##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138939_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 37059544 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.442667643185246 34.0 31.0 34.0 31.0 34.0 2 32.57320824023091 34.0 31.0 34.0 31.0 34.0 3 32.622906423241474 34.0 31.0 34.0 31.0 34.0 4 36.14881872264807 37.0 35.0 37.0 35.0 37.0 5 36.05881683271656 37.0 35.0 37.0 35.0 37.0 6 36.075070972271 37.0 35.0 37.0 35.0 37.0 7 36.028772804112215 37.0 35.0 37.0 35.0 37.0 8 36.023860169461344 37.0 35.0 37.0 35.0 37.0 9 37.74929146456848 39.0 38.0 39.0 35.0 39.0 10-11 37.68108189620466 39.0 37.0 39.0 35.0 39.0 12-13 37.66216146642279 39.0 37.0 39.0 35.0 39.0 14-15 39.089494220436166 41.0 38.0 41.0 36.0 41.0 16-17 39.066011443637834 41.0 38.0 41.0 35.0 41.0 18-19 39.066960821212476 41.0 38.5 41.0 35.0 41.0 20-21 39.051376311258736 41.0 39.0 41.0 35.0 41.0 22-23 39.03581503583227 41.0 39.0 41.0 35.0 41.0 24-25 38.99334018049623 41.0 39.0 41.0 35.0 41.0 26-27 38.93041017177716 41.0 38.0 41.0 35.0 41.0 28-29 38.871950126871766 40.0 38.0 41.0 35.0 41.0 30-31 38.786756983199986 40.0 38.0 41.0 34.5 41.0 32-33 38.69428658046019 40.0 38.0 41.0 34.0 41.0 34-35 38.624209622650014 40.0 38.0 41.0 34.0 41.0 36-37 38.60310760839645 40.0 38.0 41.0 34.0 41.0 38-39 38.54138083182022 40.0 38.0 41.0 34.0 41.0 40-41 38.544440432379375 40.0 38.0 41.0 34.0 41.0 42-43 38.50420706352192 40.0 38.0 41.0 34.0 41.0 44-45 38.42371691621849 40.0 38.0 41.0 33.5 41.0 46-47 38.38113156406557 40.0 38.0 41.0 33.0 41.0 48-49 38.328076962832526 40.0 38.0 41.0 33.0 41.0 50-51 38.25896741328632 40.0 38.0 41.0 33.0 41.0 52-53 38.14517048921567 40.0 37.0 41.0 33.0 41.0 54-55 38.020587894313515 40.0 37.0 41.0 33.0 41.0 56-57 37.90447895255943 40.0 37.0 41.0 33.0 41.0 58-59 37.79995559746288 40.0 36.5 41.0 33.0 41.0 60-61 37.65774331699107 39.5 36.0 41.0 32.0 41.0 62-63 37.459081048880066 39.0 36.0 41.0 32.0 41.0 64-65 37.25750513173472 39.0 35.0 41.0 32.0 41.0 66-67 37.029828204050844 39.0 35.0 41.0 32.0 41.0 68-69 36.71038497404427 38.0 35.0 40.0 31.0 41.0 70-71 36.390560408666886 37.0 35.0 40.0 31.0 41.0 72-73 36.08805390110206 37.0 35.0 39.0 31.0 41.0 74-75 35.82220926232489 36.0 35.0 39.0 31.0 41.0 76-77 35.52593401154273 36.0 35.0 39.0 31.0 40.5 78-79 35.245676819065814 35.5 34.0 37.5 31.0 39.5 80-81 34.96172246791712 35.0 34.0 37.0 31.0 39.0 82-83 34.65918904617102 35.0 34.0 37.0 31.0 39.0 84-85 34.42188615389178 35.0 34.0 36.0 31.0 37.5 86-87 34.25299026913868 35.0 34.0 36.0 31.0 37.0 88-89 34.10715546687262 35.0 34.0 36.0 31.0 37.0 90-91 33.968856035104935 35.0 34.0 35.0 31.0 36.0 92-93 33.90977845359336 35.0 34.0 35.0 31.0 36.0 94-95 33.854393040238804 35.0 34.0 35.0 31.0 36.0 96-97 33.85093569569642 35.0 34.0 35.0 31.0 36.0 98-99 33.98568562112416 35.0 34.0 35.0 31.0 36.0 100 31.216565279115798 33.0 29.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 6.0 18 75.0 19 205.0 20 373.0 21 1289.0 22 4913.0 23 15943.0 24 40936.0 25 86057.0 26 154385.0 27 247804.0 28 361930.0 29 491321.0 30 638123.0 31 802149.0 32 1002322.0 33 1263195.0 34 1653758.0 35 2274182.0 36 3326927.0 37 6143974.0 38 1.033514E7 39 7516501.0 40 698036.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.1092738755771 20.71605899953869 14.681044105669514 24.4936230192147 2 14.536852302317325 20.920922611894895 41.913356405089196 22.628868680698584 3 18.192621949217127 25.823979154797787 30.654273106979453 25.32912578900563 4 12.552609929577116 18.544529312071408 38.15177272553596 30.751088032815517 5 12.949031342453482 37.82366857201796 35.942895755251605 13.28440433027695 6 29.773114146904213 38.168677916402075 18.533047212084107 13.525160724609611 7 26.153333133294893 32.63921973783596 22.863937559512333 18.343509569356815 8 23.79392201911605 37.7030893850178 21.04013746094663 17.462851134919525 9 24.816203890690076 17.208298623426128 21.276365408057906 36.699132077825894 10-11 23.938042330166752 27.05429491708583 28.922692971157105 20.08496978159031 12-13 24.717750063209113 24.319702651382787 29.044452263695735 21.918095021712364 14-15 21.76263925564106 25.857105889603595 26.520750122640486 25.859504732114864 16-17 21.53529479819088 29.19409314152897 27.22136215548188 22.04924990479827 18-19 21.62751511172788 28.131733016945976 28.931306110962122 21.309445760364017 20-21 22.22525804751072 27.211127495122877 28.94067494113906 21.622939516227344 22-23 21.909073209248227 27.481286943146486 28.770959212034995 21.83868063557029 24-25 22.037120097297983 27.476158496831253 28.871149592800776 21.615571813069987 26-27 21.962836659706532 27.59738451609502 28.814088014426144 21.6256908097723 28-29 21.70322432673894 27.487486160731557 28.899557428550104 21.909732083979396 30-31 21.978388885056493 27.367285729720347 29.01756609398215 21.63675929124101 32-33 21.51081344365229 27.249086273395704 29.238439793383613 22.00166048956839 34-35 21.66302884140349 27.42498973525398 28.950043940411856 21.961937482930672 36-37 21.743660925436252 27.53288635411289 29.046306950908363 21.67714576954249 38-39 21.680173931898807 27.455554418259542 29.019843550009345 21.844428099832303 40-41 21.88670363062399 27.339994772566246 28.954166863382376 21.819134733427383 42-43 22.042738891799736 27.32354421999263 28.759513101912386 21.874203786295247 44-45 21.820098867655833 27.665318934923498 28.569405691621718 21.945176505798948 46-47 22.14217871280857 27.407001851175693 28.118466403069164 22.33235303294657 48-49 22.105625348820674 27.51059988455138 28.13017540976598 22.253599356861972 50-51 21.88248855854776 27.60207859172894 28.30153370127464 22.213899148448665 52-53 22.019555900538084 27.617784899459668 28.43761858937223 21.925040610630017 54-55 22.01111365599095 27.622736316202218 28.147345891465285 22.218804136341543 56-57 22.220278710431376 27.895009248696056 27.786870097800232 22.097841943072332 58-59 21.810775209586563 28.168122513224215 28.251447407503893 21.769654869685326 60-61 22.16519156002287 28.43756175377286 27.662276846562577 21.73496983964169 62-63 21.8875958333334 28.687652513024037 27.648959872556983 21.77579178108558 64-65 21.871242818954677 28.528887753119886 27.713240371922577 21.886629056002864 66-67 21.953231933376234 28.37882931080447 27.665386104242266 22.002552651577027 68-69 21.969021469510345 28.20997132767032 27.75904105655624 22.061966146263092 70-71 22.024862034784874 27.875752770541514 27.87333244807962 22.22605274659399 72-73 22.132175856123503 27.787235928824632 27.885515270668225 22.19507294438364 74-75 22.008523527698806 27.884856883876736 27.877343769898754 22.229275818525704 76-77 22.077548055512146 27.857295776877862 27.797770266404175 22.26738590120582 78-79 22.009864041754 27.82735861655448 27.848448542097547 22.314328799593966 80-81 22.04270913318897 27.89542746215673 27.83371306474507 22.228150339909224 82-83 22.097506125592503 27.852881637597687 27.91398051042841 22.135631726381398 84-85 22.17191601367756 27.831788377754773 27.86784779944615 22.128447809121514 86-87 22.025735689002214 27.901997514817932 27.88864448576675 22.1836223104131 88-89 22.094589932522418 27.81168997497864 27.899569879972596 22.194150212526345 90-91 22.081138783602093 27.900712258062388 27.90074274694936 22.11740621138616 92-93 22.123740751045055 27.833877721835705 27.935250502250597 22.107131024868647 94-95 21.98695745308678 27.98369160973818 27.92370654350683 22.105644393668204 96-97 22.020936475521825 28.101787047410156 28.001193376687628 21.8760831003804 98-99 23.05757085283885 29.89709418904905 28.30553381815724 18.73980113995486 100 22.097933601105787 30.96652071968823 21.712605951178908 25.22293972802708 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 8455.0 1 6651.5 2 7366.0 3 10174.0 4 12961.5 5 21389.5 6 29211.0 7 35943.5 8 40975.5 9 40044.0 10 34092.0 11 27109.0 12 27862.5 13 39000.5 14 69569.0 15 114221.5 16 152144.0 17 175239.0 18 183176.0 19 178872.0 20 166944.0 21 153966.0 22 151297.0 23 166674.5 24 199504.0 25 249198.0 26 311678.5 27 383844.5 28 466288.5 29 556956.0 30 643306.0 31 725466.0 32 811914.0 33 895879.5 34 979651.0 35 1061806.0 36 1145017.5 37 1226271.5 38 1291593.0 39 1346543.0 40 1401502.5 41 1449791.0 42 1483073.0 43 1517339.5 44 1558880.0 45 1609607.5 46 1677897.0 47 1710156.5 48 1686169.0 49 1632275.5 50 1564545.0 51 1493631.0 52 1411815.0 53 1320504.0 54 1221064.0 55 1120440.0 56 1021955.0 57 920480.0 58 814814.5 59 702634.5 60 586302.5 61 482461.5 62 388634.5 63 305522.0 64 235890.0 65 177363.0 66 135117.5 67 104984.5 68 80142.0 69 60529.0 70 46734.5 71 36203.0 72 27926.5 73 21161.0 74 15926.5 75 11996.5 76 8849.5 77 6523.0 78 4841.0 79 3528.5 80 2556.5 81 1841.0 82 1420.5 83 1021.5 84 716.5 85 534.0 86 419.0 87 345.0 88 240.5 89 147.0 90 100.5 91 76.5 92 60.5 93 41.5 94 25.0 95 18.0 96 17.0 97 15.5 98 7.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0064814612937493235 3 2.1856717934791642E-4 4 0.0 5 0.011022801575756032 6 0.01184849980884816 7 0.0 8 0.0 9 0.0 10-11 4.317376382181065E-5 12-13 3.777704334408432E-5 14-15 1.0793440955452663E-5 16-17 2.19916359467348E-4 18-19 8.918080589442762E-4 20-21 0.0 22-23 1.2954678166390534E-4 24-25 0.0 26-27 1.2153583538797541E-5 28-29 0.0 30-31 0.0 32-33 0.0 34-35 5.719276814332311E-5 36-37 0.0 38-39 5.51045143905026E-6 40-41 0.0 42-43 1.678079096146325E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.005991905171602887 52-53 6.743025271187619E-5 54-55 2.9566787284868175E-5 56-57 0.0 58-59 1.5058534178791725E-6 60-61 7.298124635882498E-5 62-63 9.473138432338378E-4 64-65 0.0012997478892357952 66-67 0.001008936810789655 68-69 0.009213090135070635 70-71 8.056955373376518E-4 72-73 4.632652894694468E-4 74-75 3.512015606478323E-4 76-77 7.293162593766865E-5 78-79 0.0 80-81 9.990248332343932E-5 82-83 0.0 84-85 1.2111507186233023E-5 86-87 1.5571511202914988E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1192.0 20-21 4273.0 22-23 8627.0 24-25 14550.0 26-27 23048.0 28-29 40836.0 30-31 96648.0 32-33 116890.0 34-35 158316.0 36-37 233175.0 38-39 267220.0 40-41 267774.0 42-43 308259.0 44-45 363861.0 46-47 361803.0 48-49 322949.0 50-51 290488.0 52-53 283733.0 54-55 301981.0 56-57 312000.0 58-59 315814.0 60-61 319847.0 62-63 322142.0 64-65 363672.0 66-67 380918.0 68-69 397381.0 70-71 348580.0 72-73 293013.0 74-75 298528.0 76-77 311246.0 78-79 320798.0 80-81 321524.0 82-83 311993.0 84-85 317187.0 86-87 332215.0 88-89 355399.0 90-91 372697.0 92-93 400437.0 94-95 509822.0 96-97 1300733.0 98-99 2946035.0 100-101 2.244194E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.38998102631064 #Duplication Level Percentage of deduplicated Percentage of total 1 86.06642495219222 67.46745419004738 2 8.85209761362398 13.878315279500669 3 2.4949159572650665 5.867292436567446 4 1.0721952101665444 3.361974487258262 5 0.5636005261129945 2.209031727420817 6 0.2960755674700979 1.3925614869801075 7 0.18531421325884997 1.0168744362886852 8 0.12828931141599165 0.8045277350222434 9 0.08058012011175801 0.5685006677992688 >10 0.2543493709988264 2.9486615909134315 >50 0.0045729532527590995 0.23799495168592405 >100 0.0015388704831551634 0.19819949954451008 >500 1.5203830734610142E-5 0.00962981049895428 >1k 3.012981706523608E-5 0.0389817004722539 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.095080716589497E-6 2 0.0 2.1586881910905326E-5 0.0 0.0 8.095080716589497E-6 3 0.0 2.1586881910905326E-5 0.0 5.396720477726332E-6 8.095080716589497E-6 4 0.0 6.20622854938528E-5 0.0 1.6190161433178995E-5 8.095080716589497E-6 5 2.698360238863166E-6 7.285572644930547E-5 0.0 1.6190161433178995E-5 8.095080716589497E-6 6 7.015736621044231E-5 7.285572644930547E-5 0.0 2.1586881910905326E-5 1.0793440955452663E-5 7 7.015736621044231E-5 7.285572644930547E-5 0.0 2.1586881910905326E-5 1.6190161433178995E-5 8 7.015736621044231E-5 8.364916740475813E-5 0.0 2.428524214976849E-5 1.888852167204216E-5 9 7.015736621044231E-5 1.5650489385406362E-4 0.0 6.476064573271598E-5 2.6983602388631658E-5 10-11 7.15065463298739E-5 1.5650489385406362E-4 0.0 8.63475276436213E-5 2.6983602388631658E-5 12-13 7.285572644930547E-5 1.578540739734952E-4 0.0 1.1468031015168455E-4 3.238032286635799E-5 14-15 8.095080716589497E-5 2.3610652090052698E-4 0.0 1.2007703062941087E-4 6.34114656132844E-5 16-17 1.1602949027111613E-4 2.52296682333706E-4 0.0 1.4301309265974776E-4 6.476064573271598E-5 18-19 1.1602949027111613E-4 2.7793110460290607E-4 0.0 1.8618685648155844E-4 7.555408668816864E-5 20-21 1.1602949027111613E-4 3.062638871109693E-4 0.0 2.280114401839375E-4 8.364916740475813E-5 22-23 1.1602949027111613E-4 3.345966696190326E-4 0.0 2.4689996185597965E-4 9.309342824077922E-5 24-25 1.1602949027111613E-4 3.723737129631169E-4 0.0 2.6309012328915867E-4 1.0523604931566346E-4 26-27 1.1602949027111613E-4 3.9396059487402217E-4 0.0 2.981688063943798E-4 1.0523604931566346E-4 28-29 1.1872785050997929E-4 4.047540358294748E-4 0.0 5.180851658617278E-4 1.0928358967395821E-4 30-31 1.1872785050997929E-4 4.843556628759383E-4 0.0 0.0013370374983566987 1.1333113003225297E-4 32-33 1.1872785050997929E-4 4.951491038313908E-4 0.0 0.003016766747049019 1.1333113003225297E-4 34-35 1.2142621074884246E-4 5.680048302806964E-4 0.0 0.005309023769963278 1.241245709877056E-4 36-37 1.2142621074884246E-4 6.368130163717071E-4 0.0 0.008424280665730803 1.241245709877056E-4 38-39 1.2142621074884246E-4 6.772884199546547E-4 0.0 0.013231409431265533 1.241245709877056E-4 40-41 1.2142621074884246E-4 7.447474259262338E-4 0.0 0.018180202109340578 1.268229312265688E-4 42-43 1.241245709877056E-4 7.771277487925918E-4 0.0 0.022875348924962485 1.2817211134600036E-4 44-45 1.3087047158486355E-4 8.756178975110973E-4 0.0 0.028242387440061325 1.3491801194315828E-4 46-47 1.3491801194315828E-4 9.44426083602108E-4 0.0 0.03386172263749387 1.5110817337633727E-4 48-49 1.3491801194315828E-4 9.457752637215397E-4 0.0 0.03921526935139839 1.5650489385406362E-4 50-51 1.497589932569057E-4 0.0010550588533954977 0.0 0.04468484555557402 1.5650489385406362E-4 52-53 1.5380653361520046E-4 0.0010658522943509505 0.0 0.04999252014541787 1.672983348095163E-4 54-55 1.5515571373463203E-4 0.0010766457353064032 0.0 0.05516797508355742 1.6999669504837945E-4 56-57 1.5650489385406362E-4 0.0010874391762618557 0.0 0.06062271030641932 1.7404423540667418E-4 58-59 1.5650489385406362E-4 0.0010874391762618557 0.0 0.06601808160402622 1.7809177576496893E-4 60-61 1.7134587516781102E-4 0.0011036293376950348 0.0 0.07122052014455439 1.807901360038321E-4 62-63 1.9698029743701108E-4 0.001122517859367077 0.0 0.07617740790334604 1.8618685648155844E-4 64-65 1.9832947755644268E-4 0.0012628325917879615 0.0 0.0810803284573604 1.8618685648155844E-4 66-67 2.1451963898962167E-4 0.0012979112748931826 0.0 0.08610737358236248 1.8618685648155844E-4 68-69 2.1856717934791642E-4 0.001326244057401246 0.0 0.09148925307877506 1.9293275707871633E-4 70-71 2.2126553958677959E-4 0.0013464817591927196 0.0 0.09623027201845764 2.0237701791473743E-4 72-73 2.455507817365481E-4 0.0013613227405064672 0.0 0.10007003863835992 2.1047209863132692E-4 74-75 2.455507817365481E-4 0.0013896555230145304 0.0 0.10316640701245541 2.1047209863132692E-4 76-77 2.455507817365481E-4 0.0014409243675529305 0.0 0.10603071640600867 2.131704588701901E-4 78-79 2.455507817365481E-4 0.0014706063301804253 0.0 0.10788718825034652 2.1586881910905326E-4 80-81 2.455507817365481E-4 0.00147465387053872 0.0 0.10855773076970401 2.2261471970621118E-4 82-83 2.4689996185597965E-4 0.0014854473114941729 0.0 0.10919454378607572 2.307098004228007E-4 84-85 2.4959832209484284E-4 0.001501637472927352 0.0 0.10944818964852887 2.3205898054223225E-4 86-87 2.509475022142744E-4 0.001520525994599394 0.0 0.10952374373521703 2.3205898054223225E-4 88 2.509475022142744E-4 0.0016082227023624467 0.0 0.10952914045569476 2.3475734078109542E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 44345 0.0 48.338154 1 CTTATAC 38045 0.0 43.348133 1 GTATCAA 79145 0.0 35.279713 1 TATACAC 55035 0.0 32.85899 3 TTATACA 54385 0.0 31.359962 2 TCAACGC 93545 0.0 29.109982 4 ATCAACG 94040 0.0 29.001535 3 CAACGCA 95680 0.0 28.425274 5 TATCAAC 99260 0.0 27.723715 2 AACGCAG 99535 0.0 27.376087 6 ACATCTC 66435 0.0 25.183426 8 ACACATC 68030 0.0 24.639156 6 TACACAT 73335 0.0 24.573315 5 ACGCAGA 114400 0.0 23.801348 7 CGCAGAG 118120 0.0 23.048206 8 CACATCT 75795 0.0 21.873892 7 GTGGTAT 22160 0.0 21.721281 1 CATCTCC 77180 0.0 21.524925 9 TGGTATC 21820 0.0 20.556984 2 ATACACA 94750 0.0 20.514463 4 >>END_MODULE