##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138941_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16075007 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43207191138393 34.0 31.0 34.0 31.0 34.0 2 32.55874582200804 34.0 31.0 34.0 31.0 34.0 3 32.60827699795092 34.0 31.0 34.0 31.0 34.0 4 36.13886936410043 37.0 35.0 37.0 35.0 37.0 5 36.04775214094774 37.0 35.0 37.0 35.0 37.0 6 36.0669539366297 37.0 35.0 37.0 35.0 37.0 7 36.023476195064795 37.0 35.0 37.0 35.0 37.0 8 36.01783370918594 37.0 35.0 37.0 35.0 37.0 9 37.739020518000395 39.0 38.0 39.0 35.0 39.0 10-11 37.67216633249366 39.0 37.0 39.0 35.0 39.0 12-13 37.65539536001447 39.0 37.0 39.0 35.0 39.0 14-15 39.08137144201555 41.0 38.0 41.0 36.0 41.0 16-17 39.05660358343856 41.0 38.0 41.0 35.0 41.0 18-19 39.056001748552895 41.0 38.5 41.0 35.0 41.0 20-21 39.038091221223716 41.0 39.0 41.0 35.0 41.0 22-23 39.02251227831701 41.0 39.0 41.0 35.0 41.0 24-25 38.982829899187124 41.0 39.0 41.0 35.0 41.0 26-27 38.9245809886025 41.0 38.0 41.0 35.0 41.0 28-29 38.86461372068108 40.0 38.0 41.0 35.0 41.0 30-31 38.78660010629933 40.0 38.0 41.0 34.5 41.0 32-33 38.695868330926686 40.0 38.0 41.0 34.0 41.0 34-35 38.62116931361014 40.0 38.0 41.0 34.0 41.0 36-37 38.59639164940134 40.0 38.0 41.0 34.0 41.0 38-39 38.547091487884 40.0 38.0 41.0 34.0 41.0 40-41 38.51762224138993 40.0 38.0 41.0 34.0 41.0 42-43 38.461595513046454 40.0 38.0 41.0 34.0 41.0 44-45 38.3714295949758 40.0 38.0 41.0 33.0 41.0 46-47 38.319791996213254 40.0 38.0 41.0 33.0 41.0 48-49 38.261134898208134 40.0 38.0 41.0 33.0 41.0 50-51 38.19202197524733 40.0 37.5 41.0 33.0 41.0 52-53 38.05921262905341 40.0 37.0 41.0 33.0 41.0 54-55 37.92724455713111 40.0 37.0 41.0 33.0 41.0 56-57 37.790342022555066 40.0 36.5 41.0 32.5 41.0 58-59 37.66007181232197 40.0 36.0 41.0 32.0 41.0 60-61 37.51036355769155 39.0 36.0 41.0 32.0 41.0 62-63 37.2844395094144 39.0 35.0 41.0 32.0 41.0 64-65 37.06225923680778 39.0 35.0 41.0 32.0 41.0 66-67 36.817541627255444 38.0 35.0 40.5 31.0 41.0 68-69 36.483459673011424 37.0 35.0 40.0 31.0 41.0 70-71 36.15216924539047 37.0 35.0 39.5 31.0 41.0 72-73 35.845429030459435 36.0 35.0 39.0 31.0 41.0 74-75 35.584869788778434 36.0 35.0 39.0 31.0 41.0 76-77 35.3008322507238 35.5 34.0 38.5 31.0 40.0 78-79 35.03729663756113 35.0 34.0 37.0 31.0 39.0 80-81 34.7761265201261 35.0 34.0 37.0 31.0 39.0 82-83 34.49695288976042 35.0 34.0 36.5 30.0 39.0 84-85 34.278110778074804 35.0 34.0 36.0 30.0 37.0 86-87 34.12864209998099 35.0 34.0 36.0 30.0 37.0 88-89 33.999208857341706 35.0 34.0 35.0 30.0 37.0 90-91 33.87607358942414 35.0 34.0 35.0 30.0 36.0 92-93 33.82596020943819 35.0 34.0 35.0 30.5 36.0 94-95 33.77966153237152 35.0 34.0 35.0 31.0 36.0 96-97 33.78800278398106 35.0 34.0 35.0 31.0 36.0 98-99 33.931684377142105 35.0 34.0 35.0 31.0 36.0 100 31.12023324195453 33.0 29.0 35.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 24.0 19 115.0 20 178.0 21 486.0 22 2060.0 23 6808.0 24 18254.0 25 38685.0 26 70878.0 27 112988.0 28 163729.0 29 221852.0 30 285581.0 31 358289.0 32 446907.0 33 561159.0 34 736276.0 35 1022502.0 36 1527541.0 37 2838963.0 38 4439427.0 39 2967805.0 40 254498.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.94169290252875 20.25100206799288 14.569505319655537 24.237799709822834 2 15.034382000257185 20.875337339024608 41.03741560186495 23.052865058853254 3 18.767130266949582 25.318067210397672 29.96668176880809 25.948120753844655 4 13.132591481919729 17.841989120129153 37.57590898716249 31.449510410788623 5 13.531285930997678 37.406014417784775 35.34681615392641 13.715883497291138 6 30.845297931449572 37.31980932297637 18.15316489851984 13.681727847054226 7 27.033288383638027 32.22995797140244 22.635592009384506 18.10116163557503 8 24.48034392768849 37.302739588231596 20.393067324947356 17.82384915913256 9 25.255006109795165 17.11882302757318 21.177266050335156 36.448904812296504 10-11 24.636798701984812 26.80062702315262 28.171030994112627 20.39154328074994 12-13 25.190963422867274 24.20566653100054 28.54965652415917 22.053713521973016 14-15 22.23544046467415 25.523355153853284 26.255099803536623 25.986104577935944 16-17 21.93980037970214 28.744616202513868 26.908068280196005 22.407515137587982 18-19 22.000414560298275 27.839876458045087 28.60274454594108 21.556964435715564 20-21 22.7511396364287 26.905118618368835 28.670869191997557 21.67287255320491 22-23 22.556801949202963 26.825704771824487 28.51782044110125 22.0996728378713 24-25 22.3754743890962 26.924297444799173 28.61302911020074 22.087199055903888 26-27 22.207773470135887 27.044016345418044 28.603416751058298 22.144793433387775 28-29 22.20480679174786 27.04615487194123 28.572397557034616 22.176640779276298 30-31 22.466391176347905 26.795400407997228 28.579648078604624 22.158560337050247 32-33 22.340424300983088 26.93375918729991 28.495739724720387 22.23007678699662 34-35 22.457024934068183 27.018128618267205 28.47266062541448 22.052185822250127 36-37 22.488901857549614 26.936294698452024 28.337297478724153 22.237505965274206 38-39 22.32289727712272 27.08857406100617 28.41618036578967 22.172348296081438 40-41 22.545667445290746 26.9082770248889 28.29724469230161 22.248810837518747 42-43 22.387040933729427 27.08367984699241 28.122373463910698 22.406905755367465 44-45 22.375265246796815 27.12943590686092 28.04177810968905 22.453520736653207 46-47 22.530064225579956 27.133645297720122 27.75713320377707 22.579157272922856 48-49 22.559427092716522 27.32046203692759 27.61880730895992 22.50130356139597 50-51 22.52433302724749 27.355960559981597 27.59219689759468 22.527509515176234 52-53 22.711158452972352 27.310029264583243 27.50748346569954 22.471328816744865 54-55 22.626563231097965 27.27329130252329 27.497937844565985 22.60220762181276 56-57 22.60321010183399 27.43122580767845 27.440740591077905 22.524823499409656 58-59 22.51814703391748 27.37658931814446 27.57847671784173 22.526786930096325 60-61 22.599838083099417 27.351263399541743 27.510094261898534 22.538804255460313 62-63 22.52614516297521 27.464212362981 27.54210726787823 22.46753520616556 64-65 22.577020125796267 27.35675774254529 27.500676042075582 22.565546089582863 66-67 22.589992982787393 27.46365962481426 27.27098085883733 22.67536653356102 68-69 22.527101664669612 27.419336406340978 27.346886022729283 22.706675906260124 70-71 22.524376726808722 27.245966048665142 27.427134754610684 22.802522469915452 72-73 22.609158909161504 27.25090899752502 27.29829446860197 22.841637624711506 74-75 22.44493585980079 27.375550259758164 27.34307383791565 22.836440042525396 76-77 22.593148816791302 27.400755376383113 27.196082921934266 22.810012884891318 78-79 22.466490000895607 27.35761019937255 27.296129314408297 22.879770485323547 80-81 22.503807025295146 27.324264871650588 27.32887349524662 22.84305460780764 82-83 22.602469087364653 27.31253717128448 27.419940071006287 22.66505367034458 84-85 22.635431943973312 27.333003870703998 27.384636131348493 22.646928053974197 86-87 22.5129419156014 27.40419367460028 27.3861888183532 22.696675591445114 88-89 22.5769831072327 27.334282574409237 27.343685434123376 22.745048884234688 90-91 22.545862126798134 27.36926774754192 27.370495900083892 22.714374225576055 92-93 22.627045150937104 27.296686851946756 27.490836426912512 22.585431570203625 94-95 22.35949701228513 27.516162862759526 27.536735829733267 22.58760429522208 96-97 22.48000398894887 27.61065946777139 27.53500279566102 22.374333747618717 98-99 23.555795045940574 29.43523879788117 27.761712633142693 19.24725352303556 100 22.609503897939103 30.505536651570793 21.149412275950773 25.73554717453933 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4867.0 1 3693.0 2 3509.0 3 4555.5 4 5482.5 5 8826.0 6 12280.0 7 15961.5 8 19218.5 9 19259.5 10 16202.0 11 12394.0 12 11970.0 13 16162.5 14 28539.5 15 46664.0 16 61904.0 17 70932.0 18 74217.5 19 72523.5 20 67444.0 21 61804.0 22 59432.5 23 63787.0 24 75626.5 25 95455.5 26 120407.0 27 147389.5 28 177663.5 29 213133.0 30 247813.0 31 281373.5 32 316915.0 33 350553.0 34 381121.5 35 409666.5 36 443248.5 37 477666.0 38 508103.5 39 533817.5 40 557235.5 41 579111.5 42 593288.5 43 607583.0 44 623542.0 45 643219.5 46 662099.5 47 677130.5 48 684261.0 49 679421.0 50 672635.0 51 664559.5 52 640982.5 53 603459.0 54 571114.0 55 541001.5 56 504161.5 57 462654.0 58 421374.0 59 370837.5 60 311670.5 61 261605.5 62 215482.5 63 173404.0 64 138050.0 65 103482.5 66 78298.5 67 60494.0 68 44277.0 69 32641.5 70 25124.5 71 19262.5 72 14439.0 73 10542.5 74 7778.0 75 5799.5 76 4234.0 77 3120.5 78 2424.5 79 1937.5 80 1510.0 81 1111.0 82 854.0 83 581.0 84 359.5 85 255.5 86 193.5 87 152.0 88 102.5 89 68.5 90 48.0 91 33.0 92 25.0 93 16.5 94 9.5 95 8.0 96 8.0 97 7.5 98 4.5 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006494553937052718 3 1.4930009050695902E-4 4 0.0 5 0.010351472941815827 6 0.012217724073152815 7 0.0 8 0.0 9 0.0 10-11 1.5552092761141565E-5 12-13 2.799376697005482E-5 14-15 3.110418552228313E-6 16-17 2.3950222852158013E-4 18-19 8.958005430417542E-4 20-21 0.0 22-23 1.2444459211869376E-4 24-25 0.0 26-27 6.227015308120812E-6 28-29 0.0 30-31 0.0 32-33 0.0 34-35 5.9595092124602666E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 2.246788176180932E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.006110046421401629 52-53 6.35815174284636E-5 54-55 4.044101193117695E-5 56-57 3.395711304910392E-6 58-59 1.3692385096413903E-5 60-61 8.97504719407749E-5 62-63 0.00101956553215701 64-65 0.0015048264942067687 66-67 0.0012561540935195753 68-69 0.00988430224253678 70-71 9.479898523994217E-4 72-73 5.128822564200309E-4 74-75 4.3668670312474656E-4 76-77 1.1110206657991324E-4 78-79 0.0 80-81 1.2088178426348843E-4 82-83 0.0 84-85 3.084133187212243E-5 86-87 1.5581850447580863E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 574.0 20-21 2119.0 22-23 4318.0 24-25 6704.0 26-27 10048.0 28-29 16216.0 30-31 36234.0 32-33 44333.0 34-35 60126.0 36-37 87916.0 38-39 98898.0 40-41 102226.0 42-43 118477.0 44-45 140295.0 46-47 141357.0 48-49 127081.0 50-51 111014.0 52-53 103946.0 54-55 110291.0 56-57 116311.0 58-59 121458.0 60-61 118067.0 62-63 113091.0 64-65 121541.0 66-67 127835.0 68-69 130567.0 70-71 127794.0 72-73 120738.0 74-75 122674.0 76-77 128664.0 78-79 133714.0 80-81 136729.0 82-83 131329.0 84-85 132554.0 86-87 140052.0 88-89 150739.0 90-91 161009.0 92-93 175335.0 94-95 225807.0 96-97 588360.0 98-99 1340058.0 100-101 1.0088408E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.15308517385242 #Duplication Level Percentage of deduplicated Percentage of total 1 87.97820275638317 72.27680784487606 2 8.144597987651728 13.382077043726792 3 2.1276108529889006 5.243693868672299 4 0.8057942073013528 2.647939205800997 5 0.3557165501231493 1.4611606020008014 6 0.1849152816917559 0.9114816532061842 7 0.11883380586458855 0.6833794642308613 8 0.06837351433165169 0.44936761172190404 9 0.04790020120029004 0.35416343781468856 >10 0.16114382424651486 2.06140661479743 >50 0.0050540277969206735 0.27010576465725245 >100 0.0018128636379982728 0.22898641900303537 >500 2.942603681266769E-5 0.01703934876608241 >1k 1.4700745189891791E-5 0.012391120725685928 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.110418552228313E-5 0.0 0.0 0.0 3 0.0 3.110418552228313E-5 0.0 6.220837104456627E-6 0.0 4 0.0 7.465004525347951E-5 0.0 6.220837104456627E-6 0.0 5 0.0 8.709171946239278E-5 0.0 6.220837104456627E-6 0.0 6 4.354585973119639E-5 8.709171946239278E-5 0.0 1.2441674208913253E-5 0.0 7 4.354585973119639E-5 8.709171946239278E-5 0.0 1.2441674208913253E-5 0.0 8 4.354585973119639E-5 8.709171946239278E-5 0.0 1.2441674208913253E-5 6.220837104456627E-6 9 4.354585973119639E-5 1.9906678734261205E-4 0.0 3.110418552228313E-5 6.220837104456627E-6 10-11 5.2877115387881327E-5 1.9906678734261205E-4 0.0 4.9766696835653014E-5 9.33125565668494E-6 12-13 5.909795249233795E-5 2.0528762444706867E-4 0.0 6.220837104456626E-5 1.2441674208913253E-5 14-15 6.220837104456626E-5 3.265939479839729E-4 0.0 6.531878959679458E-5 1.8662511313369878E-5 16-17 8.709171946239278E-5 3.4214604074511446E-4 0.0 8.709171946239276E-5 2.4883348417826507E-5 18-19 8.709171946239278E-5 3.6391897061071265E-4 0.0 1.2441674208913252E-4 2.4883348417826507E-5 20-21 8.709171946239278E-5 3.8880231902853915E-4 0.0 1.5552092761141566E-4 2.4883348417826507E-5 22-23 8.709171946239278E-5 4.3856901586419216E-4 0.0 1.6174176471587227E-4 2.7993766970054816E-5 24-25 8.709171946239278E-5 4.914461312520734E-4 0.0 1.9595636879038373E-4 3.110418552228313E-5 26-27 9.020213801462108E-5 5.101086425654433E-4 0.0 3.1415227377505964E-4 3.110418552228313E-5 28-29 1.0575423077576265E-4 5.101086425654433E-4 0.0 9.580089140863205E-4 3.110418552228313E-5 30-31 1.0575423077576265E-4 6.65629570176859E-4 0.0 0.0031912894345862493 3.110418552228313E-5 32-33 1.1197506788021928E-4 6.780712443857723E-4 0.0 0.008279934186031769 3.7325022626739755E-5 34-35 1.2130632353690421E-4 7.465004525347952E-4 0.0 0.015185063371978625 3.7325022626739755E-5 36-37 1.3063757919358916E-4 8.180400792360463E-4 0.0 0.02596888449255419 3.7325022626739755E-5 38-39 1.3063757919358916E-4 8.584755204150144E-4 0.0 0.04978535934696638 3.7325022626739755E-5 40-41 1.3685841629804577E-4 9.611193326385487E-4 0.0 0.07299841300224628 4.354585973119639E-5 42-43 1.430792534025024E-4 9.953339367130601E-4 0.0 0.08947741049195188 4.66562782834247E-5 44-45 1.430792534025024E-4 0.0011228610973544211 0.0 0.10971690401130152 4.9766696835653014E-5 46-47 1.461896719547307E-4 0.001213063235369042 0.0 0.12984753288132317 4.9766696835653014E-5 48-49 1.4930009050695902E-4 0.0012161736539212705 0.0 0.1453871839682558 5.598753394010964E-5 50-51 1.4930009050695902E-4 0.0013281487218014896 0.0 0.16113523309818775 5.598753394010964E-5 52-53 1.4930009050695902E-4 0.0013405903960104029 0.0 0.2023140643111384 6.531878959679458E-5 54-55 1.5552092761141566E-4 0.0013779154186371427 0.0 0.24758309592026928 7.465004525347951E-5 56-57 1.648521832681006E-4 0.0014245716969205674 0.0 0.2980371952559647 7.465004525347951E-5 58-59 1.7729385747701384E-4 0.0014525654638906224 0.0 0.3324726390476844 7.465004525347951E-5 60-61 1.8973553168592712E-4 0.0014992217421740468 0.0 0.34399985020224255 7.465004525347951E-5 62-63 1.9906678734261205E-4 0.0015272155091441016 0.0 0.35691119761254225 7.465004525347951E-5 64-65 1.9906678734261205E-4 0.0017325031335911705 0.0 0.36335287443420705 7.465004525347951E-5 66-67 2.0528762444706867E-4 0.0017511656449045402 0.0 0.3689049715499346 7.465004525347951E-5 68-69 2.1461888010375363E-4 0.0017853802489790518 0.0 0.3744321853172443 7.776046380570783E-5 70-71 2.2706055431266685E-4 0.0018009323417401933 0.0 0.37889874635824417 8.087088235793614E-5 72-73 2.4261264707380842E-4 0.0018102635973968784 0.0 0.38233886927700866 8.709171946239278E-5 74-75 2.4261264707380842E-4 0.001866251131336988 0.0 0.38502627090613395 8.709171946239278E-5 76-77 2.5194390273049335E-4 0.0019533428507993804 0.0 0.3878069850918261 8.709171946239278E-5 78-79 2.550543212827217E-4 0.0019720053621127506 0.0 0.38957059241093955 8.709171946239278E-5 80-81 2.7371683259609154E-4 0.0019720053621127506 0.0 0.39012113649468394 9.33125565668494E-5 82-83 2.7371683259609154E-4 0.0019720053621127506 0.0 0.3907463306236818 1.1197506788021928E-4 84-85 2.7371683259609154E-4 0.001978226199217207 0.0 0.39095472866668113 1.1197506788021928E-4 86-87 2.7371683259609154E-4 0.002015551221843947 0.0 0.39099827452641234 1.1197506788021928E-4 88 2.7371683259609154E-4 0.002108863778410796 0.0 0.3910044953635168 1.1197506788021928E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19060 0.0 51.0996 1 GTATCAA 34780 0.0 36.749874 1 TCAACGC 41950 0.0 29.755787 4 ATCAACG 42475 0.0 29.438152 3 CAACGCA 43350 0.0 28.765333 5 TATCAAC 44640 0.0 28.20314 2 AACGCAG 44505 0.0 28.053524 6 ACGCAGA 51215 0.0 24.383793 7 CGCAGAG 55290 0.0 22.609762 8 GTGGTAT 9635 0.0 21.313732 1 GCAGAGT 61990 0.0 20.21415 9 GTACATG 44190 0.0 20.15053 1 TGGTATC 9285 0.0 19.731073 2 TACATGG 44340 0.0 19.678793 2 GAGTACT 37010 0.0 19.553461 12-13 ACATGGG 44790 0.0 18.78546 3 AGAGTAC 55080 0.0 18.473934 10-11 CAGAGTA 59855 0.0 18.380663 10-11 CATGGGG 35540 0.0 16.973898 4 GTACTTT 42550 0.0 16.95874 14-15 >>END_MODULE