##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138942_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15873562 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.439756684731506 34.0 31.0 34.0 31.0 34.0 2 32.56704783715212 34.0 31.0 34.0 31.0 34.0 3 32.61795531462945 34.0 31.0 34.0 31.0 34.0 4 36.144442627306965 37.0 35.0 37.0 35.0 37.0 5 36.05466618015541 37.0 35.0 37.0 35.0 37.0 6 36.071211111910486 37.0 35.0 37.0 35.0 37.0 7 36.02785978345629 37.0 35.0 37.0 35.0 37.0 8 36.022227525239764 37.0 35.0 37.0 35.0 37.0 9 37.74664262501384 39.0 38.0 39.0 35.0 39.0 10-11 37.68016419377075 39.0 37.0 39.0 35.0 39.0 12-13 37.66191948599817 39.0 37.0 39.0 35.0 39.0 14-15 39.08846703720312 41.0 38.0 41.0 36.0 41.0 16-17 39.063732450221316 41.0 38.0 41.0 35.0 41.0 18-19 39.06435984563515 41.0 38.5 41.0 35.0 41.0 20-21 39.0500851274512 41.0 39.0 41.0 35.0 41.0 22-23 39.03355912802692 41.0 39.0 41.0 35.0 41.0 24-25 38.99442352475515 41.0 39.0 41.0 35.0 41.0 26-27 38.934413235405714 41.0 38.0 41.0 35.0 41.0 28-29 38.87350728295098 40.0 38.0 41.0 35.0 41.0 30-31 38.79538157146962 40.0 38.0 41.0 34.5 41.0 32-33 38.70340454672176 40.0 38.0 41.0 34.0 41.0 34-35 38.62304991803386 40.0 38.0 41.0 34.0 41.0 36-37 38.599574793150225 40.0 38.0 41.0 34.0 41.0 38-39 38.54115854011478 40.0 38.0 41.0 34.0 41.0 40-41 38.53220233397394 40.0 38.0 41.0 34.0 41.0 42-43 38.48449113672662 40.0 38.0 41.0 34.0 41.0 44-45 38.39796877909931 40.0 38.0 41.0 33.0 41.0 46-47 38.3487741470701 40.0 38.0 41.0 33.0 41.0 48-49 38.29966590733209 40.0 38.0 41.0 33.0 41.0 50-51 38.22875803068715 40.0 38.0 41.0 33.0 41.0 52-53 38.103438197696505 40.0 37.0 41.0 33.0 41.0 54-55 37.977362139645884 40.0 37.0 41.0 33.0 41.0 56-57 37.84941358393621 40.0 37.0 41.0 33.0 41.0 58-59 37.73729917350302 40.0 36.0 41.0 32.0 41.0 60-61 37.59741479292184 39.5 36.0 41.0 32.0 41.0 62-63 37.39322126345471 39.0 35.5 41.0 32.0 41.0 64-65 37.19083006620684 39.0 35.0 41.0 32.0 41.0 66-67 36.962357873549635 38.5 35.0 41.0 31.5 41.0 68-69 36.63756512143566 37.5 35.0 40.0 31.0 41.0 70-71 36.31998319147931 37.0 35.0 40.0 31.0 41.0 72-73 36.01867608792567 37.0 35.0 39.0 31.0 41.0 74-75 35.75531793796595 36.0 35.0 39.0 31.0 41.0 76-77 35.46707428749527 36.0 34.5 39.0 31.0 40.5 78-79 35.193125015050526 35.0 34.0 37.5 31.0 39.5 80-81 34.91740867274599 35.0 34.0 37.0 31.0 39.0 82-83 34.62152729495398 35.0 34.0 36.5 31.0 39.0 84-85 34.38843053637267 35.0 34.0 36.0 31.0 37.5 86-87 34.22433413094447 35.0 34.0 36.0 31.0 37.0 88-89 34.07921802611655 35.0 34.0 36.0 31.0 37.0 90-91 33.94414923314663 35.0 34.0 35.0 31.0 36.0 92-93 33.88883285809975 35.0 34.0 35.0 31.0 36.0 94-95 33.83413828651308 35.0 34.0 35.0 31.0 36.0 96-97 33.82813125857264 35.0 34.0 35.0 31.0 36.0 98-99 33.97178613307446 35.0 34.0 35.0 31.0 36.0 100 31.184041195787877 33.0 29.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 27.0 19 93.0 20 164.0 21 514.0 22 2116.0 23 6876.0 24 18007.0 25 37961.0 26 68419.0 27 109109.0 28 159251.0 29 215469.0 30 276838.0 31 346500.0 32 431508.0 33 543046.0 34 714031.0 35 981964.0 36 1444262.0 37 2693124.0 38 4361239.0 39 3179861.0 40 283180.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.33414176351848 20.700363283300874 14.615383743106936 24.350111210073706 2 14.630046456942292 20.998854185153775 41.655312156265786 22.71578720163815 3 18.42473088372472 25.917116477375636 30.267151053807883 25.39100158509176 4 12.73334869640475 18.254592132503088 38.22824391903972 30.783815252052438 5 13.135575173243891 37.71231622488225 35.71923337956195 13.432875222311914 6 29.926428842308194 38.02594109607158 18.558866219498217 13.488763842122012 7 26.318787175808428 32.5411775882439 23.04484651901067 18.095188716937006 8 23.89293593964606 37.67620021265548 20.991312472903058 17.439551374795396 9 24.968145145998108 17.258621599865233 21.464974276095056 36.3082589780416 10-11 24.1572352056946 27.022188536570603 28.724944887903824 20.095631369830972 12-13 24.80332936100363 24.33287713437124 29.0386782571379 21.82511524748723 14-15 21.919914116298685 25.830363562449982 26.553761509942415 25.69596081130892 16-17 21.622881921579243 29.044213047295663 27.28072658332329 22.0521784478018 18-19 21.622719496718254 28.087188547643972 29.01064452734336 21.279447428294414 20-21 22.282866197722385 27.193831182137195 29.013349952325086 21.509952667815334 22-23 22.11739236786599 27.270486081662167 28.790679823221033 21.82144172725081 24-25 21.986524024156516 27.404599585626094 28.871138060933838 21.737738329283548 26-27 21.937239944444972 27.564079867399904 28.78883864912786 21.709841539027263 28-29 21.78041000570257 27.469450048819215 28.85355831295071 21.8965816325275 30-31 22.15344960342649 27.387986111791296 28.799991911499163 21.65857237328305 32-33 21.981069504629673 27.430826679019816 28.838307356269393 21.749796460081118 34-35 22.041878664101873 27.52012606525176 28.85150724472251 21.586488025923863 36-37 22.028170605710958 27.404757371013744 28.700518404649948 21.866553618625346 38-39 21.86437520077096 27.38296819787986 28.857073562479922 21.89558303886926 40-41 22.068207311724453 27.25311253514257 28.801982862458487 21.87669729067449 42-43 21.988035653894748 27.32945056276932 28.68216907775945 22.000344705576477 44-45 21.996222252235643 27.530721311249152 28.46486277239234 22.008193664122867 46-47 22.151871533952864 27.4701406428579 28.06168444278203 22.31630338040721 48-49 22.099196091173688 27.584556790615988 28.048045677317162 22.26820144089316 50-51 21.99305501795574 27.691949615074773 28.04349538404121 22.271499982928272 52-53 22.087041876614627 27.692686454767035 28.045475994958522 22.174795673659816 54-55 22.067509028491124 27.697678152732628 27.95662413000204 22.278188688774204 56-57 22.16580251222843 27.788437152019434 27.802886692471144 22.242873643280987 58-59 21.968845374411963 27.945813603071297 28.030971546471388 22.054369476045352 60-61 22.1831130553449 28.038730113250875 27.784195915970944 21.99396091543328 62-63 22.02520479128249 28.186492820986974 27.692228014133846 22.09607437359669 64-65 21.958258298367202 28.162625693650007 27.707970973503453 22.17114503447934 66-67 22.026990926045105 28.10938887582562 27.61898644370648 22.244633754422793 68-69 22.016745475838235 27.961840301208923 27.73217998839218 22.28923423456066 70-71 22.064611808815187 27.752343315914075 27.737169588950362 22.445875286320383 72-73 22.14172751647266 27.66992167525013 27.72761784746889 22.46073296080832 74-75 22.096755265538135 27.828719497952726 27.705317026582684 22.36920820992646 76-77 22.232530407495418 27.752251175064536 27.579315998816668 22.435902418623378 78-79 22.109827830128847 27.767773872325975 27.649869921854563 22.472528375690615 80-81 22.153615020405116 27.784566511955124 27.670350015408896 22.391468452230864 82-83 22.142116610211307 27.84464674805805 27.712760232769785 22.300476408960858 84-85 22.300236522412856 27.83853135055045 27.636347068532658 22.224885058504032 86-87 22.11946225288527 27.878556053940002 27.751406117828502 22.250575575346225 88-89 22.161614681836376 27.81321585387077 27.73651375690076 22.288655707392095 90-91 22.17689261896288 27.904106199063673 27.698551331721255 22.22044985025219 92-93 22.249002075742595 27.877333310168368 27.726503476708057 22.147161137380984 94-95 22.120262384115915 27.93695746345506 27.806703727854615 22.13607642457441 96-97 22.14381748135455 28.033547882703136 27.903583229929513 21.919051406012805 98-99 23.128513985354786 29.885546994587305 28.136375263889686 18.849563756168227 100 22.268732103290155 30.878022507013057 21.590121067441252 25.263124322255532 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3072.0 1 2582.0 2 3193.5 3 4402.5 4 5674.5 5 9691.5 6 13415.0 7 16307.0 8 18032.0 9 17183.0 10 14387.0 11 11160.0 12 11357.5 13 16176.5 14 29596.5 15 49061.5 16 65509.5 17 75194.0 18 77956.0 19 75309.0 20 69528.0 21 63332.5 22 61029.0 23 67010.5 24 81642.0 25 103425.0 26 131163.0 27 163287.0 28 198246.0 29 237077.0 30 274898.5 31 311124.5 32 348140.0 33 380434.5 34 413493.5 35 447305.5 36 481205.5 37 515726.5 38 542648.0 39 561929.0 40 583359.5 41 604828.5 42 620099.5 43 633320.5 44 649217.0 45 667848.0 46 686484.5 47 696442.5 48 694205.0 49 680142.5 50 656708.5 51 632389.0 52 604652.0 53 571568.5 54 536480.5 55 497645.0 56 455605.5 57 410169.5 58 362475.0 59 315904.0 60 266262.0 61 217626.5 62 175116.5 63 137437.0 64 103721.0 65 77486.5 66 59451.5 67 47102.0 68 37093.0 69 28153.0 70 21386.0 71 16217.0 72 12244.5 73 9147.0 74 6811.0 75 5122.0 76 3844.5 77 2861.0 78 2194.5 79 1634.5 80 1206.0 81 886.0 82 667.5 83 488.0 84 345.5 85 245.5 86 177.5 87 133.0 88 92.5 89 55.5 90 36.5 91 29.0 92 22.5 93 15.5 94 8.0 95 4.5 96 4.0 97 4.0 98 2.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006394279998402375 3 2.078928472386979E-4 4 0.0 5 0.010823027622911607 6 0.012530268883568792 7 0.0 8 0.0 9 0.0 10-11 3.1498916248287564E-5 12-13 3.4648807873116316E-5 14-15 1.8899349748972537E-5 16-17 2.2049241373801293E-4 18-19 9.260681376996542E-4 20-21 0.0 22-23 1.291726344686337E-4 24-25 3.151419829660086E-6 26-27 3.1528811248420482E-6 28-29 0.0 30-31 0.0 32-33 0.0 34-35 6.991191416596516E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.2580856726659975E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.006415853879164524 52-53 8.173591833165003E-5 54-55 3.430928378340824E-5 56-57 0.0 58-59 3.4872211478481337E-6 60-61 6.335807736112763E-5 62-63 9.910489453853885E-4 64-65 0.0013836424782542303 66-67 0.001140558810815003 68-69 0.010250399961384427 70-71 8.879936925808015E-4 72-73 5.307944909512623E-4 74-75 3.660213408554115E-4 76-77 6.858571007585808E-5 78-79 0.0 80-81 1.2451617683040335E-4 82-83 0.0 84-85 1.19271020294799E-5 86-87 1.8490409225717329E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 552.0 20-21 1965.0 22-23 3863.0 24-25 6578.0 26-27 9851.0 28-29 16486.0 30-31 39048.0 32-33 46778.0 34-35 64147.0 36-37 93978.0 38-39 104620.0 40-41 109997.0 42-43 124682.0 44-45 146661.0 46-47 148189.0 48-49 134035.0 50-51 114173.0 52-53 106752.0 54-55 112015.0 56-57 118876.0 58-59 131099.0 60-61 131704.0 62-63 125561.0 64-65 136600.0 66-67 145730.0 68-69 149587.0 70-71 142357.0 72-73 125844.0 74-75 127086.0 76-77 131932.0 78-79 137866.0 80-81 140321.0 82-83 134515.0 84-85 136090.0 86-87 142550.0 88-89 153888.0 90-91 163231.0 92-93 175356.0 94-95 224698.0 96-97 570747.0 98-99 1292460.0 100-101 9751094.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.04736734010946 #Duplication Level Percentage of deduplicated Percentage of total 1 86.42823333755275 68.31924309190227 2 8.53022949093617 13.485843681309326 3 2.549243622825718 6.045329912788078 4 1.0751563655701917 3.399531207091358 5 0.5399040929623053 2.133899858240998 6 0.2892238042263332 1.3717428177709716 7 0.17018521543293524 0.941688526812803 8 0.11445272496098616 0.7237749274454071 9 0.0751050299764707 0.5343169404276011 >10 0.22263996255342008 2.6201564022487767 >50 0.0042412772756487156 0.2260817932908744 >100 0.0013363155410345666 0.15986069119745666 >500 3.250764063682689E-5 0.021070792113607184 >1k 1.625254537208249E-5 0.017459357360405298 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.299783249657513E-6 0.0 0.0 0.0 3 0.0 6.299783249657513E-6 0.0 1.8899349748972537E-5 0.0 4 0.0 3.1498916248287564E-5 0.0 1.8899349748972537E-5 0.0 5 0.0 3.7798699497945074E-5 0.0 1.8899349748972537E-5 0.0 6 0.0 3.7798699497945074E-5 0.0 2.519913299863005E-5 0.0 7 0.0 3.7798699497945074E-5 0.0 2.519913299863005E-5 0.0 8 0.0 3.7798699497945074E-5 0.0 6.299783249657513E-5 0.0 9 0.0 1.070963152441777E-4 0.0 9.449674874486269E-5 0.0 10-11 1.2599566499315025E-5 1.070963152441777E-4 0.0 1.3544533986763652E-4 0.0 12-13 3.7798699497945074E-5 1.070963152441777E-4 0.0 1.732440393655816E-4 0.0 14-15 4.409848274760259E-5 1.6064447286626659E-4 0.0 2.2049241373801293E-4 0.0 16-17 5.984794087174637E-5 1.6379436449109533E-4 0.0 2.5514122161112926E-4 0.0 18-19 6.929761574623263E-5 1.8269371424006785E-4 0.0 3.1498916248287557E-4 0.0 20-21 7.559739899589015E-5 2.078928472386979E-4 0.0 3.4018829548150564E-4 0.0 22-23 8.189718224554767E-5 2.299420886124992E-4 0.0 4.0318612797808075E-4 0.0 24-25 1.070963152441777E-4 2.7089067973527304E-4 0.0 4.976828767229435E-4 0.0 26-27 1.2599566499315026E-4 2.8349024623458807E-4 0.0 6.677770244636963E-4 0.0 28-29 1.29145556617979E-4 2.8349024623458807E-4 0.0 0.0017355902852806446 0.0 30-31 1.4489501474212278E-4 3.212889457325331E-4 0.0 0.005688704274440733 0.0 32-33 1.574945812414378E-4 3.2758872898219066E-4 0.0 0.014262709277224606 0.0 34-35 1.795438226152391E-4 3.905865614787658E-4 0.0 0.025876359697968233 0.0 36-37 2.015930639890404E-4 4.504345023505121E-4 0.0 0.04348425388076098 0.0 38-39 2.015930639890404E-4 4.7878352697397096E-4 0.0 0.08377136776232078 0.0 40-41 2.3939176348698548E-4 5.29181792971231E-4 0.0 0.12410258012662816 0.0 42-43 2.3939176348698548E-4 5.54380925969861E-4 0.0 0.15194447219848956 0.0 44-45 2.5199132998630046E-4 6.425778914650662E-4 0.0 0.18691456901733838 0.0 46-47 2.645908964856155E-4 7.055757239616413E-4 0.0 0.22180906843719134 0.0 48-49 2.645908964856155E-4 7.055757239616413E-4 0.0 0.2502305405680212 0.0 50-51 2.645908964856155E-4 7.87472906207189E-4 0.0 0.2769164224135704 0.0 52-53 2.6774078811044424E-4 7.969225810816752E-4 0.0 0.34562185853433525 0.0 54-55 2.740405713601018E-4 8.063722559561615E-4 0.0 0.4171117988514487 0.0 56-57 2.771904629849305E-4 8.252716057051341E-4 0.0 0.5058442459228748 0.0 58-59 2.771904629849305E-4 8.252716057051341E-4 0.0 0.5602554738501667 0.0 60-61 2.960898127339031E-4 8.473208470789354E-4 0.0 0.5796651060423614 0.0 62-63 2.960898127339031E-4 8.567705219534216E-4 0.0 0.594463296895807 0.0 64-65 2.960898127339031E-4 9.890659701962295E-4 0.0 0.60167339882504 0.0 66-67 3.023895959835606E-4 9.985156450707158E-4 0.0 0.6081684753554369 0.0 68-69 3.212889457325331E-4 0.001020564886444517 0.0 0.6147202499350808 0.0 70-71 3.212889457325331E-4 0.0010426141278183183 0.0 0.620197911470658 0.0 72-73 3.212889457325331E-4 0.001058363585942462 0.0 0.6241510254598179 0.0 74-75 3.212889457325331E-4 0.0010835627189410921 0.0 0.6273576151338938 0.0 76-77 3.212889457325331E-4 0.001124511310063866 0.0 0.6304634082759748 0.0 78-79 3.212889457325331E-4 0.0011465605514376673 0.0 0.6325517864232363 0.0 80-81 3.212889457325331E-4 0.0011465605514376673 0.0 0.6331439660487042 0.0 82-83 3.2758872898219066E-4 0.0011528603346873246 0.0 0.6337770942652947 0.0 84-85 3.370384038566769E-4 0.0011623100095618111 0.0 0.6340416851617803 0.0 86-87 3.4018829548150564E-4 0.0011843592509356124 0.0 0.6341267322356507 0.0 88 3.4018829548150564E-4 0.00124105730018253 0.0 0.6341298821272755 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19080 0.0 47.230446 1 GTATCAA 33955 0.0 35.066364 1 ATCAACG 40050 0.0 28.988708 3 TCAACGC 40125 0.0 28.934433 4 CAACGCA 41125 0.0 28.148523 5 TATCAAC 42480 0.0 27.720264 2 AACGCAG 43075 0.0 26.929636 6 ACGCAGA 49595 0.0 23.33483 7 CGCAGAG 50140 0.0 23.047432 8 GTACATG 43055 0.0 19.87844 1 GTGGTAT 10080 0.0 19.820116 1 TACATGG 42535 0.0 19.534332 2 GCAGAGT 59240 0.0 19.507122 9 ACATGGG 42575 0.0 18.938513 3 TGGTATC 9640 0.0 18.529348 2 GAGTACT 36085 0.0 18.369606 12-13 AGAGTAC 53220 0.0 17.89334 10-11 CTTATAC 21170 0.0 17.794832 1 CAGAGTA 58005 0.0 17.529743 10-11 CATGGGG 33405 0.0 16.96576 4 >>END_MODULE