##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138934_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9258583 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.72373310257088 33.0 33.0 33.0 33.0 33.0 2 32.71448751931046 33.0 33.0 33.0 33.0 33.0 3 32.71196629117004 33.0 33.0 33.0 33.0 33.0 4 36.640479974095385 37.0 37.0 37.0 37.0 37.0 5 36.65747533936889 37.0 37.0 37.0 37.0 37.0 6 36.57591447848985 37.0 37.0 37.0 37.0 37.0 7 36.628882735079436 37.0 37.0 37.0 37.0 37.0 8 36.632812170069656 37.0 37.0 37.0 37.0 37.0 9 36.642544760899156 37.0 37.0 37.0 37.0 37.0 10-11 36.6022483678118 37.0 37.0 37.0 37.0 37.0 12-13 36.57276675059239 37.0 37.0 37.0 37.0 37.0 14-15 38.675853583642336 40.0 37.0 40.0 37.0 40.0 16-17 38.62462997847511 40.0 37.0 40.0 37.0 40.0 18-19 38.65137553986393 40.0 37.0 40.0 37.0 40.0 20-21 38.67252020262288 40.0 37.0 40.0 37.0 40.0 22-23 38.511274938838035 40.0 37.0 40.0 37.0 40.0 24-25 38.67045938532098 40.0 37.0 40.0 37.0 40.0 26-27 38.45400070502331 40.0 37.0 40.0 37.0 40.0 28-29 38.45064749036932 40.0 37.0 40.0 37.0 40.0 30-31 38.43386571063791 40.0 37.0 40.0 37.0 40.0 32-33 38.42810976553232 40.0 37.0 40.0 37.0 40.0 34-35 38.33387322925408 40.0 37.0 40.0 37.0 40.0 36-37 33.05086723890551 40.0 33.0 40.0 8.5 40.0 38-39 37.187433431719214 40.0 35.0 40.0 33.0 40.0 40-41 37.795479414383436 40.0 37.0 40.0 33.0 40.0 42-43 38.01344377294476 40.0 37.0 40.0 33.0 40.0 44-45 38.01708597727999 40.0 37.0 40.0 33.0 40.0 46-47 37.901577762435274 40.0 37.0 40.0 33.0 40.0 48-49 37.87043990003066 40.0 37.0 40.0 33.0 40.0 50-51 37.808357300813874 40.0 37.0 40.0 33.0 40.0 52-53 37.7199286512804 40.0 37.0 40.0 33.0 40.0 54-55 37.61575327534466 40.0 37.0 40.0 33.0 40.0 56-57 37.51757252337264 40.0 37.0 40.0 33.0 40.0 58-59 37.35024144117318 37.0 37.0 40.0 33.0 40.0 60-61 37.13620674362119 37.0 37.0 40.0 33.0 40.0 62-63 36.89263336187423 37.0 37.0 40.0 33.0 40.0 64-65 36.66526190172743 37.0 37.0 40.0 33.0 40.0 66-67 36.38148202466975 37.0 37.0 40.0 33.0 40.0 68-69 36.10121860234169 37.0 37.0 38.5 33.0 40.0 70-71 35.83422953880676 37.0 37.0 37.0 33.0 40.0 72-73 35.58356100157782 37.0 33.0 37.0 33.0 40.0 74-75 35.303075706122954 37.0 33.0 37.0 33.0 40.0 76-77 33.43947937306898 35.0 33.0 37.0 27.0 37.0 78-79 34.96678536887451 37.0 33.0 37.0 33.0 37.0 80-81 35.026372108686004 37.0 33.0 37.0 33.0 37.0 82-83 35.124889367884585 37.0 33.0 37.0 33.0 37.0 84-85 34.98403571388452 37.0 33.0 37.0 33.0 37.0 86-87 34.92810629617635 37.0 33.0 37.0 33.0 37.0 88-89 34.84510966380985 37.0 33.0 37.0 33.0 37.0 90-91 34.70443248131194 37.0 33.0 37.0 33.0 37.0 92-93 34.68711802537811 37.0 33.0 37.0 33.0 37.0 94-95 34.65361018843366 37.0 33.0 37.0 33.0 37.0 96-97 34.633852189063234 37.0 33.0 37.0 33.0 37.0 98-99 34.59331065027534 37.0 33.0 37.0 33.0 37.0 100 34.5431880178969 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 3.0 20 58.0 21 277.0 22 1061.0 23 3258.0 24 7665.0 25 15566.0 26 27820.0 27 45180.0 28 66339.0 29 94182.0 30 127672.0 31 171656.0 32 228209.0 33 309040.0 34 438581.0 35 697985.0 36 1382819.0 37 3027169.0 38 2541176.0 39 72866.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.26972961197194 19.812189403065243 14.037191220297965 23.880889764664854 2 15.01996579822204 20.867523680459527 40.968266958345566 23.144243562972868 3 18.187207880235935 26.478648639511587 30.024119710494347 25.310023769758132 4 12.892592604595041 17.912560478840103 38.1136651122295 31.081181804335355 5 13.773009276081932 37.54491893743948 34.91310235231137 13.76896943416721 6 30.281707254771064 37.381314181662574 18.525739845935387 13.81123871763098 7 26.923633994532427 32.37818357301544 22.974573970984544 17.72360846146759 8 25.176379582059155 35.78120971643285 20.782165046206313 18.26024565530168 9 26.237611090163583 16.520681404487057 20.817980462021023 36.423727043328334 10-11 24.79558697048998 26.28190512522273 28.32309220536231 20.599415698924986 12-13 25.747741312034467 23.99534032367588 28.330388138228063 21.92653022606159 14-15 22.93497827907359 25.015885260195862 25.985850102548092 26.06328635818246 16-17 22.40468654868677 28.152747564071092 26.57796014789736 22.86460573934478 18-19 22.536699190362068 27.290623197955888 28.350645017709514 21.822032593972533 20-21 23.30335543691945 26.411654008040504 28.264532757739286 22.020457797300757 22-23 23.275359134665603 26.34220947468923 28.036608074606555 22.34582331603861 24-25 22.940554885315485 26.570519777027744 28.113795708593326 22.375129629063444 26-27 22.777437107066962 26.60208306702012 28.119939992708538 22.50053983320438 28-29 22.776593016218758 26.53114239872209 28.197302263578305 22.494962321480845 30-31 22.893288225340164 26.550967129239964 28.041748371263157 22.51399627415671 32-33 22.776965052789375 26.721899092014866 27.950751195773233 22.55038465942253 34-35 23.002586144957395 26.62019355061379 27.937371400935607 22.439848903493207 36-37 23.164804086579736 26.57512346036671 27.66947751976387 22.590594933289687 38-39 22.84726485332055 26.70446386011807 27.909533229659594 22.53873805690178 40-41 23.00874497689923 26.529554627301223 27.84728119080751 22.61441920499204 42-43 22.83832029701916 26.702038250556225 27.60513526009512 22.854506192329495 44-45 22.85701157926262 26.77104259864406 27.485195848803627 22.886749973289696 46-47 23.10045813935274 26.737198813860296 27.166768912080002 22.99557413470696 48-49 23.037313541286583 26.919574601244072 27.00164059035667 23.041471267112676 50-51 23.00728494875627 27.01412809304744 26.91931140352684 23.05927555466945 52-53 23.23854788458114 26.92638480741029 26.81573404801898 23.019333259989587 54-55 23.183651428205735 26.83013088150878 26.832712393313894 23.15350529697159 56-57 23.13194962712225 26.998086560448005 26.8310158741219 23.03894793830785 58-59 23.05128414865378 27.015620900938043 26.840283728367975 23.0928112220402 60-61 23.155026472673907 27.110019301631866 26.719380955626548 23.01557327006768 62-63 23.18228435964065 27.120991274068235 26.767171647353543 22.929552718937572 64-65 23.166530458473545 26.98497360617289 26.699914983753466 23.1485809516001 66-67 23.19420366186346 26.98536445815838 26.613747848942065 23.206684031036097 68-69 23.06614371679524 27.008617242323762 26.69632923481921 23.228909806061786 70-71 23.11493291929454 26.905898477690805 26.71773054284396 23.261438060170693 72-73 23.19961047866203 26.96007157866597 26.535662487710066 23.304655454961928 74-75 23.051070963740653 27.119767705088694 26.571023556017686 23.25813777515297 76-77 23.27887560622296 26.97342094084721 26.556620350978054 23.191083101951776 78-79 23.1365428483828 26.931661227539415 26.513450801283167 23.418345122794623 80-81 23.23809789511295 27.04176470823729 26.437257731814313 23.282879664835445 82-83 23.268820518490525 26.998599759028295 26.574135148623196 23.158444573857977 84-85 23.173797558607465 27.076248854791185 26.49869739960774 23.25125618699361 86-87 23.19116910343168 27.04329665619869 26.621742929422066 23.143791310947567 88-89 23.21536638498474 26.96112098897568 26.59678905837339 23.22672356766619 90-91 23.220914165728455 27.062170494855042 26.54819643553931 23.168718903877192 92-93 23.279579257141744 27.074314712061426 26.56119584917586 23.08491018162097 94-95 23.071032214918404 26.973012578390748 26.708743818535858 23.247211388154994 96-97 23.243894018638343 27.07747992116109 26.68856819340671 22.990057866793855 98-99 24.401793518557085 29.003017883997106 26.77517229909888 19.820016298346925 100 23.29523447029383 29.907875491015094 20.71807752047389 26.078812518217187 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2503.0 1 2234.0 2 2838.0 3 3904.0 4 5009.0 5 8055.5 6 10845.5 7 12893.5 8 14356.5 9 14065.0 10 12430.5 11 10719.5 12 11345.5 13 15118.0 14 23968.0 15 36071.0 16 46595.0 17 53283.0 18 54326.0 19 50036.5 20 43409.0 21 37007.0 22 32713.0 23 32255.5 24 35577.5 25 43063.0 26 53712.0 27 65549.5 28 80159.0 29 97895.0 30 116182.0 31 134842.0 32 156247.5 33 177799.0 34 196661.0 35 213997.0 36 234375.0 37 254634.0 38 272000.5 39 287135.0 40 297823.5 41 307148.5 42 314148.0 43 322722.5 44 334516.5 45 347669.0 46 358797.0 47 367040.5 48 372712.5 49 375747.5 50 378396.5 51 377344.5 52 370971.0 53 357956.5 54 342067.5 55 324762.0 56 304334.0 57 280026.0 58 252976.5 59 221776.5 60 186751.0 61 153874.5 62 124532.5 63 98502.5 64 75286.0 65 56601.0 66 43405.5 67 33129.0 68 24397.5 69 17895.5 70 13228.5 71 9521.5 72 6496.5 73 4381.0 74 3052.0 75 2091.5 76 1339.5 77 795.0 78 519.5 79 369.5 80 256.5 81 166.0 82 111.5 83 70.5 84 48.0 85 40.0 86 35.0 87 26.5 88 15.0 89 6.5 90 3.0 91 3.0 92 2.5 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.0019441419923545537 4 0.013101356870700409 5 0.008586627132899278 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0018041598524521343 26-27 0.03561765206946285 28-29 0.08083175519340244 30-31 0.07795656957338482 32-33 0.03527998920962099 34-35 0.0014760387894311282 36-37 7.7715284879243525 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.1397401814090253E-5 56-57 2.292092852681462E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.011286652996669982 74-75 0.03324006174043865 76-77 0.0041282737718585484 78-79 0.0 80-81 0.0 82-83 0.0034077174956759853 84-85 0.03856794876128954 86-87 0.04138299781365932 88-89 0.01184900474524737 90-91 6.561314698499716E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 113.0 20-21 516.0 22-23 989.0 24-25 2365.0 26-27 3328.0 28-29 5660.0 30-31 11651.0 32-33 15305.0 34-35 24455.0 36-37 26275.0 38-39 32318.0 40-41 39233.0 42-43 49211.0 44-45 62150.0 46-47 60355.0 48-49 52551.0 50-51 44744.0 52-53 42083.0 54-55 46823.0 56-57 51311.0 58-59 53661.0 60-61 54701.0 62-63 56970.0 64-65 60026.0 66-67 64785.0 68-69 63921.0 70-71 64475.0 72-73 62350.0 74-75 64082.0 76-77 62557.0 78-79 68814.0 80-81 70291.0 82-83 69326.0 84-85 70469.0 86-87 75349.0 88-89 82692.0 90-91 89777.0 92-93 96387.0 94-95 119152.0 96-97 338569.0 98-99 593440.0 100-101 6405353.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.99661401710493 #Duplication Level Percentage of deduplicated Percentage of total 1 88.8259684281977 73.72254616330673 2 7.453937371688254 12.373031258913672 3 1.9996643607170146 4.978961133305727 4 0.7622107806705534 2.5304365585196056 5 0.3548906134474189 1.4727359631294508 6 0.1969091376761668 0.9805675017689873 7 0.11129156905628464 0.6465776380225705 8 0.07820023889478174 0.5192284034876476 9 0.050820511184498006 0.37961373158385703 >10 0.16208905821278216 2.09569969136948 >50 0.003186330277518455 0.18448816967580203 >100 7.8357425960742E-4 0.0926762928633461 >500 4.802571741414091E-5 0.023437494053100666 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.1601577692828374E-5 0.0 0.0 0.0 3 0.0 2.1601577692828374E-5 0.0 0.0 0.0 4 0.0 1.620118326962128E-4 0.0 0.0 0.0 5 0.0 1.72812621542627E-4 0.0 0.0 0.0 6 7.56055219248993E-5 1.72812621542627E-4 0.0 0.0 0.0 7 7.56055219248993E-5 1.72812621542627E-4 0.0 0.0 0.0 8 7.56055219248993E-5 2.0521498808186956E-4 0.0 0.0 0.0 9 7.56055219248993E-5 4.104299761637391E-4 0.0 0.0 0.0 10-11 8.10059163481064E-5 4.104299761637391E-4 0.0 1.0800788846414187E-5 0.0 12-13 8.64063107713135E-5 4.158303705869462E-4 0.0 1.0800788846414187E-5 0.0 14-15 9.720709961772767E-5 6.048441753991945E-4 0.0 1.0800788846414187E-5 0.0 16-17 1.620118326962128E-4 6.156449642456086E-4 0.0 1.0800788846414187E-5 0.0 18-19 1.620118326962128E-4 6.642485140544725E-4 0.0 1.620118326962128E-5 0.0 20-21 1.620118326962128E-4 7.128520638633363E-4 0.0 3.240236653924256E-5 0.0 22-23 1.620118326962128E-4 8.262603467506853E-4 0.0 4.860354980886384E-5 0.0 24-25 1.620118326962128E-4 8.802642909827563E-4 0.0 6.480473307848512E-5 0.0 26-27 1.620118326962128E-4 8.964654742523775E-4 1.0800788846414187E-5 7.560552192489931E-5 0.0 28-29 1.620118326962128E-4 8.964654742523775E-4 1.0800788846414187E-5 2.2681656577469792E-4 0.0 30-31 1.620118326962128E-4 9.82871785023691E-4 1.0800788846414187E-5 8.046587690578569E-4 0.0 32-33 1.620118326962128E-4 9.82871785023691E-4 1.0800788846414187E-5 0.002138556191590009 0.0 34-35 1.620118326962128E-4 0.0010692780957950046 1.0800788846414187E-5 0.004109700156060598 0.0 36-37 1.620118326962128E-4 0.0011826863786823533 1.0800788846414187E-5 0.0078089703359574564 0.0 38-39 1.620118326962128E-4 0.0012474911117608387 1.0800788846414187E-5 0.019252406118733287 0.0 40-41 1.620118326962128E-4 0.0013068954504161165 1.0800788846414187E-5 0.0305284296743897 0.0 42-43 1.72812621542627E-4 0.001328497028108945 1.0800788846414187E-5 0.03841300553227205 0.0 44-45 1.8361341038904117E-4 0.0014689072831123294 1.0800788846414187E-5 0.048468539948283665 0.0 46-47 1.9441419923545535E-4 0.0015877159604228855 1.0800788846414187E-5 0.05916132090623371 0.0 48-49 1.9441419923545535E-4 0.0015985167492692997 1.0800788846414187E-5 0.06960028332629302 0.0 50-51 2.4301774904431919E-4 0.0018361341038904116 1.0800788846414187E-5 0.08025526152328061 0.0 52-53 2.592189323139405E-4 0.00185773568158324 1.0800788846414187E-5 0.1062743618542924 0.0 54-55 2.6461932673714755E-4 0.0018847376536992755 1.0800788846414187E-5 0.13925457059681812 0.0 56-57 2.7001972116035466E-4 0.0019225404146617252 1.0800788846414187E-5 0.1732770554630228 0.0 58-59 2.7001972116035466E-4 0.0019279408090849322 1.0800788846414187E-5 0.19903153646729743 0.0 60-61 2.9702169327639014E-4 0.0019495423867777607 1.0800788846414187E-5 0.22053590706050807 0.0 62-63 3.5642603193166816E-4 0.001971143964470589 1.0800788846414187E-5 0.23766595817092098 0.0 64-65 3.5642603193166816E-4 0.0023437711796718786 1.0800788846414187E-5 0.24177025793255835 0.0 66-67 3.7262721520128946E-4 0.002376173546211121 1.0800788846414187E-5 0.24569634467822993 0.0 68-69 3.780276096244965E-4 0.002419376701596778 1.0800788846414187E-5 0.24996805666698674 0.0 70-71 3.834280040477036E-4 0.0024571794625592273 1.0800788846414187E-5 0.2540507548509313 0.0 72-73 4.212307650101533E-4 0.0024733806458288486 1.0800788846414187E-5 0.2574962064929374 0.0 74-75 4.212307650101533E-4 0.0025381853789073336 1.0800788846414187E-5 0.2601586009435785 0.0 76-77 4.266311594333604E-4 0.002673195239487511 1.0800788846414187E-5 0.2625239737009432 0.0 78-79 4.3203155385656747E-4 0.002721798789296375 1.0800788846414187E-5 0.2640954884780965 0.0 80-81 4.3203155385656747E-4 0.002721798789296375 1.0800788846414187E-5 0.26454912160964583 0.0 82-83 4.4283234270298165E-4 0.002737999972565996 1.0800788846414187E-5 0.2650459578965809 0.0 84-85 4.5363313154939583E-4 0.002775802733528446 1.0800788846414187E-5 0.2652403720958164 0.0 86-87 4.5363313154939583E-4 0.0028082051000676888 1.0800788846414187E-5 0.2653375791954341 0.0 88 4.860354980886384E-4 0.002959416143917487 1.0800788846414187E-5 0.26536458116755013 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12980 0.0 52.28819 1 GTATCAA 24020 0.0 39.252926 1 TCAACGC 29475 0.0 31.329735 4 ATCAACG 29780 0.0 30.995064 3 TATCAAC 30225 0.0 30.823868 2 CAACGCA 30025 0.0 30.723314 5 AACGCAG 30795 0.0 29.966995 6 ACGCAGA 35470 0.0 26.07803 7 CGCAGAG 36935 0.0 25.020334 8 GTACATG 31625 0.0 22.986998 1 GCAGAGT 41455 0.0 22.229914 9 TACATGG 33150 0.0 21.656548 2 ACATGGG 33735 0.0 20.948883 3 GAGTACT 22860 0.0 20.457733 12-13 CAGAGTA 40495 0.0 19.586475 10-11 CATGGGG 25970 0.0 19.380243 4 AGAGTAC 37395 0.0 19.234318 10-11 GTACTTT 25625 0.0 18.233925 14-15 GTGGTAT 6165 0.0 18.103579 1 AGTACTT 25655 0.0 17.129002 12-13 >>END_MODULE