##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138937_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6567431 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.707251282883675 33.0 33.0 33.0 33.0 33.0 2 32.715210864034965 33.0 33.0 33.0 33.0 33.0 3 32.716310837525356 33.0 33.0 33.0 33.0 33.0 4 36.64882280453346 37.0 37.0 37.0 37.0 37.0 5 36.67149772871615 37.0 37.0 37.0 37.0 37.0 6 36.66825673539623 37.0 37.0 37.0 37.0 37.0 7 36.64820536371071 37.0 37.0 37.0 37.0 37.0 8 36.62349280867968 37.0 37.0 37.0 37.0 37.0 9 36.65209562156039 37.0 37.0 37.0 37.0 37.0 10-11 36.62426845443827 37.0 37.0 37.0 37.0 37.0 12-13 36.616892282537876 37.0 37.0 37.0 37.0 37.0 14-15 38.758943489470994 40.0 37.0 40.0 37.0 40.0 16-17 38.70320632222859 40.0 37.0 40.0 37.0 40.0 18-19 38.73755034502837 40.0 37.0 40.0 37.0 40.0 20-21 38.73581985975474 40.0 37.0 40.0 37.0 40.0 22-23 38.7378697808661 40.0 37.0 40.0 37.0 40.0 24-25 38.733819050577765 40.0 37.0 40.0 37.0 40.0 26-27 38.62006781975896 40.0 37.0 40.0 37.0 40.0 28-29 38.568645270843426 40.0 37.0 40.0 37.0 40.0 30-31 38.394237275377364 40.0 37.0 40.0 37.0 40.0 32-33 38.41106092881181 40.0 37.0 40.0 37.0 40.0 34-35 38.39030424399386 40.0 37.0 40.0 37.0 40.0 36-37 38.354420733842986 40.0 37.0 40.0 37.0 40.0 38-39 38.30226685745015 40.0 37.0 40.0 37.0 40.0 40-41 38.291960990570786 40.0 37.0 40.0 37.0 40.0 42-43 38.26388956041896 40.0 37.0 40.0 37.0 40.0 44-45 38.19556250700391 40.0 37.0 40.0 37.0 40.0 46-47 38.05673380803713 40.0 37.0 40.0 35.0 40.0 48-49 38.084998937553735 40.0 37.0 40.0 35.0 40.0 50-51 38.04305686796794 40.0 37.0 40.0 33.0 40.0 52-53 37.991168541300354 40.0 37.0 40.0 33.0 40.0 54-55 37.85584599900375 40.0 37.0 40.0 33.0 40.0 56-57 37.75783620765637 40.0 37.0 40.0 33.0 40.0 58-59 37.64520598334995 40.0 37.0 40.0 33.0 40.0 60-61 37.50471837294465 40.0 37.0 40.0 33.0 40.0 62-63 37.35831649739658 37.0 37.0 40.0 33.0 40.0 64-65 37.20666325281468 37.0 37.0 40.0 33.0 40.0 66-67 37.026922119529466 37.0 37.0 40.0 33.0 40.0 68-69 36.817868091145094 37.0 37.0 40.0 33.0 40.0 70-71 36.59060313545301 37.0 37.0 40.0 33.0 40.0 72-73 36.360405756926966 37.0 37.0 38.5 33.0 40.0 74-75 36.158080191486896 37.0 37.0 37.0 33.0 40.0 76-77 34.52733345922162 35.0 33.0 37.0 30.0 37.0 78-79 35.63862977854261 37.0 35.0 37.0 33.0 37.0 80-81 35.66178119736037 37.0 37.0 37.0 33.0 37.0 82-83 35.501602786882735 37.0 33.0 37.0 33.0 37.0 84-85 35.35736146877133 37.0 33.0 37.0 33.0 37.0 86-87 35.25370561975299 37.0 33.0 37.0 33.0 37.0 88-89 35.106054950718445 37.0 33.0 37.0 33.0 37.0 90-91 34.94544783036716 37.0 33.0 37.0 33.0 37.0 92-93 34.93549331080539 37.0 33.0 37.0 33.0 37.0 94-95 34.98200261276828 37.0 33.0 37.0 33.0 37.0 96-97 34.9769367561118 37.0 33.0 37.0 33.0 37.0 98-99 34.966459322642024 37.0 33.0 37.0 33.0 37.0 100 34.94853197148546 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 2.0 17 4.0 18 5.0 19 5.0 20 45.0 21 145.0 22 464.0 23 1511.0 24 3504.0 25 6992.0 26 12291.0 27 20363.0 28 31043.0 29 45955.0 30 64452.0 31 91456.0 32 128513.0 33 182299.0 34 265752.0 35 403506.0 36 733618.0 37 1894567.0 38 2607134.0 39 73804.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.21744103592409 20.80391860987957 14.543099120493233 23.435541233703102 2 13.961395254856884 20.867413757373317 43.34158973272807 21.829601255041737 3 17.922731125762876 27.348243171492783 30.52166060062146 24.207365102122886 4 11.843915832537867 18.36718193156502 39.58320993399093 30.20569230190618 5 12.56923749941187 38.58814809017407 35.796767411793134 13.045846998620922 6 28.583438080279684 38.869372500443475 19.192848327690577 13.354341091586264 7 25.503945149937625 33.37513557432123 23.226372686671546 17.894546589069606 8 23.776922818069956 37.195335588603825 21.751153533246104 17.276588060080115 9 25.203629851611687 17.067191113237428 21.31763546506998 36.41154357008091 10-11 23.70230896557185 27.23083260113811 29.012800345971755 20.05405808731828 12-13 24.857113056401058 24.619828456489067 29.120279926851143 21.40277856025873 14-15 21.818576352538184 26.129567435992513 27.15020012928268 24.90165608218663 16-17 21.19488579324244 29.298785171857915 27.54693578052057 21.959393254379073 18-19 21.069334417065058 28.23226464046596 29.622024197894127 21.07637674457486 20-21 22.254155000222315 27.336146476738882 29.52861067950935 20.881087843529457 22-23 21.493421560578795 27.664607939568846 29.572330244861977 21.269640254990385 24-25 21.344944847187648 27.84883851099972 29.760434088417824 21.045782553394805 26-27 21.532554587730758 28.109118331498824 29.433056951009107 20.925270129761312 28-29 21.00432386417114 28.162435844136642 29.703944673439082 21.12929561825313 30-31 21.96155277392731 27.858539881960148 29.411518297122836 20.768389046989704 32-33 20.964036860772627 28.389147168754157 29.617031668567446 21.029784301905767 34-35 21.125427937695445 28.429858772223493 29.77921991204245 20.66549337803861 36-37 21.206332117201246 28.239696909569307 29.490797732055533 21.06317324117391 38-39 21.162697913022118 27.883644249624528 29.677594620417896 21.276063216935455 40-41 21.36127516174047 27.821169802831225 29.706299661137486 21.11125537429082 42-43 21.50224560690438 27.668693002912843 29.649981522841394 21.179079867341382 44-45 21.357640040824375 28.262406658585192 29.19844557000913 21.181507730581302 46-47 21.707100424052292 27.817344428567697 28.607331957099685 21.86822319028033 48-49 21.58244323169903 27.859533917015796 28.831485785190825 21.726537066094355 50-51 21.314039998624096 28.259873063946262 28.78094370236635 21.645143235063294 52-53 21.418648843457177 28.38876875696219 28.80527979817836 21.387302601402265 54-55 21.407345414568223 28.395793410091542 28.587169263986993 21.609691911353245 56-57 21.771428666531303 28.70841335831999 28.02001817413215 21.50013980101655 58-59 21.333984085137285 29.014904719202022 28.56860891891127 21.082502276749423 60-61 21.70430226754937 29.118765108479998 27.94476333351849 21.23216929045214 62-63 21.454794641657777 29.13028028082911 28.011677339854213 21.403247737658898 64-65 21.397421691805953 29.000971534665776 28.183432596073672 21.4181741774546 66-67 21.59586507818338 28.860420174940078 27.924213605005637 21.619501141870906 68-69 21.683399795320604 28.62020503228994 28.168137064615166 21.52825810777429 70-71 21.64301199286622 28.2072907655998 28.300850429130314 21.848846812403664 72-73 21.710777739822603 28.361445791783336 28.353673258122253 21.574103210271808 74-75 21.52140721886081 28.51310348271326 28.26686985313367 21.698619445292262 76-77 21.53231039996441 28.439280524667122 28.1851305294901 21.843278545878377 78-79 21.709145777307338 28.4421002862048 28.103136303816438 21.74561763267143 80-81 21.573277716938073 28.380489670604923 28.232044496084 21.814188116373003 82-83 21.69108674766534 28.31072464354208 28.335719033846058 21.66246957494652 84-85 22.066016101451304 28.20619119802942 28.109197575376633 21.618595125142644 86-87 21.47159618364278 28.36686450845896 28.300829392294986 21.860709915603273 88-89 21.865839111869146 28.221209159339878 28.275388341840063 21.637563386950916 90-91 22.070176403756005 28.15063325010913 28.24314634730241 21.536043998832458 92-93 21.885984275618167 28.167471467665315 28.214283327429847 21.73226092928667 94-95 21.700407000358428 28.315008173025475 28.25989146922316 21.724693357392937 96-97 21.655010414001122 28.399739238301457 28.466354093414154 21.478896254283267 98-99 22.7369782360478 30.28255223087047 28.682189207799112 18.29828032528262 100 21.836939827325093 31.54140543266415 22.395325726627778 24.226329013382976 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 834.0 1 865.5 2 1702.0 3 2777.5 4 4344.5 5 7742.0 6 10379.0 7 11807.5 8 12242.0 9 11297.5 10 9828.5 11 8641.5 12 9660.0 13 13835.0 14 23530.5 15 36562.5 16 46868.0 17 52315.5 18 52341.0 19 48068.0 20 41937.0 21 36033.5 22 32718.0 23 33282.0 24 37766.5 25 46468.0 26 59528.0 27 74386.0 28 85928.5 29 97741.5 30 109594.5 31 121946.5 32 138337.5 33 155721.5 34 175498.5 35 194508.5 36 214073.0 37 231786.5 38 240516.0 39 248733.0 40 260007.5 41 266861.5 42 268742.0 43 271812.0 44 274554.0 45 277906.0 46 288189.5 47 299121.0 48 295366.0 49 287551.0 50 281740.0 51 263165.0 52 238302.0 53 217811.5 54 199773.0 55 178046.5 56 155451.0 57 134228.5 58 113565.0 59 95908.0 60 78041.0 61 59302.0 62 43194.0 63 30837.5 64 22055.5 65 15637.0 66 11008.0 67 7994.5 68 5893.5 69 4251.0 70 3204.0 71 2264.0 72 1589.0 73 1139.0 74 749.0 75 476.5 76 298.0 77 158.5 78 94.0 79 59.5 80 41.0 81 29.5 82 21.5 83 16.0 84 13.5 85 11.0 86 8.0 87 7.0 88 5.5 89 4.0 90 3.5 91 2.5 92 1.0 93 0.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 2.4362646520382171E-4 7 0.0 8 0.0 9 0.0 10-11 0.006410421365675559 12-13 1.5226654075238857E-5 14-15 0.006486554636051753 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 87.0 20-21 458.0 22-23 946.0 24-25 1467.0 26-27 2633.0 28-29 5863.0 30-31 12866.0 32-33 15971.0 34-35 22587.0 36-37 36538.0 38-39 45353.0 40-41 43629.0 42-43 49732.0 44-45 59240.0 46-47 57199.0 48-49 52346.0 50-51 45698.0 52-53 42023.0 54-55 48954.0 56-57 57079.0 58-59 55449.0 60-61 61186.0 62-63 57208.0 64-65 53860.0 66-67 59439.0 68-69 48773.0 70-71 48829.0 72-73 44212.0 74-75 43109.0 76-77 43234.0 78-79 47488.0 80-81 50669.0 82-83 47309.0 84-85 45654.0 86-87 47924.0 88-89 53573.0 90-91 56949.0 92-93 59443.0 94-95 64479.0 96-97 193556.0 98-99 398026.0 100-101 4386393.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.17075341493924 #Duplication Level Percentage of deduplicated Percentage of total 1 88.04479790937098 72.34707378479082 2 8.00038236684725 13.147948933828665 3 2.1858657686490526 5.388427112214539 4 0.8091710068009073 2.6596076508142197 5 0.3850384202702376 1.5819448543651717 6 0.20231864693669105 0.9974805389207397 7 0.11516053665944936 0.6623979642682981 8 0.06877006464633117 0.45207104195064884 9 0.04788678148064317 0.3541403621592908 >10 0.13621593483906044 1.6412727518549053 >50 0.002418773180955758 0.13480966960393415 >100 0.0015593698154056936 0.2677221616906541 >500 3.187850036512736E-4 0.2170501443076876 >1k 9.563549943701479E-5 0.1480530292303852 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 1.5226654075238857E-5 0.0 7 0.0 0.0 0.0 7.613327037619428E-5 0.0 8 0.0 0.0 0.0 7.613327037619428E-5 0.0 9 0.0 0.0 0.0 7.613327037619428E-5 0.0 10-11 0.0 0.0 0.0 7.613327037619428E-5 0.0 12-13 0.0 0.0 0.0 7.613327037619428E-5 0.0 14-15 0.0 0.0 0.0 8.374659741381371E-5 0.0 16-17 0.0 0.0 0.0 9.135992445143315E-5 0.0 18-19 1.5226654075238857E-5 0.0 0.0 1.2181323260191086E-4 0.0 20-21 1.5226654075238857E-5 0.0 0.0 1.827198489028663E-4 0.0 22-23 1.5226654075238857E-5 0.0 0.0 2.13173157053344E-4 0.0 24-25 1.5226654075238857E-5 0.0 0.0 2.8169310039191886E-4 0.0 26-27 1.5226654075238857E-5 0.0 0.0 4.035063329938297E-4 0.0 28-29 1.5226654075238857E-5 0.0 0.0 7.46106049686704E-4 0.0 30-31 2.2839981112858287E-5 0.0 0.0 0.0017129985834643713 0.0 32-33 3.0453308150477714E-5 0.0 0.0 0.0034259971669287426 0.0 34-35 3.0453308150477714E-5 0.0 0.0 0.005260808982995024 0.0 36-37 3.0453308150477714E-5 0.0 0.0 0.00787218015689849 0.0 38-39 3.0453308150477714E-5 0.0 0.0 0.012523922976883959 0.0 40-41 3.0453308150477714E-5 0.0 0.0 0.018104491695459003 0.0 42-43 3.0453308150477714E-5 0.0 0.0 0.023365300678454028 0.0 44-45 3.0453308150477714E-5 0.0 0.0 0.02813124340400379 0.0 46-47 3.0453308150477714E-5 0.0 0.0 0.03410770512853504 0.0 48-49 3.0453308150477714E-5 0.0 0.0 0.040023260236765335 0.0 50-51 3.0453308150477714E-5 0.0 0.0 0.04662401477838138 0.0 52-53 3.0453308150477714E-5 0.0 0.0 0.05320192933888457 0.0 54-55 3.0453308150477714E-5 0.0 0.0 0.058972831233400094 0.0 56-57 3.0453308150477714E-5 0.0 0.0 0.06298505458222553 0.0 58-59 3.0453308150477714E-5 0.0 0.0 0.0672028377610667 0.0 60-61 3.0453308150477714E-5 0.0 0.0 0.07231138020330932 0.0 62-63 3.0453308150477714E-5 0.0 0.0 0.0768032431555048 0.0 64-65 3.0453308150477714E-5 0.0 0.0 0.08073171990691641 0.0 66-67 3.0453308150477714E-5 0.0 0.0 0.0843328235957104 0.0 68-69 3.0453308150477714E-5 0.0 0.0 0.0887561666045673 0.0 70-71 3.0453308150477714E-5 0.0 0.0 0.0925171501611513 0.0 72-73 3.0453308150477714E-5 0.0 0.0 0.09613348050402053 0.0 74-75 3.0453308150477714E-5 0.0 0.0 0.09882098494830019 0.0 76-77 3.0453308150477714E-5 0.0 0.0 0.10140190281405317 0.0 78-79 3.0453308150477714E-5 0.0 0.0 0.10306160810825421 0.0 80-81 3.0453308150477714E-5 0.0 0.0 0.10370874090645185 0.0 82-83 3.0453308150477714E-5 0.0 0.0 0.1041579272016714 0.0 84-85 3.0453308150477714E-5 0.0 0.0 0.10433303372353664 0.0 86-87 3.0453308150477714E-5 0.0 0.0 0.1043939403398376 0.0 88 3.0453308150477714E-5 0.0 0.0 0.10440916699391284 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10670 0.0 46.380463 1 CTTATAC 6705 0.0 42.148495 1 GTATCAA 19680 0.0 38.72663 1 TATACAC 9705 0.0 32.808952 3 ATCAACG 23715 0.0 31.706095 3 TCAACGC 23965 0.0 31.413067 4 CAACGCA 24340 0.0 30.930508 5 TATCAAC 24570 0.0 30.758905 2 AACGCAG 24820 0.0 30.366688 6 TTATACA 10905 0.0 27.596012 2 ACGCAGA 28330 0.0 26.528906 7 CGCAGAG 28545 0.0 26.344227 8 TGCGCGA 380 3.6379788E-12 23.456875 94 GCAGAGT 32730 0.0 22.875547 9 ACATCTC 12620 0.0 22.666271 8 ACACATC 13220 0.0 21.86327 6 TACACAT 15065 0.0 21.44949 5 TACATGG 24275 0.0 21.246796 2 CACATCT 13975 0.0 20.437916 7 GTACATG 26520 0.0 20.075033 1 >>END_MODULE