##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138940_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15501631 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.44115480493633 34.0 31.0 34.0 31.0 34.0 2 32.5707555546897 34.0 31.0 34.0 31.0 34.0 3 32.62039175103575 34.0 31.0 34.0 31.0 34.0 4 36.147755613586725 37.0 35.0 37.0 35.0 37.0 5 36.05904772213969 37.0 35.0 37.0 35.0 37.0 6 36.074363078310924 37.0 35.0 37.0 35.0 37.0 7 36.03224512310995 37.0 35.0 37.0 35.0 37.0 8 36.02727996815303 37.0 35.0 37.0 35.0 37.0 9 37.751545434154636 39.0 38.0 39.0 35.0 39.0 10-11 37.68637935582392 39.0 38.0 39.0 35.0 39.0 12-13 37.67052660458761 39.0 37.0 39.0 35.0 39.0 14-15 39.10007608231676 41.0 38.0 41.0 36.0 41.0 16-17 39.076444407688456 41.0 38.0 41.0 36.0 41.0 18-19 39.07867120562992 41.0 38.5 41.0 35.0 41.0 20-21 39.06175905095226 41.0 39.0 41.0 35.0 41.0 22-23 39.04688061649754 41.0 39.0 41.0 35.0 41.0 24-25 39.00914107617287 41.0 39.0 41.0 35.0 41.0 26-27 38.955013357902764 41.0 38.0 41.0 35.0 41.0 28-29 38.8980999090229 40.5 38.0 41.0 35.0 41.0 30-31 38.81964598555041 40.0 38.0 41.0 35.0 41.0 32-33 38.732044130172156 40.0 38.0 41.0 34.0 41.0 34-35 38.65604127778074 40.0 38.0 41.0 34.0 41.0 36-37 38.63616015540639 40.0 38.0 41.0 34.0 41.0 38-39 38.58270963811974 40.0 38.0 41.0 34.0 41.0 40-41 38.57784154943178 40.0 38.0 41.0 34.0 41.0 42-43 38.53567457307142 40.0 38.0 41.0 34.0 41.0 44-45 38.455527957503904 40.0 38.0 41.0 33.5 41.0 46-47 38.41143518790177 40.0 38.0 41.0 33.0 41.0 48-49 38.3652991037568 40.0 38.0 41.0 33.0 41.0 50-51 38.30902581330617 40.0 38.0 41.0 33.0 41.0 52-53 38.192192204828345 40.0 37.5 41.0 33.0 41.0 54-55 38.07242910057971 40.0 37.0 41.0 33.0 41.0 56-57 37.96209427839163 40.0 37.0 41.0 33.0 41.0 58-59 37.85234028123218 40.0 36.5 41.0 33.0 41.0 60-61 37.713398958153405 39.5 36.0 41.0 32.5 41.0 62-63 37.50967146304856 39.0 36.0 41.0 32.0 41.0 64-65 37.308106137896075 39.0 35.0 41.0 32.0 41.0 66-67 37.0824990857756 39.0 35.0 41.0 32.0 41.0 68-69 36.76224819105727 38.0 35.0 40.5 31.5 41.0 70-71 36.442335144157404 37.0 35.0 40.0 31.0 41.0 72-73 36.13864146154411 37.0 35.0 39.5 31.0 41.0 74-75 35.87288992464909 36.0 35.0 39.0 31.0 41.0 76-77 35.57616658943652 36.0 35.0 39.0 31.0 40.5 78-79 35.29518087017182 35.5 34.5 37.5 31.0 39.5 80-81 35.01003769727524 35.0 34.0 37.0 31.0 39.0 82-83 34.70435438584373 35.0 34.0 37.0 31.0 39.0 84-85 34.461864775989845 35.0 34.0 36.0 31.0 38.0 86-87 34.28850675680705 35.0 34.0 36.0 31.0 37.0 88-89 34.13567285222953 35.0 34.0 36.0 31.0 37.0 90-91 33.9922991443179 35.0 34.0 35.0 31.0 36.5 92-93 33.929724821173394 35.0 34.0 35.0 31.0 36.0 94-95 33.870012471019045 35.0 34.0 35.0 31.0 36.0 96-97 33.8600128427524 35.0 34.0 35.0 31.0 36.0 98-99 33.99261524821739 35.0 34.0 35.0 31.0 36.0 100 31.241959794854594 33.0 29.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 21.0 19 108.0 20 142.0 21 488.0 22 1833.0 23 6009.0 24 16234.0 25 34085.0 26 62443.0 27 101229.0 28 148049.0 29 201491.0 30 263139.0 31 332046.0 32 415249.0 33 523921.0 34 689150.0 35 945768.0 36 1387421.0 37 2579183.0 38 4295576.0 39 3204779.0 40 293266.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.27880679136279 20.775988023453788 14.710419826146035 24.23478535903738 2 14.574107907802517 21.063227066753374 41.8093962571868 22.55326876825731 3 18.27085237571882 26.02753405567153 30.44240005372348 25.25921351488617 4 12.58552729064445 18.387039402499 38.594906561767594 30.43252674508895 5 12.968333680321841 37.84686135829517 35.963646012882684 13.221158948500303 6 29.745772619129653 38.33238879697294 18.658709334935434 13.263129248961977 7 26.100705145155374 32.702184692694594 23.26779033767479 17.929319824475243 8 23.699080438697067 37.78180502425841 21.112533255371645 17.406581281672878 9 24.889387445746838 17.346432772138623 21.585947956057012 36.17823182605753 10-11 23.92788252611847 27.146929020245587 28.99208724866223 19.93310120497371 12-13 24.6919017349725 24.49225497526744 29.24035273970239 21.575490550057673 14-15 21.743494071268636 25.982622472604493 26.803732897766235 25.470150558360636 16-17 21.414263219820466 29.16046165841945 27.56077102021334 21.86450410154674 18-19 21.419432442099335 28.266257338127843 29.267003427962013 21.04730679181081 20-21 22.11520832104897 27.364139049379453 29.278002763481325 21.242649866090247 22-23 21.84238669838143 27.414486437937963 29.093909661959028 21.64921720172158 24-25 21.733452195489566 27.509221056827244 29.190970408653953 21.566356339029237 26-27 21.724846021083295 27.65696881268766 29.09065323295194 21.527531933277107 28-29 21.573593926538752 27.65409774558268 29.193186952533008 21.57912137534556 30-31 21.92830659768476 27.53106400189369 29.04092610612608 21.49970329429547 32-33 21.71400292960518 27.530086217496212 29.052390490819302 21.7035203620793 34-35 21.698506024516632 27.712753733279282 29.13129362442023 21.457446617783855 36-37 21.83183351520293 27.582064808551536 28.95980014555015 21.626301530695375 38-39 21.664006947836942 27.610440835648458 29.081280152115518 21.64427206439908 40-41 21.89972748508559 27.52063043950215 28.924239449095612 21.655402626316643 42-43 21.88534536264082 27.588362422004884 28.766441270681714 21.759850944672582 44-45 21.88219693362729 27.80070193652105 28.50930548071055 21.807795649141106 46-47 21.9770840928645 27.70025448135011 28.194512408712548 22.128149017072843 48-49 22.01604150728245 27.77853897880316 28.171472131220632 22.03394738269376 50-51 21.88341892731314 27.90983319968045 28.18749991770143 22.01924795530498 52-53 21.949315738402696 27.897066959302318 28.188454502114624 21.96516280018036 54-55 22.00079123907645 27.864752341324035 28.091888517822454 22.042567901777062 56-57 22.090482864758613 27.995336549147936 27.917718907868366 21.99646167822509 58-59 21.91678590386153 28.11615383774772 28.16723220359114 21.799828054799605 60-61 22.099653151557654 28.18791951161125 27.893633722752465 21.818793614078636 62-63 21.935289243220144 28.345753153726537 27.833397725738536 21.88555987731478 64-65 21.912948499767815 28.27723908577944 27.862999151578038 21.94681326287471 66-67 21.989197931014676 28.19501699217935 27.820772550533015 21.995012526272962 68-69 21.983338627555842 28.08039475204532 27.918523679964885 22.017742940433955 70-71 21.959529196280418 27.855473293137003 27.979424507990146 22.205573002592438 72-73 22.043570423566145 27.887029110812232 27.94216569134224 22.12723477427938 74-75 21.93014713769935 27.96351916208078 27.97034585714897 22.135987843070904 76-77 22.001273656562777 27.944222459518397 27.8788107741136 22.175693109805227 78-79 21.950715905428936 27.911499523518103 27.909268385943438 22.228516185109523 80-81 21.93367630151374 27.98575979417448 27.931006930104978 22.149556974206806 82-83 21.983136330494304 27.95978226226566 28.009622328865063 22.047459078374974 84-85 22.145570183983057 27.923497178861368 27.911230828234896 22.01970180892068 86-87 21.930762809302053 27.96662826719733 27.998121505030632 22.104487418469983 88-89 22.00881505776934 27.940936268680872 27.95168542633779 22.098563247211995 90-91 22.039854077976404 28.011410121044644 27.93841795199788 22.010317848981074 92-93 22.045526029123973 27.95874476134857 27.983746591687343 22.01198261784011 94-95 21.903926828782367 28.04957888782729 28.041232871609946 22.0052614117804 96-97 21.94940933758385 28.1989917747482 28.09411460098083 21.75748428668712 98-99 22.952313952473556 30.045565906865214 28.323608588377848 18.678511552283382 100 22.02545106311703 31.100623834104805 21.748692080183343 25.125233022594823 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2931.0 1 2350.5 2 2883.0 3 4045.0 4 5248.5 5 9226.5 6 12842.5 7 15507.0 8 17180.0 9 16229.5 10 13435.0 11 10542.5 12 11102.0 13 16068.5 14 29401.5 15 48984.0 16 65467.0 17 75339.0 18 78628.0 19 76269.0 20 71073.0 21 65911.5 22 64347.5 23 70245.5 24 84418.0 25 106189.5 26 135016.0 27 168022.0 28 202490.5 29 240446.5 30 278064.5 31 314261.0 32 351989.0 33 389442.0 34 426345.0 35 461418.5 36 496898.0 37 529259.5 38 550633.0 39 566421.5 40 585749.0 41 605311.5 42 622273.0 43 637784.5 44 653877.5 45 671993.5 46 676132.5 47 668664.5 48 659304.5 49 643209.0 50 623756.5 51 599815.0 52 570347.0 53 536526.0 54 499130.0 55 458342.0 56 417439.0 57 377024.0 58 335788.0 59 292158.5 60 243490.0 61 196360.0 62 156288.0 63 122897.5 64 94602.0 65 72041.5 66 54947.5 67 43102.5 68 34052.0 69 26022.5 70 20061.5 71 15451.0 72 11843.5 73 9001.0 74 6737.5 75 5037.0 76 3793.0 77 2811.0 78 2066.0 79 1567.5 80 1179.0 81 867.0 82 663.0 83 448.0 84 299.5 85 236.5 86 184.0 87 137.0 88 94.5 89 59.0 90 35.5 91 25.5 92 22.0 93 16.5 94 9.0 95 6.5 96 6.0 97 4.5 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0063928756915965805 3 1.8062615475752196E-4 4 0.0 5 0.010308592689375718 6 0.012663183635321987 7 0.0 8 0.0 9 0.0 10-11 4.193107164013903E-5 12-13 1.2901868196965855E-5 14-15 6.4509340984829275E-6 16-17 2.580373639393171E-4 18-19 9.450618454277488E-4 20-21 0.0 22-23 1.4194842407246543E-4 24-25 0.0 26-27 1.291322397425258E-5 28-29 0.0 30-31 0.0 32-33 0.0 34-35 4.2299097831826336E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.3376163851865636E-5 44-45 0.0 46-47 6.803040414822193E-6 48-49 0.0 50-51 0.0059390052381056 52-53 4.1914185943553813E-5 54-55 7.04199465343598E-5 56-57 7.1026387048565606E-6 58-59 1.7914687392287942E-5 60-61 1.0122096341100764E-4 62-63 0.0010065390759256495 64-65 0.0013429457341751873 66-67 0.0010365848312046066 68-69 0.009199914134134748 70-71 8.382700548808957E-4 72-73 5.74535572255049E-4 74-75 4.0202346139339706E-4 76-77 8.585739773096069E-5 78-79 0.0 80-81 1.473776360332425E-4 82-83 0.0 84-85 0.0 86-87 2.219855198845379E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 523.0 20-21 1797.0 22-23 3431.0 24-25 5954.0 26-27 9166.0 28-29 16165.0 30-31 37894.0 32-33 46056.0 34-35 62408.0 36-37 92722.0 38-39 106805.0 40-41 108806.0 42-43 124661.0 44-45 148195.0 46-47 146719.0 48-49 130376.0 50-51 116856.0 52-53 113169.0 54-55 119735.0 56-57 124020.0 58-59 124066.0 60-61 121817.0 62-63 119326.0 64-65 128996.0 66-67 136786.0 68-69 139326.0 70-71 131785.0 72-73 119830.0 74-75 121019.0 76-77 126509.0 78-79 130710.0 80-81 132204.0 82-83 128112.0 84-85 129354.0 86-87 136360.0 88-89 146187.0 90-91 154483.0 92-93 165755.0 94-95 211910.0 96-97 548068.0 98-99 1245444.0 100-101 9588126.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.63342242190285 #Duplication Level Percentage of deduplicated Percentage of total 1 86.71164215988804 69.05144829015245 2 8.394970708572428 13.370404973104986 3 2.470506983529586 5.902047786470174 4 1.0754450502533102 3.425654799134655 5 0.5029044862396024 2.002400269529414 6 0.2858609245807334 1.3658450256631953 7 0.16357217566990845 0.9118068513114064 8 0.1080563932111809 0.6883920324778563 9 0.06739275692036054 0.48300442920141173 >10 0.21600979503284753 2.513256187490329 >50 0.0028253429630707284 0.1455904407116614 >100 7.504525212791368E-4 0.09859980410080534 >500 4.708136573443879E-5 0.024245075471546404 >1k 1.5689251870305833E-5 0.017304035180152954 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2901868196965855E-5 2 0.0 6.4509340984829275E-6 0.0 0.0 1.2901868196965855E-5 3 0.0 1.2901868196965855E-5 0.0 0.0 1.2901868196965855E-5 4 0.0 2.580373639393171E-5 0.0 0.0 1.2901868196965855E-5 5 0.0 2.580373639393171E-5 0.0 0.0 1.2901868196965855E-5 6 2.580373639393171E-4 2.580373639393171E-5 0.0 0.0 1.9352802295448783E-5 7 2.580373639393171E-4 2.580373639393171E-5 0.0 0.0 1.9352802295448783E-5 8 2.644882980378E-4 2.580373639393171E-5 0.0 6.4509340984829275E-6 1.9352802295448783E-5 9 2.644882980378E-4 5.8058406886346344E-5 0.0 6.4509340984829275E-6 2.580373639393171E-5 10-11 2.838411003332488E-4 6.450934098482927E-5 0.0 1.2901868196965855E-5 2.580373639393171E-5 12-13 3.031939026286976E-4 6.773480803407074E-5 0.0 1.2901868196965855E-5 2.580373639393171E-5 14-15 3.096448367271805E-4 9.031307737876099E-5 0.0 1.2901868196965855E-5 4.193107164013903E-5 16-17 4.93496458533944E-4 9.676401147724392E-5 0.0 1.2901868196965855E-5 5.8058406886346344E-5 18-19 4.967219255831854E-4 1.0644041262496831E-4 0.0 1.9352802295448783E-5 6.450934098482927E-5 20-21 4.999473926324269E-4 1.1934228082193416E-4 0.0 1.9352802295448783E-5 7.09602750833122E-5 22-23 5.128492608293927E-4 1.2901868196965854E-4 0.0 1.9352802295448783E-5 8.063667623103659E-5 24-25 5.35427530174083E-4 1.2901868196965854E-4 0.0 2.580373639393171E-5 8.708761032951952E-5 26-27 5.612312665680147E-4 1.3869508311738294E-4 0.0 6.450934098482927E-5 9.353854442800245E-5 28-29 5.612312665680147E-4 1.419205501666244E-4 0.0 2.3223362754538538E-4 9.676401147724392E-5 30-31 5.612312665680147E-4 1.419205501666244E-4 0.0 9.289345101815415E-4 9.676401147724392E-5 32-33 5.709076677157391E-4 1.515969513143488E-4 0.0 0.0026255301780825514 9.676401147724392E-5 34-35 6.289660746020854E-4 1.935280229544878E-4 0.0 0.004670476287301639 1.0321494557572684E-4 36-37 6.741226132914659E-4 2.2578269344690244E-4 0.0 0.007728219049982547 1.0321494557572684E-4 38-39 6.837990144391903E-4 2.483609627915927E-4 0.0 0.012640605365977296 1.0321494557572684E-4 40-41 6.967008826361562E-4 2.8061563328400733E-4 0.0 0.01772394143558184 1.0321494557572684E-4 42-43 7.031518167346391E-4 3.193212378749049E-4 0.0 0.022278300909110788 1.0321494557572684E-4 44-45 7.192791519808465E-4 3.54801375416561E-4 0.0 0.027339058709370645 1.1289134672345123E-4 46-47 7.289555531285708E-4 3.8383057885973417E-4 0.0 0.033228761541285554 1.257932149204171E-4 48-49 7.354064872270537E-4 3.8705604590897567E-4 0.0 0.0386539971181097 1.2901868196965854E-4 50-51 7.934648941134001E-4 4.2253618345063174E-4 0.0 0.043714754918369556 1.2901868196965854E-4 52-53 7.99915828211883E-4 4.257616504998732E-4 0.0 0.048994844477977834 1.3869508311738292E-4 54-55 7.99915828211883E-4 4.289871175491147E-4 0.0 0.05423945390004445 1.6127335246207317E-4 56-57 7.99915828211883E-4 4.3866351869683906E-4 0.0 0.05957760186653908 1.7094975360979758E-4 58-59 8.031412952611244E-4 4.4188898574608055E-4 0.0 0.06527700214254874 1.8062615475752196E-4 60-61 8.35395965753539E-4 4.547908539430464E-4 0.0 0.07084738373658875 1.8062615475752196E-4 62-63 0.0010192475875603025 4.6446725509077076E-4 0.0 0.07584363219586378 1.9997895705297074E-4 64-65 0.0010192475875603025 5.031728596816684E-4 0.0 0.0806753818356275 1.9997895705297074E-4 66-67 0.0010515022580527172 5.096237937801513E-4 0.0 0.08579742350982295 1.9997895705297074E-4 68-69 0.0010579531921512 5.257511290263586E-4 0.0 0.0909839745250032 1.9997895705297074E-4 70-71 0.0010934333296928563 5.386529972233245E-4 0.0 0.09558349053722154 2.0642989115145368E-4 72-73 0.001203099209367066 5.418784642725659E-4 0.0 0.09905086761515611 2.1933175934841953E-4 74-75 0.0012063246764163075 5.515548654202902E-4 0.0 0.10193443515717798 2.1933175934841953E-4 76-77 0.0012418048139579635 5.870350029619463E-4 0.0 0.10454706346706356 2.1933175934841953E-4 78-79 0.0012643830833026538 5.934859370604293E-4 0.0 0.10628881567365395 2.1933175934841953E-4 80-81 0.0012708340174011367 5.999368711589123E-4 0.0 0.10682424320382804 2.1933175934841953E-4 82-83 0.0012837358855981025 6.031623382081537E-4 0.0 0.10759835529564599 2.3223362754538538E-4 84-85 0.0013063141549427928 6.063878052573952E-4 0.0 0.1078402653243391 2.3223362754538538E-4 86-87 0.0013192160231397586 6.063878052573952E-4 0.0 0.10791445106647166 2.3223362754538538E-4 88 0.0013546961606814149 6.257406075528439E-4 0.0 0.10792412746761937 2.3223362754538538E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18960 0.0 47.061108 1 GTATCAA 32900 0.0 35.749733 1 ATCAACG 39000 0.0 29.516539 3 TCAACGC 39125 0.0 29.400608 4 CAACGCA 39915 0.0 28.765715 5 TATCAAC 41655 0.0 27.87025 2 AACGCAG 41385 0.0 27.843216 6 CTTATAC 11035 0.0 26.262867 1 ACGCAGA 47530 0.0 24.169292 7 CGCAGAG 48150 0.0 23.849297 8 TATACAC 17180 0.0 20.561974 3 GTGGTAT 9625 0.0 20.527687 1 GCAGAGT 57525 0.0 19.977282 9 TGGTATC 9735 0.0 18.687723 2 GTACATG 39585 0.0 18.351162 1 GAGTACT 36895 0.0 18.16496 12-13 TACATGG 38735 0.0 18.032976 2 TTATACA 18075 0.0 17.953161 2 CAGAGTA 56540 0.0 17.811739 10-11 AGAGTAC 52165 0.0 17.688 10-11 >>END_MODULE