##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138930_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9976481 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.7178745691993 33.0 33.0 33.0 33.0 33.0 2 32.712925730024445 33.0 33.0 33.0 33.0 33.0 3 32.713279762673835 33.0 33.0 33.0 33.0 33.0 4 36.64213393480126 37.0 37.0 37.0 37.0 37.0 5 36.65795374140441 37.0 37.0 37.0 37.0 37.0 6 36.58038009594766 37.0 37.0 37.0 37.0 37.0 7 36.6307405386729 37.0 37.0 37.0 37.0 37.0 8 36.63629720740209 37.0 37.0 37.0 37.0 37.0 9 36.64457547706451 37.0 37.0 37.0 37.0 37.0 10-11 36.60502616102812 37.0 37.0 37.0 37.0 37.0 12-13 36.57838209685359 37.0 37.0 37.0 37.0 37.0 14-15 38.69620024335234 40.0 37.0 40.0 37.0 40.0 16-17 38.646568865314336 40.0 37.0 40.0 37.0 40.0 18-19 38.675067691704115 40.0 37.0 40.0 37.0 40.0 20-21 38.69850218912058 40.0 37.0 40.0 37.0 40.0 22-23 38.54928127863769 40.0 37.0 40.0 37.0 40.0 24-25 38.70291246245067 40.0 37.0 40.0 37.0 40.0 26-27 38.495742447515546 40.0 37.0 40.0 37.0 40.0 28-29 38.484806030362776 40.0 37.0 40.0 37.0 40.0 30-31 38.468833239846006 40.0 37.0 40.0 37.0 40.0 32-33 38.46405244824558 40.0 37.0 40.0 37.0 40.0 34-35 38.37532682504667 40.0 37.0 40.0 37.0 40.0 36-37 33.34688999898399 40.0 37.0 40.0 8.5 40.0 38-39 37.30583737519578 40.0 37.0 40.0 33.0 40.0 40-41 37.88082518093513 40.0 37.0 40.0 35.0 40.0 42-43 38.09571827452304 40.0 37.0 40.0 35.0 40.0 44-45 38.106673601318434 40.0 37.0 40.0 37.0 40.0 46-47 38.007531019601785 40.0 37.0 40.0 33.0 40.0 48-49 37.989497271553255 40.0 37.0 40.0 33.0 40.0 50-51 37.93839291109906 40.0 37.0 40.0 33.0 40.0 52-53 37.86909281025818 40.0 37.0 40.0 33.0 40.0 54-55 37.78430628237831 40.0 37.0 40.0 33.0 40.0 56-57 37.70193663016124 40.0 37.0 40.0 33.0 40.0 58-59 37.558533455141244 40.0 37.0 40.0 33.0 40.0 60-61 37.364642233831646 38.5 37.0 40.0 33.0 40.0 62-63 37.14262249501738 37.0 37.0 40.0 33.0 40.0 64-65 36.935705257113945 37.0 37.0 40.0 33.0 40.0 66-67 36.665766556674576 37.0 37.0 40.0 33.0 40.0 68-69 36.39088269767903 37.0 37.0 40.0 33.0 40.0 70-71 36.12509111139261 37.0 37.0 38.5 33.0 40.0 72-73 35.867048457262214 37.0 37.0 37.0 33.0 40.0 74-75 35.58471628140772 37.0 35.0 37.0 33.0 40.0 76-77 33.73533891396741 35.0 33.0 37.0 27.0 37.0 78-79 35.20039816487531 37.0 33.0 37.0 33.0 37.0 80-81 35.229455769384856 37.0 33.0 37.0 33.0 37.0 82-83 35.30630017969257 37.0 33.0 37.0 33.0 37.0 84-85 35.156025042164714 37.0 33.0 37.0 33.0 37.0 86-87 35.086389560003184 37.0 33.0 37.0 33.0 37.0 88-89 35.00200903250453 37.0 33.0 37.0 33.0 37.0 90-91 34.869305842404245 37.0 33.0 37.0 33.0 37.0 92-93 34.856974358923694 37.0 33.0 37.0 33.0 37.0 94-95 34.81942639294221 37.0 33.0 37.0 33.0 37.0 96-97 34.79669200646175 37.0 33.0 37.0 33.0 37.0 98-99 34.754480677789985 37.0 33.0 37.0 33.0 37.0 100 34.70390772637254 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 9.0 20 46.0 21 285.0 22 1088.0 23 3293.0 24 7741.0 25 16037.0 26 28492.0 27 45619.0 28 67395.0 29 94921.0 30 128849.0 31 172388.0 32 229844.0 33 311620.0 34 440309.0 35 686497.0 36 1337231.0 37 3129967.0 38 3167610.0 39 107237.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.25305305548119 20.417610177376172 14.380170723524657 23.949166043617986 2 14.364213193008638 21.198476697344486 41.90494624306908 22.532363866577803 3 17.62178309583601 26.83715232556123 30.85299062590495 24.688073952697803 4 12.251018112849902 18.474621689485378 39.45356590372822 29.820794293936498 5 13.150260551814691 37.87370712759054 35.74158601036794 13.234446310226824 6 29.12490887317883 38.5032858780566 19.162638609746264 13.209166639018308 7 25.796991945356286 32.97376098846878 23.738380296619617 17.490866769555318 8 24.109593352605994 36.614493627562666 21.60861129289977 17.66730172693157 9 25.59444557655149 16.803199444774165 21.410625650467335 36.19172932820701 10-11 23.898120990758166 26.80659142236626 29.294512764570996 20.000774822304578 12-13 24.91124876597269 24.44476664667632 29.151501416180714 21.492483171170278 14-15 22.07400084258167 25.642583792822336 26.893300353100457 25.390115011495535 16-17 21.59106502583426 28.792938111143602 27.455908551321855 22.16008831170029 18-19 21.66701364940203 27.935782166076393 29.147817752572276 21.2493864319493 20-21 22.526665777890937 27.144789585686834 28.987978472916232 21.340566163506 22-23 22.267512731063796 27.17342315249208 28.758671157624605 21.80039295881952 24-25 22.028814774339413 27.303031366395796 28.868348364004593 21.7998054952602 26-27 21.977356435669886 27.41591403894668 28.74301276511389 21.863716760269543 28-29 21.876556434924552 27.4408363939873 28.819938152296853 21.86266901879129 30-31 22.264777448455927 27.352119988619183 28.66273798685176 21.72036457607313 32-33 22.090075494766182 27.44041296970398 28.678265507118045 21.79124602841179 34-35 22.160237244525156 27.48459313490467 28.647763371280632 21.707406249289537 36-37 22.30537074851318 27.38335169401231 28.44244431065952 21.868833246814994 38-39 21.9621922011987 27.486491682197922 28.6881294665316 21.86318665007178 40-41 22.259180586234635 27.349286907099895 28.51935231648014 21.872180190185325 42-43 22.116621991620143 27.43785939186093 28.388980045693373 22.056538570825552 44-45 22.148625732857457 27.610100270565297 28.17140787758423 22.069866118993016 46-47 22.322905200766773 27.508370068932553 27.844199205270026 22.32452552503065 48-49 22.261872377465135 27.586421805649692 27.866652406262123 22.285053410623046 50-51 22.19259749254986 27.78305378875421 27.735572333405567 22.288776385290358 52-53 22.3798521601028 27.706045607193495 27.64798084400008 22.26612138870362 54-55 22.393595213019335 27.595697393763768 27.61544801263612 22.395259380580782 56-57 22.37620973631354 27.707780106354267 27.564949693642742 22.351060463689446 58-59 22.275681293365206 27.81879211021174 27.679887769417167 22.22563882700589 60-61 22.40466559914114 27.821883719193032 27.552570674167416 22.220880007498415 62-63 22.35640073728932 27.92938484130689 27.459734321911167 22.254480099492618 64-65 22.304641821281184 27.85657708419007 27.473051348242223 22.365729746286522 66-67 22.419790750659356 27.847692489506347 27.29294543458455 22.439571325249748 68-69 22.350085878279614 27.820667132803006 27.4222839591224 22.406963029794976 70-71 22.363479803239557 27.56791367207661 27.448439018333232 22.6201675063506 72-73 22.425603946256103 27.590583523922792 27.39778951708982 22.586023012731285 74-75 22.352630138584452 27.77799092162011 27.322017233308443 22.547361706487 76-77 22.46286674478505 27.707151367456056 27.261638938309616 22.568342949449274 78-79 22.410545827932797 27.718889820591418 27.19518808388819 22.67537626758759 80-81 22.53751783582029 27.710531852115466 27.17106835549801 22.58088195656623 82-83 22.498397540597395 27.714518056383085 27.294413265021944 22.492671137997572 84-85 22.625723484206887 27.673559425220628 27.216155322894505 22.48456176767798 86-87 22.440016277267926 27.666741860567406 27.331502386423423 22.561739475741245 88-89 22.46479270165207 27.721088773193443 27.27777278424564 22.536345740908846 90-91 22.491962051854443 27.776909425186936 27.29810210917995 22.43302641377867 92-93 22.589536042386424 27.724667568370176 27.27527838029123 22.410518008952174 94-95 22.367876444490584 27.777092490277106 27.376170286027108 22.478860779205203 96-97 22.509946981869888 27.877306046676047 27.41828640206086 22.1944605693932 98-99 23.63510452323057 29.758451650889604 27.583609197241916 19.02283462863791 100 22.55467362913346 30.762034391390742 21.434432108843293 25.248859870632508 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2060.0 1 1808.5 2 2539.0 3 3754.5 4 5170.5 5 8490.5 6 11159.0 7 12775.0 8 13655.0 9 13175.5 10 11900.0 11 10838.0 12 11982.0 13 16188.5 14 25510.0 15 37824.5 16 48533.5 17 55885.5 18 57898.0 19 55042.5 20 50177.0 21 45400.0 22 43080.0 23 45610.5 24 53073.0 25 66159.0 26 84237.5 27 104396.0 28 125115.5 29 147568.5 30 167953.0 31 187607.0 32 210481.0 33 232229.0 34 255014.5 35 277212.5 36 298847.5 37 318086.5 38 330372.5 39 341830.5 40 356222.5 41 366878.0 42 372056.0 43 379756.5 44 387867.5 45 394698.5 46 398771.5 47 400218.5 48 404449.0 49 403495.0 50 394633.0 51 384071.0 52 371337.5 53 352604.0 54 329940.0 55 305418.0 56 279379.0 57 251790.0 58 223797.0 59 194730.5 60 162723.0 61 132324.0 62 105032.5 63 80372.0 64 59085.5 65 43440.0 66 32717.0 67 25096.5 68 19178.5 69 13990.5 70 9955.0 71 7200.0 72 5146.0 73 3451.5 74 2300.5 75 1513.5 76 1018.5 77 648.0 78 405.0 79 275.5 80 183.5 81 127.0 82 92.0 83 63.0 84 47.5 85 40.0 86 30.5 87 23.0 88 14.5 89 7.5 90 5.0 91 3.0 92 2.5 93 1.0 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.001583724762268379 4 0.014113192818189098 5 0.009241735638047123 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0016592783663035957 26-27 0.03562667139482656 28-29 0.08350073194198222 30-31 0.0808184271637482 32-33 0.036322903064019446 34-35 0.0014064129000425554 36-37 7.398847994917297 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.070204105046098E-5 56-57 3.2325532769227647E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.011476913684749719 74-75 0.03444198101501841 76-77 0.004548048375079481 78-79 0.0 80-81 0.0 82-83 0.003480279190646021 84-85 0.03932248835964975 86-87 0.04326077293031282 88-89 0.012462964884727505 90-91 1.883930537220376E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 122.0 20-21 544.0 22-23 1058.0 24-25 2423.0 26-27 3950.0 28-29 6685.0 30-31 15576.0 32-33 20814.0 34-35 32309.0 36-37 37957.0 38-39 45281.0 40-41 53486.0 42-43 63286.0 44-45 76537.0 46-47 76170.0 48-49 67559.0 50-51 58380.0 52-53 55431.0 54-55 61484.0 56-57 67225.0 58-59 68754.0 60-61 70763.0 62-63 71568.0 64-65 75158.0 66-67 81077.0 68-69 77335.0 70-71 75836.0 72-73 73778.0 74-75 75765.0 76-77 74164.0 78-79 80729.0 80-81 81475.0 82-83 79575.0 84-85 80814.0 86-87 85111.0 88-89 91809.0 90-91 98273.0 92-93 104620.0 94-95 127214.0 96-97 349320.0 98-99 622079.0 100-101 6684987.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.2748033939596 #Duplication Level Percentage of deduplicated Percentage of total 1 90.16913167601798 76.8915497587649 2 6.8457430009707 11.67538776986703 3 1.6409520123114505 4.197955806863439 4 0.6018412236278426 2.0528756807697746 5 0.28278567380086095 1.2057246367998404 6 0.14150843412902722 0.7240262339363929 7 0.08382626892441249 0.5003788021244922 8 0.05744748961259107 0.39190587057521925 9 0.040560923235684596 0.3112942278960443 >10 0.13235969335320152 1.752083386251102 >50 0.0032430056824897776 0.18381759878148704 >100 5.207552025428268E-4 0.058923525885200785 >500 5.9883124486273465E-5 0.03506440477473265 >1k 1.996000673402621E-5 0.019012296710345794 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.004714888947315E-5 0.0 0.0 0.0 3 0.0 2.004714888947315E-5 0.0 0.0 0.0 4 0.0 5.011787222368288E-5 0.0 1.0023574444736576E-5 0.0 5 0.0 6.0141446668419454E-5 0.0 1.0023574444736576E-5 0.0 6 7.016502111315603E-5 6.0141446668419454E-5 0.0 1.0023574444736576E-5 1.0023574444736576E-5 7 7.016502111315603E-5 6.0141446668419454E-5 0.0 1.0023574444736576E-5 1.0023574444736576E-5 8 7.016502111315603E-5 6.0141446668419454E-5 0.0 1.0023574444736576E-5 1.0023574444736576E-5 9 7.016502111315603E-5 1.1025931889210233E-4 0.0 1.0023574444736576E-5 2.004714888947315E-5 10-11 7.016502111315603E-5 1.1025931889210233E-4 0.0 1.5035361667104864E-5 2.004714888947315E-5 12-13 7.016502111315603E-5 1.1025931889210233E-4 0.0 2.004714888947315E-5 2.004714888947315E-5 14-15 7.016502111315603E-5 1.5536540389341692E-4 0.0 2.004714888947315E-5 2.505893611184144E-5 16-17 8.01885955578926E-5 1.603771911157852E-4 0.0 4.00942977789463E-5 3.0070723334209727E-5 18-19 8.01885955578926E-5 1.653889783381535E-4 0.0 5.512965944605117E-5 4.00942977789463E-5 20-21 8.01885955578926E-5 1.704007655605218E-4 0.0 7.016502111315603E-5 4.00942977789463E-5 22-23 8.52003827802609E-5 2.104950633394681E-4 0.0 9.522395722499747E-5 6.0141446668419454E-5 24-25 9.021217000262918E-5 2.556011483407827E-4 0.0 1.5035361667104863E-4 9.021217000262918E-5 26-27 9.021217000262918E-5 2.906836588973607E-4 0.0 2.3054221222894124E-4 1.0023574444736576E-4 28-29 9.021217000262918E-5 2.906836588973607E-4 0.0 5.813673177947214E-4 1.0023574444736576E-4 30-31 9.021217000262918E-5 3.1073080778683384E-4 0.0 0.0022051863778420468 1.0023574444736576E-4 32-33 9.021217000262918E-5 3.1073080778683384E-4 0.0 0.005728472795166953 1.1025931889210233E-4 34-35 1.0023574444736576E-4 3.708722544552533E-4 0.0 0.01059491818808656 1.1025931889210233E-4 36-37 1.0023574444736576E-4 4.4103727556840937E-4 0.0 0.01964119412446132 1.1025931889210233E-4 38-39 1.0023574444736576E-4 4.610844244578825E-4 0.0 0.0424498377734594 1.202828933368389E-4 40-41 1.1025931889210233E-4 5.412730200157751E-4 0.0 0.0658849548252535 1.3030646778157547E-4 42-43 1.1025931889210233E-4 5.663319561276165E-4 0.0 0.08142650700181758 1.4033004222631205E-4 44-45 1.1527110611447062E-4 6.214616155736677E-4 0.0 0.10205502320908544 1.5035361667104863E-4 46-47 1.2028289333683891E-4 6.61555913352614E-4 0.0 0.1221322428218928 1.5536540389341692E-4 48-49 1.2028289333683891E-4 6.665677005749823E-4 0.0 0.14105675137355547 1.603771911157852E-4 50-51 1.5536540389341692E-4 7.617916577999798E-4 0.0 0.15815696937627605 1.603771911157852E-4 52-53 1.603771911157852E-4 7.617916577999798E-4 0.0 0.20067697217084862 1.8042434000525837E-4 54-55 1.603771911157852E-4 7.617916577999798E-4 0.0 0.2527694885601446 2.0047148889473153E-4 56-57 1.603771911157852E-4 8.018859555789261E-4 0.0 0.3069970263061695 2.0047148889473153E-4 58-59 1.603771911157852E-4 8.16921317246031E-4 0.0 0.3406662128660396 2.0047148889473153E-4 60-61 1.704007655605218E-4 8.369684661355041E-4 0.0 0.36536931208509293 2.0047148889473153E-4 62-63 1.9044791444999495E-4 8.52003827802609E-4 0.0 0.3837174651061832 2.0047148889473153E-4 64-65 1.9044791444999495E-4 9.321924233605016E-4 0.0 0.3900924584530357 2.0548327611709982E-4 66-67 1.9044791444999495E-4 9.422159978052381E-4 0.0 0.39552523580208293 2.104950633394681E-4 68-69 1.9044791444999495E-4 9.622631466947113E-4 0.0 0.4014842508094788 2.1550685056183637E-4 70-71 1.9545970167236324E-4 9.823102955841844E-4 0.0 0.40629055475573 2.505893611184144E-4 72-73 2.3054221222894124E-4 9.92333870028921E-4 0.0 0.4103200316825141 2.906836588973607E-4 74-75 2.3054221222894124E-4 0.0010424517422526038 0.0 0.4134173161859377 2.906836588973607E-4 76-77 2.4056578667367784E-4 0.0011126167633657598 0.0 0.41656471856158495 2.9569544611972895E-4 78-79 2.505893611184144E-4 0.001132663912255233 0.0 0.41852933915275337 3.0070723334209726E-4 80-81 2.505893611184144E-4 0.0011376756994776014 0.0 0.41916583612999414 3.057190205644656E-4 82-83 2.505893611184144E-4 0.0011627346355894427 0.0 0.4195667791077836 3.1073080778683384E-4 84-85 2.6562472278551926E-4 0.001167746422811811 0.0 0.4197772741711231 3.1073080778683384E-4 86-87 2.806600844526241E-4 0.001182781784478916 0.0 0.4199476749366836 3.1073080778683384E-4 88 2.906836588973607E-4 0.0012629703800368086 0.0 0.41996772208557304 3.207543822315704E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11750 0.0 53.256046 1 GTATCAA 22300 0.0 38.26142 1 TCAACGC 26985 0.0 30.750147 4 ATCAACG 27345 0.0 30.361197 3 CAACGCA 27735 0.0 29.882952 5 TATCAAC 28560 0.0 29.308214 2 AACGCAG 28555 0.0 29.066648 6 ACGCAGA 32560 0.0 25.491343 7 CGCAGAG 33525 0.0 24.732182 8 GCAGAGT 39020 0.0 21.20561 9 GTACATG 28420 0.0 21.028997 1 TACATGG 28165 0.0 20.962278 2 ACATGGG 28520 0.0 20.088972 3 GAGTACT 23785 0.0 19.71285 12-13 GTGGTAT 5900 0.0 18.988417 1 AGAGTAC 35065 0.0 18.842703 10-11 CAGAGTA 38015 0.0 18.8312 10-11 CATGGGG 21470 0.0 18.11421 4 GTACTTT 26375 0.0 17.777601 14-15 TGGTATC 5595 0.0 17.739477 2 >>END_MODULE