.0615068384661 41.0 38.0 41.0 35.0 41.0 16-17 39.03626675469016 41.0 38.0 41.0 35.0 41.0 18-19 39.04029182674181 41.0 38.5 41.0 35.0 41.0 20-21 39.02423694614997 41.0 39.0 41.0 35.0 41.0 22-23 39.00727003971024 41.0 39.0 41.0 35.0 41.0 24-25 38.966709285745814 41.0 38.5 41.0 35.0 41.0 26-27 38.907001996617055 41.0 38.0 41.0 35.0 41.0 28-29 38.85116432772623 40.0 38.0 41.0 35.0 41.0 30-31 38.776969162065804 40.0 38.0 41.0 34.5 41.0 32-33 38.69275267144999 40.0 38.0 41.0 34.0 41.0 34-35 38.620762318938574 40.0 38.0 41.0 34.0 41.0 36-37 38.60163032119745 40.0 38.0 41.0 34.0 41.0 38-39 38.55907911625306 40.0 38.0 41.0 34.0 41.0 40-41 38.54235236287819 40.0 38.0 41.0 34.0 41.0 42-43 38.49408364119734 40.0 38.0 41.0 34.0 41.0 44-45 38.412806500328074 40.0 38.0 41.0 33.5 41.0 46-47 38.37104434920167 40.0 38.0 41.0 33.0 41.0 48-49 38.32018930787788 40.0 38.0 41.0 33.0 41.0 50-51 38.26172988277381 40.0 38.0 41.0 33.0 41.0 52-53 38.13444956732907 40.0 37.0 41.0 33.0 41.0 54-55 38.01457194080638 40.0 37.0 41.0 33.0 41.0 56-57 37.893315075466354 40.0 37.0 41.0 33.0 41.0 58-59 37.77477164828566 40.0 36.0 41.0 33.0 41.0 60-61 37.63635447582885 39.5 36.0 41.0 32.0 41.0 62-63 37.424720652830295 39.0 35.5 41.0 32.0 41.0 64-65 37.21327175880535 39.0 35.0 41.0 32.0 41.0 66-67 36.98496958453525 38.5 35.0 41.0 32.0 41.0 68-69 36.66281181547135 37.5 35.0 40.0 31.0 41.0 70-71 36.340868551535124 37.0 35.0 40.0 31.0 41.0 72-73 36.03722468797913 37.0 35.0 39.0 31.0 41.0 74-75 35.7713782514864 36.0 35.0 39.0 31.0 41.0 76-77 35.482208308860365 36.0 34.5 39.0 31.0 40.5 78-79 35.20771958556427 35.0 34.0 37.5 31.0 39.5 80-81 34.93020326320648 35.0 34.0 37.0 31.0 39.0 82-83 34.63543748757307 35.0 34.0 36.5 31.0 39.0 84-85 34.40244155373679 35.0 34.0 36.0 31.0 37.5 86-87 34.23580321399568 35.0 34.0 36.0 31.0 37.0 88-89 34.09203253068561 35.0 34.0 36.0 31.0 37.0 90-91 33.955170148248996 35.0 34.0 35.0 31.0 36.0 92-93 33.89562328203 35.0 34.0 35.0 31.0 36.0 94-95 33.842003675387815 35.0 34.0 35.0 31.0 36.0 96-97 33.837106742530636 35.0 34.0 35.0 31.0 36.0 98-99 33.973665341996266 35.0 34.0 35.0 31.0 36.0 100 31.185371723228386 33.0 29.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 29.0 19 103.0 20 221.0 21 586.0 22 2434.0 23 7967.0 24 20978.0 25 44652.0 26 79576.0 27 126270.0 28 184468.0 29 248759.0 30 323107.0 31 403788.0 32 502530.0 33 633858.0 34 828822.0 35 1137349.0 36 1673839.0 37 3094926.0 38 5023803.0 39 3844225.0 40 391538.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.16752819249063 20.817420037623908 14.56575270505613 24.449299064829336 2 14.703744476669964 21.013954871756656 41.821874847557545 22.460425804015834 3 18.61258431837235 25.816479439666594 30.014015980252612 25.556920261708445 4 12.815133594693911 18.091810794640136 38.42890445475729 30.66415115590867 5 13.249224265725179 37.619075285222046 35.6350628930733 13.496637555979484 6 29.953303904127885 38.021473031849645 18.686375209769512 13.338847854252956 7 26.26484824426886 32.42004112345387 23.4255467733659 17.889563858911377 8 23.57931689798587 38.02138482054508 21.142285739790108 17.25701254167894 9 24.931272921700742 17.369859494237833 21.84474725163024 35.85412033243119 10-11 24.26703896126061 27.158089141752544 28.739993005747362 19.83487889123948 12-13 24.717793042569127 24.432081825689696 29.19082712340692 21.659298008334254 14-15 21.833956360530525 25.901472760488573 26.79013717581535 25.47443370316555 16-17 21.531731416079168 28.936999109228413 27.550822301431833 21.980447173260593 18-19 21.545350032887956 28.17034426531452 29.18006130075862 21.104244401038912 20-21 22.25428262381422 27.34372398322909 29.108629034609322 21.293364358347368 22-23 21.99351304929225 27.303610100993563 28.918899168848334 21.78397768086585 24-25 21.831476369069847 27.360785584827596 29.04556943036293 21.762168615739625 26-27 21.8021282370449 27.536147887769285 28.896283155205143 21.765440719980667 28-29 21.72707790817628 27.61794779014895 28.921576293369128 21.733398008305645 30-31 22.004217679253596 27.415992505911763 28.882405722642428 21.697384092192213 32-33 21.77472422087802 27.54995712924377 28.846021802841744 21.82929684703647 34-35 21.897499900086856 27.60527225156736 28.8252368729411 21.671990975404682 36-37 21.916678720696897 27.50485614968774 28.757609806208873 21.82085532340649 38-39 21.806639091347048 27.644066800591677 28.809845762397586 21.73944834566369 40-41 22.080888827198038 27.5362155353183 28.622110634214227 21.760785003269444 42-43 21.94071321501818 27.591188363459807 28.514031244526667 21.954067176995352 44-45 22.03233885315374 27.72124761207459 28.33551125709466 21.910902277677014 46-47 22.065075191337936 27.713475000020676 28.043254539370967 22.17819526927042 48-49 22.057865997673193 27.79700923516527 28.020771185045607 22.12435358211593 50-51 22.00126390807204 27.879691961587778 27.982443481420628 22.136600648919558 52-53 22.105609503296897 27.87766857546109 27.853592772554524 22.16312914868749 54-55 22.11440721293384 27.785921196801116 27.916940786666643 22.182730803598393 56-57 22.107467113035884 27.83658432444236 27.911549191875253 22.144399370646507 58-59 22.083389015708203 27.94358544040439 27.94623941059079 22.02678613329662 60-61 22.19266524070602 27.911967188250014 27.860687347647684 22.034680223396283 62-63 22.150312615109435 27.95931085229949 27.81837081320265 22.07200571938842 64-65 22.102758276973034 27.915939517205985 27.87347222834614 22.10782997747484 66-67 22.115770882820293 27.899466483700348 27.780198713705996 22.20456391977337 68-69 22.0722490110638 27.858737831245346 27.8633990907445 22.205614066946357 70-71 22.056466187877103 27.696825281666026 27.895545518429177 22.351163012027694 72-73 22.142648444458228 27.689515224507343 27.86434139933306 22.303494931701366 74-75 21.957139826658263 27.842364039721225 27.8955016207144 22.304994512906113 76-77 22.088008704840764 27.815082561762228 27.76991196228437 22.326996771112633 78-79 22.002812831634238 27.784476203879322 27.79409515052552 22.418615813960912 80-81 22.022328554761618 27.846229102681185 27.838468997730047 22.292973344827146 82-83 22.04909033803614 27.807492917592096 27.920016620549916 22.22340012382185 84-85 22.200761682790564 27.805090340566696 27.821786335220043 22.172361641422693 86-87 21.99331305609959 27.858475483297195 27.91542588323156 22.23278557737165 88-89 22.072710292698165 27.784981406638842 27.865851088092647 22.276457212570342 90-91 22.11469756794627 27.86138730407197 27.867448337730444 22.156466790251315 92-93 22.11043267924998 27.814424285029293 27.91362378394207 22.161519251778657 94-95 22.005854921510906 27.89581730204108 27.91653219544151 22.181795581006504 96-97 22.015828061212357 28.034246372711802 27.972657352000823 21.97726821407502 98-99 23.064822598963122 29.881446280440766 28.24140843344598 18.812322687150132 100 22.146884627226125 30.801554886030285 21.623563119856087 25.427997366887507 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3336.0 1 2807.5 2 3667.5 3 5199.5 4 7070.0 5 12496.5 6 17051.0 7 19987.0 8 21516.0 9 20121.0 10 16792.5 11 13109.5 12 13395.0 13 18813.5 14 33294.0 15 54154.0 16 71753.0 17 82303.0 18 85524.5 19 83639.5 20 79386.0 21 75225.5 22 75999.5 23 86892.0 24 107705.5 25 136009.5 26 172123.0 27 213023.0 28 254397.5 29 300258.0 30 345177.0 31 386702.0 32 429951.0 33 471053.0 34 512309.5 35 551035.5 36 589217.0 37 623805.0 38 649607.0 39 670528.0 40 694563.5 41 717778.5 42 734624.0 43 752827.0 44 770216.5 45 786166.5 46 794858.0 47 795278.0 48 791780.5 49 780695.0 50 763591.0 51 740571.0 52 710337.5 53 675194.0 54 636490.0 55 589742.5 56 540175.0 57 489435.5 58 434174.5 59 377846.0 60 317248.0 61 257686.0 62 205297.5 63 161383.0 64 124171.0 65 94747.0 66 72353.0 67 56210.0 68 44032.5 69 33072.5 70 25223.0 71 19349.5 72 14568.5 73 10715.0 74 7911.0 75 5850.0 76 4302.0 77 3259.0 78 2446.5 79 1772.0 80 1317.0 81 942.0 82 703.5 83 511.5 84 369.5 85 291.5 86 243.0 87 194.5 88 119.5 89 68.5 90 44.5 91 28.0 92 19.0 93 10.0 94 4.0 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006713747606915085 3 1.6151758476940861E-4 4 0.0 5 0.011144713349089194 6 0.012140738455167213 7 0.0 8 0.0 9 0.0 10-11 4.0379396192352154E-5 12-13 2.4227637715411294E-5 14-15 5.38391949231362E-6 16-17 2.3689245766179927E-4 18-19 8.614271187701794E-4 20-21 0.0 22-23 1.4539640255912747E-4 24-25 2.6932366310561535E-6 26-27 1.077776530850208E-5 28-29 0.0 30-31 0.0 32-33 0.0 34-35 4.075313532888215E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 2.2354398814769776E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0057936929724310225 52-53 7.644973094987379E-5 54-55 5.342647269255739E-5 56-57 0.0 58-59 9.088938168438383E-6 60-61 7.96032476165563E-5 62-63 8.815827980862662E-4 64-65 0.0012436917408150162 66-67 0.0010423462975101443 68-69 0.009209851595843983 70-71 8.660730210077968E-4 72-73 5.65459966382261E-4 74-75 4.2961974323478617E-4 76-77 9.692535073524396E-5 78-79 0.0 80-81 1.541059949937469E-4 82-83 0.0 84-85 7.02102333100095E-6 86-87 1.848573859039773E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 616.0 20-21 2358.0 22-23 4355.0 24-25 7349.0 26-27 11090.0 28-29 18923.0 30-31 48303.0 32-33 59346.0 34-35 80364.0 36-37 122710.0 38-39 143418.0 40-41 143660.0 42-43 160852.0 44-45 191080.0 46-47 193574.0 48-49 178853.0 50-51 163280.0 52-53 157220.0 54-55 166919.0 56-57 173090.0 58-59 172322.0 60-61 169297.0 62-63 162903.0 64-65 168143.0 66-67 177408.0 68-69 179214.0 70-71 177862.0 72-73 168036.0 74-75 167958.0 76-77 174711.0 78-79 181973.0 80-81 183989.0 82-83 176127.0 84-85 176312.0 86-87 184682.0 88-89 196073.0 90-91 208044.0 92-93 217559.0 94-95 267864.0 96-97 650888.0 98-99 1448997.0 100-101 1.0936107E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.80008206184894 #Duplication Level Percentage of deduplicated Percentage of total 1 86.92373254012729 68.4959725728424 2 8.080738293707263 12.735256813289148 3 2.3445867943610934 5.542608953903446 4 1.0895401885404856 3.434234250666905 5 0.5451528093276304 2.147904305563238 6 0.3133514965911202 1.4815274187350072 7 0.19997289694924655 1.1030516482822403 8 0.12980263877650347 0.8182766869946406 9 0.08896031233605628 0.6309071921096052 >10 0.2798834552682902 3.2905675060146957 >50 0.003407372164449434 0.17715990297327655 >100 8.141186562557743E-4 0.10305587800916102 >500 4.28188984784241E-5 0.024032730249923584 >1k 1.4264295845005724E-5 0.015444140366356541 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 1.076783898462724E-5 2.153567796925448E-5 0.0 0.0 0.0 3 1.076783898462724E-5 2.153567796925448E-5 0.0 0.0 0.0 4 1.076783898462724E-5 3.2303516953881726E-5 0.0 0.0 0.0 5 1.076783898462724E-5 3.2303516953881726E-5 0.0 0.0 0.0 6 1.1306230933858603E-4 3.2303516953881726E-5 0.0 0.0 0.0 7 1.1306230933858603E-4 3.2303516953881726E-5 0.0 0.0 0.0 8 1.1306230933858603E-4 3.2303516953881726E-5 0.0 0.0 0.0 9 1.1306230933858603E-4 6.999095340007707E-5 0.0 0.0 5.38391949231362E-6 10-11 1.1575426908474284E-4 6.999095340007707E-5 0.0 0.0 5.38391949231362E-6 12-13 1.1844622883089965E-4 6.999095340007707E-5 0.0 0.0 1.0767838984627242E-5 14-15 1.2113818857705645E-4 9.691055086164516E-5 0.0 0.0 4.845527543082258E-5 16-17 1.9382110172329033E-4 1.076783898462724E-4 0.0 0.0 5.38391949231362E-5 18-19 1.9920502121560397E-4 1.2652210806937008E-4 0.0 2.69195974615681E-6 5.9223114415449824E-5 20-21 1.9920502121560397E-4 1.4536582629246775E-4 0.0 5.38391949231362E-6 5.9223114415449824E-5 22-23 2.0458894070791758E-4 1.5882562502325182E-4 0.0 1.6151758476940863E-5 8.075879238470431E-5 24-25 2.099728602002312E-4 1.7228542375403587E-4 0.0 3.768743644619534E-5 9.691055086164516E-5 26-27 2.099728602002312E-4 1.7766934324634948E-4 0.0 6.460703390776345E-5 9.691055086164516E-5 28-29 2.099728602002312E-4 1.7766934324634948E-4 0.0 2.3958441740795612E-4 1.0229447035395879E-4 30-31 2.099728602002312E-4 1.8574522248481992E-4 0.0 0.0010148688243011175 1.0229447035395879E-4 32-33 2.099728602002312E-4 1.884371822309767E-4 0.0 0.0028777049686416305 1.1306230933858603E-4 34-35 2.2074069918485842E-4 2.2343265893101525E-4 0.0 0.0053543079351058955 1.1844622883089965E-4 36-37 2.2074069918485842E-4 2.584281356310538E-4 0.0 0.009184966653887038 1.1844622883089965E-4 38-39 2.2074069918485842E-4 2.6919597461568103E-4 0.0 0.015147657491624372 1.292140678155269E-4 40-41 2.3150853816948568E-4 2.745798941079946E-4 0.0 0.021110348329361706 1.3998190680015413E-4 42-43 2.961155720772491E-4 2.7727185385415144E-4 0.0 0.027229172832376136 1.4805778603862457E-4 44-45 3.0688341106187636E-4 3.1495929030034677E-4 0.0 0.033813706371475696 1.56133665277095E-4 46-47 3.176512500465036E-4 3.4995476700038533E-4 0.0 0.041009314772952846 1.642095445155654E-4 48-49 3.2303516953881723E-4 3.4995476700038533E-4 0.0 0.04815915985874533 1.7766934324634948E-4 50-51 3.3380300852344446E-4 3.714904449696398E-4 0.0 0.05517171499748383 1.7766934324634948E-4 52-53 3.391869280157581E-4 3.714904449696398E-4 0.0 0.061357838494152175 1.8574522248481992E-4 54-55 3.391869280157581E-4 3.768743644619534E-4 0.0 0.06782392580442084 1.9651306146944715E-4 56-57 3.553386864926989E-4 3.768743644619534E-4 0.0 0.07503030204488262 1.9920502121560397E-4 58-59 3.661065254773262E-4 3.768743644619534E-4 0.0 0.08215861145270584 1.9920502121560397E-4 60-61 3.849502437004239E-4 3.82258283954267E-4 0.0 0.08912809523550583 2.0458894070791758E-4 62-63 3.8764220344658065E-4 3.957180826850511E-4 0.0 0.09557803078729754 2.2074069918485842E-4 64-65 3.903341631927375E-4 4.576331568466577E-4 0.0 0.1022379391992895 2.2074069918485842E-4 66-67 4.1456180090814875E-4 4.6301707633897136E-4 0.0 0.10895168680620458 2.2343265893101525E-4 68-69 4.2532963989277603E-4 4.657090360851282E-4 0.0 0.11586194747458911 2.288165784233289E-4 70-71 4.307135593850896E-4 4.68400995831285E-4 0.0 0.12185424986953416 2.6112009537721057E-4 72-73 4.4148139836971685E-4 4.710929555774418E-4 0.0 0.12638751008206223 2.7996381360030826E-4 74-75 4.576331568466578E-4 4.81860794562069E-4 0.0 0.1303554587478974 2.7996381360030826E-4 76-77 4.6301707633897136E-4 4.926286335466963E-4 0.0 0.13406767123784763 2.7996381360030826E-4 78-79 4.710929555774418E-4 5.007045127851667E-4 0.0 0.13664118475517353 2.7996381360030826E-4 80-81 4.7916883481591223E-4 5.007045127851667E-4 0.0 0.13738685760485897 2.8803969283877867E-4 82-83 4.845527543082258E-4 5.033964725313235E-4 0.0 0.13822405708591373 3.014994915695627E-4 84-85 4.845527543082258E-4 5.168562712621076E-4 0.0 0.13853363245672176 3.014994915695627E-4 86-87 5.033964725313235E-4 5.330080297390484E-4 0.0 0.13861977516859877 3.014994915695627E-4 88 5.060884322774803E-4 5.599276272006165E-4 0.0 0.1386251590880911 3.0688341106187636E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20865 0.0 46.43783 1 GTATCAA 36735 0.0 34.485672 1 TCAACGC 42935 0.0 28.715687 4 ATCAACG 43275 0.0 28.499653 3 CAACGCA 43940 0.0 28.04939 5 TATCAAC 45880 0.0 27.165604 2 AACGCAG 45670 0.0 27.047697 6 ACGCAGA 53240 0.0 23.174978 7 CGCAGAG 53855 0.0 22.871552 8 GCAGAGT 64155 0.0 19.167002 9 GTGGTAT 11790 0.0 19.101368 1 GTACATG 46980 0.0 18.560896 1 TACATGG 45985 0.0 18.34466 2 TGGTATC 11580 0.0 18.004519 2 GAGTACT 39425 0.0 17.973688 12-13 ACATGGG 46235 0.0 17.729172 3 AGAGTAC 57665 0.0 17.246244 10-11 CAGAGTA 63340 0.0 17.178179 10-11 TATACCG 1385 0.0 16.591068 5 CATGGGG 34970 0.0 16.212337 4 >>END_MODULE