##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138931_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7738510 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.81779980900716 33.0 33.0 33.0 33.0 33.0 2 32.85340769734742 33.0 33.0 33.0 33.0 33.0 3 33.51164423125382 33.0 33.0 33.0 33.0 37.0 4 36.67509223351782 37.0 37.0 37.0 37.0 37.0 5 36.67863270836376 37.0 37.0 37.0 37.0 37.0 6 36.623947504106084 37.0 37.0 37.0 37.0 37.0 7 36.66596269824553 37.0 37.0 37.0 37.0 37.0 8 36.662571735385754 37.0 37.0 37.0 37.0 37.0 9 36.669707605210824 37.0 37.0 37.0 37.0 37.0 10-11 36.64801105122304 37.0 37.0 37.0 37.0 37.0 12-13 36.86263124296538 37.0 37.0 37.0 37.0 38.5 14-15 38.76599377657973 40.0 37.0 40.0 37.0 40.0 16-17 38.71676976575594 40.0 37.0 40.0 37.0 40.0 18-19 38.74069071436232 40.0 37.0 40.0 37.0 40.0 20-21 38.74248775227845 40.0 37.0 40.0 37.0 40.0 22-23 38.64313082374376 40.0 37.0 40.0 37.0 40.0 24-25 38.75501457827778 40.0 37.0 40.0 37.0 40.0 26-27 38.54397651102436 40.0 37.0 40.0 37.0 40.0 28-29 38.556002273439745 40.0 37.0 40.0 37.0 40.0 30-31 38.53318919621202 40.0 37.0 40.0 37.0 40.0 32-33 38.49451063556115 40.0 37.0 40.0 37.0 40.0 34-35 37.820991334357046 40.0 37.0 40.0 35.0 40.0 36-37 34.03498741284524 40.0 37.0 40.0 8.5 40.0 38-39 37.48004011523176 40.0 37.0 40.0 33.0 40.0 40-41 37.95520691899914 40.0 37.0 40.0 35.0 40.0 42-43 38.13736127509871 40.0 37.0 40.0 37.0 40.0 44-45 38.12063639546474 40.0 37.0 40.0 37.0 40.0 46-47 38.01328943785657 40.0 37.0 40.0 33.0 40.0 48-49 37.97287851109134 40.0 37.0 40.0 33.0 40.0 50-51 37.9061891789016 40.0 37.0 40.0 33.0 40.0 52-53 37.81637459043585 40.0 37.0 40.0 33.0 40.0 54-55 37.714954306457386 40.0 37.0 40.0 33.0 40.0 56-57 37.60580979207218 40.0 37.0 40.0 33.0 40.0 58-59 37.44449336215935 38.5 37.0 40.0 33.0 40.0 60-61 37.226811193399996 37.0 37.0 40.0 33.0 40.0 62-63 36.989685110521776 37.0 37.0 40.0 33.0 40.0 64-65 36.76649885067016 37.0 37.0 40.0 33.0 40.0 66-67 36.48175244775339 37.0 37.0 40.0 33.0 40.0 68-69 36.20540220171131 37.0 37.0 38.5 33.0 40.0 70-71 35.94291653436654 37.0 37.0 37.0 33.0 40.0 72-73 35.68665886537369 37.0 35.0 37.0 33.0 40.0 74-75 35.19006108788832 37.0 33.0 37.0 33.0 38.5 76-77 33.77841504162333 35.0 33.0 37.0 27.0 37.0 78-79 35.094015930398044 37.0 33.0 37.0 33.0 37.0 80-81 35.14993759908232 37.0 33.0 37.0 33.0 37.0 82-83 35.218494461475984 37.0 33.0 37.0 33.0 37.0 84-85 35.097093831442244 37.0 33.0 37.0 33.0 37.0 86-87 35.035148836776784 37.0 33.0 37.0 33.0 37.0 88-89 34.958310827881704 37.0 33.0 37.0 33.0 37.0 90-91 34.847571055752354 37.0 33.0 37.0 33.0 37.0 92-93 34.83376690924581 37.0 33.0 37.0 33.0 37.0 94-95 34.793524854123376 37.0 33.0 37.0 33.0 37.0 96-97 34.760756733912146 37.0 33.0 37.0 33.0 37.0 98-99 34.72005522899633 37.0 33.0 37.0 33.0 37.0 100 34.642244885420865 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 3.0 19 9.0 20 49.0 21 217.0 22 837.0 23 2616.0 24 6187.0 25 12338.0 26 21871.0 27 35178.0 28 52052.0 29 73036.0 30 99993.0 31 133181.0 32 177271.0 33 239462.0 34 338240.0 35 535820.0 36 1076743.0 37 2517090.0 38 2334848.0 39 81467.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.32081275814956 0.0 23.529709740493267 30.149477501357175 2 15.35797418836772 23.375808253049158 37.704596877229534 23.56162068135359 3 16.965637540041552 24.735339378140583 32.271860734753716 26.027162347064152 4 13.632101630746154 22.199415547733047 36.571458924528734 27.597023896992063 5 17.81271279127487 36.385435729975605 31.459023306383376 14.34282817236615 6 28.627927081569965 36.36260727194253 20.185565438307894 14.82390020817961 7 26.80642656015176 32.5201492276937 22.13127591745698 18.542148294697558 8 25.045544943406416 31.396276544192613 21.65734747386771 21.90083103853326 9 24.558396900695353 20.141021979683426 23.148306327703914 32.15227479191731 10-11 25.555606024648547 25.23995738455836 27.96836393364898 21.236072657144117 12-13 25.763280011268318 23.450993795963306 27.940133178092424 22.845593014675952 14-15 23.180878695051028 25.60018179211384 25.8282489670653 25.39069054576983 16-17 22.483701642822716 27.896242299874263 26.64498075210861 22.975075305194412 18-19 22.612408590284176 27.14006313876961 28.31834552129544 21.92918274965077 20-21 23.336385252574853 26.370740343486293 28.10180530607498 22.19106909786387 22-23 23.41382030542634 26.05326157109267 27.86801475463098 22.66490336885001 24-25 22.989526868000247 26.394101059670955 28.096905216348922 22.51946685597988 26-27 22.870196720906456 26.62755096464149 27.87557421907919 22.626678095372867 28-29 22.90763464616553 26.381717484839474 27.933951425344674 22.776696443650323 30-31 22.990877350089995 26.346323842735377 28.03258179944992 22.630217007724706 32-33 22.83467718913981 26.72686552445411 27.792804424213802 22.645652862192282 34-35 23.101249077263457 26.28205752610778 27.799472105187228 22.817221291441534 36-37 23.108680196651445 26.532481146658505 27.758723110248734 22.600115546441316 38-39 22.921926145607767 26.724148002757236 27.777802797662606 22.576123053972395 40-41 23.195548743682135 26.377344959268235 27.54804512023607 22.879061176813558 42-43 22.86565418870446 26.52568836180873 27.68266102990212 22.92599641958469 44-45 22.97636982906716 26.79353246677845 27.331148992735255 22.89894871141913 46-47 23.20655312258645 26.444131504395614 27.16607079674761 23.18324457627033 48-49 22.9552729743686 26.87106498010847 27.07830760317983 23.095354442343098 50-51 23.019730085595473 27.13333557260167 26.715027682674314 23.131906659128546 52-53 23.224990523264204 26.627577098810317 26.698291759354316 23.449140618571164 54-55 23.06748916180238 26.50128570014304 27.104110850461034 23.327114287593545 56-57 22.995030881775907 26.738046957825752 26.97190094111606 23.29502121928228 58-59 23.04836387230659 26.402042975358864 27.017150318935517 23.53244283339903 60-61 23.055678090994856 26.59120874541219 27.24390460149591 23.10920856209705 62-63 22.775193228864154 27.02784582048122 27.035035827344974 23.161925123309647 64-65 22.87541213707996 26.91591479046036 26.74154565307324 23.467127419386443 66-67 22.731485706513016 27.25474873529586 26.69141385731931 23.322351700871813 68-69 22.76247917866023 27.308568017217212 26.586194147005628 23.34275865711693 70-71 22.875525584233905 26.708666807589676 26.50389776388505 23.91190984429137 72-73 22.941115478177924 26.623131844229103 26.507425013839775 23.928327663753205 74-75 22.914563650585322 26.830448937382677 26.63039579647376 23.624591615558234 76-77 23.401418044308752 26.43483077478288 26.10044610647969 24.063305074428676 78-79 23.20429737720819 26.616704770212042 26.120470573621944 24.058527278957826 80-81 23.271351513555736 26.972020658318414 25.99825984116454 23.75836798696131 82-83 23.266251022668616 26.57247500873286 26.12535857422737 24.035915394371155 84-85 23.222698344012475 26.944237393335367 26.192213442722267 23.640850819929888 86-87 23.48234514258732 26.933195914358315 26.18126591933748 23.40319302371688 88-89 23.39406775417448 26.67912836793327 26.39005930227571 23.536744575616535 90-91 23.30096666813897 26.63006848679813 26.38700714850342 23.68195769655948 92-93 23.303494157186627 26.51715901463978 26.477960432932825 23.70138639524077 94-95 23.074364860396475 26.41746544608991 26.859769163534285 23.64840052997933 96-97 23.045747014820062 26.61463235829093 26.95641778081753 23.383202846071473 98-99 24.330934799560552 28.720622067482914 26.53363606892872 20.41480706402782 100 23.4949530139137 28.73605483470364 20.850413761507788 26.91857838987487 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1304.0 1 1183.0 2 1888.0 3 2872.0 4 3896.0 5 6590.0 6 8922.5 7 10511.5 8 11596.5 9 11502.5 10 10307.5 11 8957.5 12 9476.5 13 11907.0 14 18216.0 15 28008.0 16 37225.0 17 43150.0 18 43831.5 19 39908.0 20 34172.5 21 28497.5 22 24692.5 23 24781.5 24 29141.5 25 36645.0 26 45225.0 27 55368.5 28 67437.0 29 82042.0 30 97586.5 31 111795.0 32 127249.0 33 141432.0 34 153036.0 35 163451.5 36 176762.5 37 191974.0 38 203585.5 39 212932.5 40 224679.5 41 237314.0 42 247816.5 43 258588.0 44 270835.0 45 285521.0 46 297690.5 47 306312.0 48 316676.5 49 322235.5 50 321179.0 51 321398.0 52 319348.0 53 310184.0 54 299027.5 55 285440.5 56 269425.5 57 249028.5 58 223020.0 59 194789.0 60 163461.5 61 134312.0 62 108055.5 63 82775.0 64 61110.5 65 45321.0 66 34120.5 67 25997.0 68 19842.0 69 14382.0 70 10476.0 71 7722.5 72 5399.5 73 3805.0 74 2620.0 75 1736.0 76 1102.0 77 683.0 78 442.0 79 301.5 80 215.0 81 156.5 82 124.5 83 89.5 84 60.0 85 44.0 86 32.5 87 23.5 88 15.5 89 10.5 90 8.0 91 6.5 92 4.5 93 3.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 2.7137006994886614E-4 2 7.882654412800397E-4 3 0.0038508705164172433 4 0.013038685741828855 5 0.007585439574284973 6 0.0 7 0.0 8 0.0 9 0.0 10-11 6.46119214163967E-6 12-13 0.0 14-15 6.46119214163967E-6 16-17 0.0 18-19 0.0 20-21 1.9384098694009273E-5 22-23 1.9385382568586453E-4 24-25 0.005008776021884021 26-27 0.041970131773413265 28-29 0.08542388920971714 30-31 0.08013933019675983 32-33 0.09528741168446249 34-35 1.3350859405931335 36-37 5.7709418066131635 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 1.34900135453226E-5 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 2.101573090505436E-5 70-71 7.413229734506827E-4 72-73 0.01375426165088425 74-75 0.0309080084442687 76-77 0.0035205517449177362 78-79 3.644759571976931E-5 80-81 2.794837317668123E-4 82-83 0.007073375096182687 84-85 0.04024322730906005 86-87 0.03997626385695683 88-89 0.009746301106736445 90-91 7.735386655622597E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 132.0 20-21 406.0 22-23 826.0 24-25 2340.0 26-27 2901.0 28-29 5155.0 30-31 9785.0 32-33 12867.0 34-35 20011.0 36-37 20273.0 38-39 20432.0 40-41 31963.0 42-43 38529.0 44-45 48460.0 46-47 47395.0 48-49 40973.0 50-51 20916.0 52-53 8863.0 54-55 8885.0 56-57 10695.0 58-59 32032.0 60-61 47891.0 62-63 47467.0 64-65 51175.0 66-67 56800.0 68-69 55343.0 70-71 55653.0 72-73 54188.0 74-75 56033.0 76-77 55955.0 78-79 60463.0 80-81 61570.0 82-83 62003.0 84-85 63384.0 86-87 67665.0 88-89 75216.0 90-91 80067.0 92-93 87031.0 94-95 116003.0 96-97 414196.0 98-99 1440707.0 100-101 4345861.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.95891274209085 #Duplication Level Percentage of deduplicated Percentage of total 1 87.6063539003921 70.92515161074573 2 8.062391080440676 13.054448319480166 3 2.2510404664263435 5.467253661009774 4 0.9147746362844721 2.962366398305299 5 0.43509774370960386 1.7612520133633216 6 0.23394559549346386 1.1363988631171096 7 0.13829434220628015 0.7837311708382162 8 0.08943340281991666 0.5792344844100715 9 0.055349741091193005 0.4032949373369294 >10 0.2081325085227011 2.6194993209278365 >50 0.004737809751930621 0.2514344121415426 >100 4.4877286129078604E-4 0.055934808323973476 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1630145854951406E-4 0.0 0.0 0.0 3 0.0 1.1630145854951406E-4 0.0 0.0 0.0 4 0.0 1.1630145854951406E-4 0.0 0.0 0.0 5 0.0 1.292238428327934E-4 0.0 0.0 0.0 6 0.0 1.4214622711607272E-4 0.0 0.0 0.0 7 0.0 1.4214622711607272E-4 0.0 0.0 0.0 8 0.0 1.8091337996591075E-4 0.0 0.0 1.2922384283279339E-5 9 0.0 3.230596070819835E-4 0.0 0.0 1.2922384283279339E-5 10-11 0.0 3.295207992236232E-4 0.0 1.2922384283279339E-5 1.2922384283279339E-5 12-13 0.0 3.3598199136526284E-4 0.0 3.230596070819835E-5 1.2922384283279339E-5 14-15 0.0 4.7812821848133554E-4 0.0 5.815072927475703E-5 1.9383576424919007E-5 16-17 0.0 5.298177556144529E-4 0.0 1.0337907426623472E-4 2.5844768566558678E-5 18-19 0.0 5.298177556144529E-4 0.0 2.1968053281574875E-4 2.5844768566558678E-5 20-21 0.0 5.298177556144529E-4 0.0 3.4890437564854214E-4 2.5844768566558678E-5 22-23 0.0 5.815072927475703E-4 0.0 5.556625241810116E-4 2.5844768566558678E-5 24-25 0.0 6.525804063056066E-4 0.0 8.399549784131571E-4 2.5844768566558678E-5 26-27 0.0 6.978087512970843E-4 0.0 0.0017186771096761523 2.5844768566558678E-5 28-29 0.0 7.23653519863643E-4 0.0 0.004193313699924145 2.5844768566558678E-5 30-31 0.0 8.141102098465984E-4 0.0 0.005763383390342585 2.5844768566558678E-5 32-33 0.0 8.141102098465984E-4 0.0 0.008567540779814201 2.5844768566558678E-5 34-35 0.0 9.174892841128332E-4 0.0 0.012373182951239969 2.5844768566558678E-5 36-37 0.0 0.0010273295505207076 0.0 0.023899949731925135 2.5844768566558678E-5 38-39 1.2922384283279339E-5 0.0010596355112289057 0.0 0.10259080882495468 2.5844768566558678E-5 40-41 1.2922384283279339E-5 0.00117593696977842 0.0 0.1637201476770076 2.5844768566558678E-5 42-43 1.2922384283279339E-5 0.0013956175025941686 0.0 0.184118131268164 2.5844768566558678E-5 44-45 1.2922384283279339E-5 0.0016152980354099174 0.0 0.20967860738049054 2.5844768566558678E-5 46-47 1.2922384283279339E-5 0.0016152980354099174 0.0 0.23806908565085527 3.230596070819835E-5 48-49 1.2922384283279339E-5 0.0016282204196931967 0.0 0.2679133321530889 3.8767152849838015E-5 50-51 1.2922384283279339E-5 0.0019125128739253421 0.0 0.3208692629459676 3.8767152849838015E-5 52-53 1.2922384283279339E-5 0.0019125128739253421 0.0 0.6281506388180671 5.815072927475702E-5 54-55 1.2922384283279339E-5 0.0019318964503502612 0.0 1.0273230893285659 7.753430569967603E-5 56-57 1.2922384283279339E-5 0.002015891948191577 0.0 1.4664386296586809 7.753430569967603E-5 58-59 1.2922384283279339E-5 0.002028814332474856 0.0 1.9038354928791201 7.753430569967603E-5 60-61 1.2922384283279339E-5 0.0020611202931830547 0.0 2.011653406146661 7.753430569967603E-5 62-63 1.2922384283279339E-5 0.002112809830316172 0.0 2.0166672912485737 7.753430569967603E-5 64-65 1.2922384283279339E-5 0.002364796323840119 0.0 2.0208670661406396 7.753430569967603E-5 66-67 1.2922384283279339E-5 0.0024294082452565157 0.0 2.0245951740063655 7.753430569967603E-5 68-69 1.2922384283279339E-5 0.0024940201666729125 0.0 2.0285881907498986 7.753430569967603E-5 70-71 1.2922384283279339E-5 0.0025457097038060297 0.0 2.0321806135806506 7.753430569967603E-5 72-73 1.2922384283279339E-5 0.002558632088089309 0.0 2.035378903690762 9.045668998295538E-5 74-75 1.2922384283279339E-5 0.002629705201647346 0.0 2.038111987966676 9.045668998295538E-5 76-77 1.2922384283279339E-5 0.002726623083771941 0.0 2.040857994626873 9.045668998295538E-5 78-79 1.2922384283279339E-5 0.0027653902366217785 0.0 2.0424797538544244 9.045668998295538E-5 80-81 1.2922384283279339E-5 0.0027653902366217785 0.0 2.0429191149200556 1.0984026640787438E-4 82-83 1.2922384283279339E-5 0.0027653902366217785 0.0 2.043377859562112 1.292238428327934E-4 84-85 1.2922384283279339E-5 0.0027653902366217785 0.0 2.0435329281735113 1.292238428327934E-4 86-87 1.2922384283279339E-5 0.0028170797737548958 0.0 2.0436492296320607 1.4214622711607272E-4 88 1.2922384283279339E-5 0.002972148385154248 0.0 2.0436492296320607 1.4214622711607272E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10300 0.0 50.391674 1 GTATCAA 19130 0.0 39.20068 1 ATCAACG 22500 0.0 32.403057 3 ATCTCGT 5790 0.0 32.01602 94 TCAACGC 23000 0.0 31.640606 4 CAACGCA 23510 0.0 30.932173 5 TATCAAC 23920 0.0 30.879 2 AACGCAG 23785 0.0 30.626692 6 ACGCAGA 24990 0.0 29.20198 7 CGCAGAG 28735 0.0 25.411219 8 GTACATG 25120 0.0 24.031027 1 TACATGG 25970 0.0 22.810013 2 ACATGGG 25225 0.0 22.743616 3 GCAGAGT 33095 0.0 22.011057 9 TATCTCG 6510 0.0 21.71225 94 GAGTACT 17485 0.0 21.141048 12-13 CTATCTC 10100 0.0 19.959692 94 CATGGGG 21755 0.0 19.867346 4 AGAGTAC 29135 0.0 19.46315 10-11 CAGAGTA 32045 0.0 19.279789 10-11 >>END_MODULE