##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138935_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6788180 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42460571169297 34.0 31.0 34.0 31.0 34.0 2 32.55619105562905 34.0 31.0 34.0 31.0 34.0 3 32.6058688779614 34.0 31.0 34.0 31.0 34.0 4 36.13589533571591 37.0 35.0 37.0 35.0 37.0 5 36.043141607912574 37.0 35.0 37.0 35.0 37.0 6 36.06311839108568 37.0 35.0 37.0 35.0 37.0 7 36.016293910886276 37.0 35.0 37.0 35.0 37.0 8 36.01214758595087 37.0 35.0 37.0 35.0 37.0 9 37.736716174291196 39.0 38.0 39.0 35.0 39.0 10-11 37.66588017701358 39.0 37.0 39.0 35.0 39.0 12-13 37.64459693172544 39.0 37.0 39.0 35.0 39.0 14-15 39.068329213426864 41.0 38.0 41.0 35.5 41.0 16-17 39.04505950048467 41.0 38.0 41.0 35.0 41.0 18-19 39.043614488714205 41.0 38.5 41.0 35.0 41.0 20-21 39.03561163581181 41.0 39.0 41.0 35.0 41.0 22-23 39.025009835195455 41.0 39.0 41.0 35.0 41.0 24-25 38.98470264332623 41.0 39.0 41.0 35.0 41.0 26-27 38.93019563619639 41.0 38.0 41.0 35.0 41.0 28-29 38.86832282674901 40.0 38.0 41.0 35.0 41.0 30-31 38.78887628918248 40.0 38.0 41.0 34.5 41.0 32-33 38.68320278987681 40.0 38.0 41.0 34.0 41.0 34-35 38.58723964809103 40.0 38.0 41.0 34.0 41.0 36-37 38.55184848108097 40.0 38.0 41.0 34.0 41.0 38-39 38.46214427877186 40.0 38.0 41.0 34.0 41.0 40-41 38.478407457199864 40.0 38.0 41.0 34.0 41.0 42-43 38.42908457253478 40.0 38.0 41.0 33.5 41.0 44-45 38.344379061827524 40.0 38.0 41.0 33.0 41.0 46-47 38.28787513840301 40.0 38.0 41.0 33.0 41.0 48-49 38.24720040683795 40.0 38.0 41.0 33.0 41.0 50-51 38.15693767403277 40.0 37.5 41.0 33.0 41.0 52-53 38.05054392223917 40.0 37.0 41.0 33.0 41.0 54-55 37.9313564239926 40.0 37.0 41.0 33.0 41.0 56-57 37.81929493486147 40.0 37.0 41.0 32.0 41.0 58-59 37.73257173937341 40.0 36.0 41.0 32.0 41.0 60-61 37.5927276068984 39.5 36.0 41.0 32.0 41.0 62-63 37.427869823288596 39.0 35.5 41.0 32.0 41.0 64-65 37.244287962323426 39.0 35.0 41.0 32.0 41.0 66-67 37.029167032794675 39.0 35.0 41.0 32.0 41.0 68-69 36.71694083434321 38.0 35.0 40.5 31.0 41.0 70-71 36.41011439289412 37.0 35.0 40.0 31.0 41.0 72-73 36.1166445111201 37.0 35.0 39.5 31.0 41.0 74-75 35.858686481836514 36.0 35.0 39.0 31.0 41.0 76-77 35.572193078642215 36.0 35.0 39.0 31.0 40.5 78-79 35.295498088812714 35.5 34.0 37.5 31.0 39.5 80-81 35.01389744131908 35.0 34.0 37.0 31.0 39.0 82-83 34.711524848639684 35.0 34.0 37.0 31.0 39.0 84-85 34.46749039568435 35.0 34.0 36.0 31.0 38.0 86-87 34.293583008266424 35.0 34.0 36.0 31.0 37.0 88-89 34.14078620122032 35.0 34.0 36.0 31.0 37.0 90-91 33.995770446518776 35.0 34.0 35.0 31.0 36.5 92-93 33.93104055065096 35.0 34.0 35.0 31.0 36.0 94-95 33.87258816522875 35.0 34.0 35.0 31.0 36.0 96-97 33.86051977270357 35.0 34.0 35.0 31.0 36.0 98-99 33.9918249333941 35.0 34.0 35.0 31.0 36.0 100 31.24268557100313 33.0 29.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 12.0 19 39.0 20 78.0 21 268.0 22 1037.0 23 3025.0 24 7928.0 25 16235.0 26 29189.0 27 46488.0 28 67826.0 29 92783.0 30 120204.0 31 151066.0 32 187539.0 33 236230.0 34 307104.0 35 421784.0 36 616149.0 37 1125838.0 38 1835081.0 39 1398188.0 40 124086.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.68312566844132 21.119180693499583 14.748842841527479 24.44885079653162 2 14.40697967355706 20.910837381090236 42.27225382345445 22.40992912189825 3 18.189367412626293 26.094297298726655 30.62999757371981 25.086337714927247 4 12.574681284232298 18.595529287673575 38.12665545109293 30.7031339770012 5 12.847102822023992 37.885342807361525 36.07420693467511 13.193347435939367 6 29.54771744495274 38.310946098256316 18.569353282208816 13.571983174582128 7 25.936952172747336 32.6269928021944 22.952411397458526 18.48364362759974 8 23.471608000966384 38.12887990595417 21.16714642216323 17.23236567091621 9 24.534028266781377 17.479221234557716 21.48605369922424 36.50069679943667 10-11 23.91766036136509 27.204507720151355 28.885305206781233 19.992526711702325 12-13 24.64317931533474 24.30772850183595 29.16555597352073 21.88353620930858 14-15 21.66485297456063 25.951886360097458 26.482492580116112 25.9007680852258 16-17 21.4567696739162 29.3564768553731 27.22586360993394 21.960889860776767 18-19 21.53007504369956 28.185770077583435 29.009194972710745 21.27495990600626 20-21 22.045479289070833 27.252377908401154 29.05387656930611 21.648266233221904 22-23 21.768264745737063 27.67198924203196 28.82205539634497 21.737690615886006 24-25 21.789798996559796 27.765009525342304 28.99809404724322 21.44709743085468 26-27 21.820241435697508 27.92649732450792 28.94933300697589 21.30392823281868 28-29 21.522151034614087 27.63998556556619 29.175396447066376 21.66246695275335 30-31 21.808651587968868 27.950046191400435 28.83125928945197 21.41004293117873 32-33 22.15960062824821 27.479796964336543 28.915321743018975 21.44528066439627 34-35 21.82560638688444 27.534052454853086 29.01921908591674 21.621122072345734 36-37 21.60029212255989 27.915812598951735 28.883034940465972 21.600860338022407 38-39 21.57987938202207 27.468065454663204 29.18046872852596 21.771586434788766 40-41 21.784600289886036 27.41367605356822 29.115838484435013 21.68588517211073 42-43 21.941642195196394 27.404792167335312 28.94685414432836 21.706711493139935 44-45 21.762300849560408 27.743765631442376 28.679615302950623 21.814318216046594 46-47 22.03637570736779 27.48124054543136 28.24319575100654 22.239187996194318 48-49 21.986377214364133 27.527876564943842 28.27082377550768 22.214922445184342 50-51 21.699580692494 27.70283577384958 28.43833664993029 22.159246883726137 52-53 21.800442843506616 27.746152204056752 28.604185537838823 21.84921941459781 54-55 21.842761488838736 27.737135217841345 28.299729190547417 22.120374102772498 56-57 22.058928902884915 28.03186946490468 27.930918081261787 21.978283550948614 58-59 21.67819627446258 28.37489454225746 28.36877437373566 21.578134809544306 60-61 21.99940321576042 28.674494713544398 27.747627683017566 21.57847438767762 62-63 21.69668977580637 28.976378863400416 27.676569370495237 21.650361990297984 64-65 21.654051784914785 28.862223147567455 27.77463498939097 21.709090078126785 66-67 21.772921293101824 28.656765738725763 27.762334925083852 21.807978043088553 68-69 21.793557134615877 28.38757300689034 27.901659111019868 21.917210747473913 70-71 21.840654434785858 28.046124514285857 28.023335514536917 22.089885536391364 72-73 21.963188551098177 27.915579432079817 28.028267359894244 22.092964656927766 74-75 21.831437096039842 28.04047240613831 28.04161870997116 22.086471787850684 76-77 21.931113976170575 28.03678295113 27.93187945881661 22.100223613882815 78-79 21.89686445609346 27.996769987075016 27.96735973478894 22.13900582204258 80-81 21.91887840381476 28.037707869694394 27.998784581799868 22.044629144690976 82-83 21.904015339099423 28.01638267456331 28.09509853614055 21.98450345019671 84-85 22.038813767714007 28.00173800023469 27.992256285288402 21.967191946762902 86-87 21.871297975028366 28.0168344814781 28.083397694285367 22.02846984920817 88-89 21.938198909412925 28.00936105066268 28.04882479475721 22.003615245167186 90-91 21.90305868686919 28.10756307506692 28.029673406923557 21.959704831140332 92-93 21.964721866786384 28.05598460561784 28.074199181629584 21.905094345966194 94-95 21.819410537816808 28.16447255553306 28.086312334307305 21.929804572342825 96-97 21.85310769016695 28.282895346466287 28.167851769773698 21.696145193593065 98-99 22.87570557154493 30.095009390118744 28.45188663131068 18.577398407025647 100 22.029131594728423 31.21762102446221 21.82223957530478 24.931007805504592 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1373.0 1 1111.5 2 1309.0 3 1814.0 4 2321.5 5 3948.5 6 5466.0 7 6650.0 8 7469.5 9 7222.0 10 6069.5 11 4755.5 12 4868.0 13 6815.5 14 12433.0 15 20848.5 16 27944.5 17 32195.5 18 33599.0 19 32983.0 20 31254.5 21 29114.0 22 28683.0 23 31667.0 24 38327.5 25 48523.0 26 61889.0 27 76487.5 28 91515.0 29 108875.5 30 125326.5 31 140464.0 32 156599.5 33 170705.5 34 184752.5 35 199396.5 36 214543.5 37 229471.5 38 239908.5 39 247498.0 40 255552.0 41 262749.0 42 268087.0 43 275877.5 44 290579.0 45 307556.5 46 308391.0 47 298853.5 48 289543.5 49 279711.5 50 273770.0 51 266371.5 52 254427.5 53 238671.5 54 221104.0 55 203821.5 56 186575.0 57 168454.5 58 149377.0 59 129284.0 60 108399.0 61 88455.0 62 71184.0 63 56027.0 64 42772.0 65 32302.5 66 24408.5 67 18821.0 68 14823.5 69 11387.0 70 8697.0 71 6698.5 72 5099.5 73 3791.5 74 2845.0 75 2171.0 76 1649.5 77 1236.5 78 926.0 79 704.0 80 523.5 81 371.0 82 280.5 83 193.0 84 134.5 85 101.5 86 80.0 87 59.0 88 39.0 89 27.5 90 18.5 91 15.5 92 12.0 93 7.5 94 3.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006923799899236614 3 1.620463806204314E-4 4 0.0 5 0.011520024513197941 6 0.012227135992268915 7 0.0 8 0.0 9 0.0 10-11 5.1560212015591804E-5 12-13 2.209723372096792E-5 14-15 1.4731489147311946E-5 16-17 2.5043531550430305E-4 18-19 0.0010091070065908682 20-21 0.0 22-23 1.178760243334424E-4 24-25 0.0 26-27 1.4745063021136605E-5 28-29 0.0 30-31 0.0 32-33 0.0 34-35 5.2065672068529724E-5 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.822869337154979E-5 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.005801522446646656 52-53 5.609262462919771E-5 54-55 9.695707492139812E-5 56-57 0.0 58-59 1.6452063212117274E-5 60-61 1.660498744081775E-4 62-63 9.469953304749718E-4 64-65 0.0012102692104212134 66-67 0.0010786575952133628 68-69 0.009055037122186157 70-71 0.0011583030894839154 72-73 8.162510617918024E-4 74-75 5.194162263121574E-4 76-77 9.946020235630261E-5 78-79 0.0 80-81 2.307517078395401E-4 82-83 0.0 84-85 0.0 86-87 3.0485420300108005E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 212.0 20-21 847.0 22-23 1525.0 24-25 2718.0 26-27 4428.0 28-29 7586.0 30-31 18781.0 32-33 22725.0 34-35 31306.0 36-37 45851.0 38-39 49914.0 40-41 49333.0 42-43 56529.0 44-45 66037.0 46-47 65550.0 48-49 59686.0 50-51 52893.0 52-53 50694.0 54-55 54040.0 56-57 55530.0 58-59 55420.0 60-61 56031.0 62-63 57144.0 64-65 65403.0 66-67 70523.0 68-69 72349.0 70-71 66303.0 72-73 52687.0 74-75 52639.0 76-77 54943.0 78-79 57085.0 80-81 57231.0 82-83 55461.0 84-85 55856.0 86-87 59063.0 88-89 63308.0 90-91 66806.0 92-93 71652.0 94-95 91649.0 96-97 235479.0 98-99 536089.0 100-101 4138874.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.57629010788682 #Duplication Level Percentage of deduplicated Percentage of total 1 88.77926056708974 75.08620497285857 2 7.8634749290097075 13.301270737040394 3 1.9488163099969116 4.9447096080384085 4 0.693825238666189 2.347246586784216 5 0.30761691662979124 1.3008548791487429 6 0.1528317304897911 0.7755564465356966 7 0.08222216560968232 0.4867832012332244 8 0.05194847764675963 0.3514887612892333 9 0.03098891778073337 0.23588349303174816 >10 0.08776861573754047 1.074923076561418 >50 9.676021014220182E-4 0.0544360035135312 >100 2.7852924172968023E-4 0.04064223396471155 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4731489147311944E-5 2 0.0 1.4731489147311944E-5 0.0 0.0 1.4731489147311944E-5 3 0.0 1.4731489147311944E-5 0.0 0.0 1.4731489147311944E-5 4 0.0 1.4731489147311944E-5 0.0 0.0 1.4731489147311944E-5 5 0.0 5.892595658924778E-5 0.0 1.4731489147311944E-5 1.4731489147311944E-5 6 0.0 5.892595658924778E-5 0.0 1.4731489147311944E-5 1.4731489147311944E-5 7 0.0 7.365744573655973E-5 0.0 1.4731489147311944E-5 1.4731489147311944E-5 8 0.0 7.365744573655973E-5 0.0 2.946297829462389E-5 1.4731489147311944E-5 9 0.0 1.0312042403118362E-4 0.0 7.365744573655973E-5 1.4731489147311944E-5 10-11 0.0 1.1785191317849556E-4 0.0 8.102319031021569E-5 1.4731489147311944E-5 12-13 0.0 1.1785191317849556E-4 0.0 1.1785191317849556E-4 1.4731489147311944E-5 14-15 0.0 1.3258340232580752E-4 0.0 1.1785191317849556E-4 1.4731489147311944E-5 16-17 0.0 1.3258340232580752E-4 0.0 1.3258340232580752E-4 1.4731489147311944E-5 18-19 0.0 1.3258340232580752E-4 0.0 1.3994914689946348E-4 1.4731489147311944E-5 20-21 0.0 1.5468063604677542E-4 0.0 1.6204638062043139E-4 1.4731489147311944E-5 22-23 0.0 1.6941212519408738E-4 0.0 1.6941212519408738E-4 1.4731489147311944E-5 24-25 0.0 1.7677786976774335E-4 0.0 2.1360659263602318E-4 1.4731489147311944E-5 26-27 0.0 1.7677786976774335E-4 0.0 3.3145850581451877E-4 1.4731489147311944E-5 28-29 0.0 1.7677786976774335E-4 0.0 8.175976476758129E-4 1.4731489147311944E-5 30-31 0.0 1.9150935891505528E-4 0.0 0.002747422725973678 1.4731489147311944E-5 32-33 0.0 2.0624084806236724E-4 0.0 0.0066954618174532785 1.4731489147311944E-5 34-35 0.0 2.5043531550430305E-4 0.0 0.0119619691876173 1.4731489147311944E-5 36-37 0.0 3.0199552751989484E-4 0.0 0.020093751196933494 1.4731489147311944E-5 38-39 0.0 3.0936127209355084E-4 0.0 0.03168743315586799 3.682872286827986E-5 40-41 0.0 3.2409276124086277E-4 0.0 0.04220571640704872 4.419446744193584E-5 42-43 0.0 3.3145850581451877E-4 0.0 0.051103535852025136 4.419446744193584E-5 44-45 0.0 3.830187178301106E-4 0.0 0.060833684433824683 4.419446744193584E-5 46-47 0.0 4.272131852720464E-4 0.0 0.0699819391943054 5.156021201559181E-5 48-49 0.0 4.4194467441935835E-4 0.0 0.07832732779625762 5.892595658924778E-5 50-51 0.0 4.566761635666703E-4 0.0 0.08523639620634692 5.892595658924778E-5 52-53 0.0 4.566761635666703E-4 0.0 0.0926684324811658 7.365744573655973E-5 54-55 0.0 4.935048864349502E-4 0.0 0.09923867664086691 8.838893488387167E-5 56-57 0.0 5.303336093032301E-4 0.0 0.10485137400599276 8.838893488387167E-5 58-59 0.0 5.745280767451658E-4 0.0 0.11069977519747562 8.838893488387167E-5 60-61 0.0 5.892595658924778E-4 0.0 0.11608413448081814 8.838893488387167E-5 62-63 0.0 6.039910550397898E-4 0.0 0.1209234286657101 1.0312042403118362E-4 64-65 0.0 6.260882887607576E-4 0.0 0.12576272285060208 1.0312042403118362E-4 66-67 0.0 6.629170116290375E-4 0.0 0.1310144987316188 1.0312042403118362E-4 68-69 0.0 6.776485007763495E-4 0.0 0.1358979873839527 1.0312042403118362E-4 70-71 0.0 7.144772236446293E-4 0.0 0.14067835561225542 1.0312042403118362E-4 72-73 0.0 7.365744573655973E-4 0.0 0.1441623527955947 1.3258340232580752E-4 74-75 0.0 7.439402019392533E-4 0.0 0.1469024097769947 1.3258340232580752E-4 76-77 0.0 7.586716910865652E-4 0.0 0.14948042037777431 1.3258340232580752E-4 78-79 0.0 7.660374356602211E-4 0.0 0.15124083333087807 1.3258340232580752E-4 80-81 0.0 7.660374356602211E-4 0.0 0.1517269724727394 1.4731489147311945E-4 82-83 0.0 7.660374356602211E-4 0.0 0.15224994033746897 1.7677786976774335E-4 84-85 0.0 7.734031802338771E-4 0.0 0.15241935246266303 1.7677786976774335E-4 86-87 0.0 8.10231903102157E-4 0.0 0.15250037565297325 1.8414361434139931E-4 88 0.0 8.24963392249469E-4 0.0 0.15251510714212058 1.9150935891505528E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8320 0.0 48.198128 1 CTTATAC 8385 0.0 45.566257 1 TATACAC 11730 0.0 35.11744 3 GTATCAA 14710 0.0 34.44089 1 TTATACA 11875 0.0 33.131306 2 TCAACGC 17035 0.0 28.824839 4 ATCAACG 17115 0.0 28.690105 3 CAACGCA 17380 0.0 28.276865 5 TATCAAC 18160 0.0 27.411291 2 AACGCAG 18195 0.0 27.03021 6 ACATCTC 14770 0.0 26.087254 8 TACACAT 16615 0.0 24.564594 5 ACACATC 15750 0.0 24.254496 6 ACGCAGA 20830 0.0 23.64727 7 CGCAGAG 21050 0.0 23.340178 8 CACATCT 16315 0.0 23.255882 7 CATCTCC 16415 0.0 23.191088 9 ATACACA 20090 0.0 22.15868 4 GTGGTAT 4535 0.0 20.784103 1 GCAGAGT 25105 0.0 19.553478 9 >>END_MODULE