##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138929_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11027806 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.719259207135124 33.0 33.0 33.0 33.0 33.0 2 32.712092958472425 33.0 33.0 33.0 33.0 33.0 3 32.71204852533677 33.0 33.0 33.0 33.0 33.0 4 36.63973377841431 37.0 37.0 37.0 37.0 37.0 5 36.65718403098495 37.0 37.0 37.0 37.0 37.0 6 36.58379672257564 37.0 37.0 37.0 37.0 37.0 7 36.63076744367828 37.0 37.0 37.0 37.0 37.0 8 36.63478138806577 37.0 37.0 37.0 37.0 37.0 9 36.64334800594062 37.0 37.0 37.0 37.0 37.0 10-11 36.60300457770113 37.0 37.0 37.0 37.0 37.0 12-13 36.57618038438471 37.0 37.0 37.0 37.0 37.0 14-15 38.689020009963905 40.0 37.0 40.0 37.0 40.0 16-17 38.63864371571281 40.0 37.0 40.0 37.0 40.0 18-19 38.663824381749194 40.0 37.0 40.0 37.0 40.0 20-21 38.68746116467864 40.0 37.0 40.0 37.0 40.0 22-23 38.545725303221296 40.0 37.0 40.0 37.0 40.0 24-25 38.69577047628141 40.0 37.0 40.0 37.0 40.0 26-27 38.48912091547392 40.0 37.0 40.0 37.0 40.0 28-29 38.47881913240378 40.0 37.0 40.0 37.0 40.0 30-31 38.46280885406517 40.0 37.0 40.0 37.0 40.0 32-33 38.45772118234964 40.0 37.0 40.0 37.0 40.0 34-35 38.368627484264756 40.0 37.0 40.0 37.0 40.0 36-37 33.425322276314944 40.0 37.0 40.0 8.5 40.0 38-39 37.31807166224456 40.0 37.0 40.0 33.0 40.0 40-41 37.876878428241604 40.0 37.0 40.0 35.0 40.0 42-43 38.08469864854209 40.0 37.0 40.0 35.0 40.0 44-45 38.091694569368585 40.0 37.0 40.0 35.0 40.0 46-47 37.98744750765246 40.0 37.0 40.0 33.0 40.0 48-49 37.96419674034961 40.0 37.0 40.0 33.0 40.0 50-51 37.91793484176236 40.0 37.0 40.0 33.0 40.0 52-53 37.84390384337604 40.0 37.0 40.0 33.0 40.0 54-55 37.75818011511659 40.0 37.0 40.0 33.0 40.0 56-57 37.67746032954906 40.0 37.0 40.0 33.0 40.0 58-59 37.53202159835746 40.0 37.0 40.0 33.0 40.0 60-61 37.33626449880053 37.0 37.0 40.0 33.0 40.0 62-63 37.11288438179452 37.0 37.0 40.0 33.0 40.0 64-65 36.901694663960306 37.0 37.0 40.0 33.0 40.0 66-67 36.63154510778004 37.0 37.0 40.0 33.0 40.0 68-69 36.35326673961272 37.0 37.0 40.0 33.0 40.0 70-71 36.08598912870391 37.0 37.0 38.5 33.0 40.0 72-73 35.82852382566384 37.0 37.0 37.0 33.0 40.0 74-75 35.545159382858984 37.0 33.0 37.0 33.0 40.0 76-77 33.698206063547204 35.0 33.0 37.0 27.0 37.0 78-79 35.17233558870147 37.0 33.0 37.0 33.0 37.0 80-81 35.20545109649136 37.0 33.0 37.0 33.0 37.0 82-83 35.28177193747089 37.0 33.0 37.0 33.0 37.0 84-85 35.13008868537565 37.0 33.0 37.0 33.0 37.0 86-87 35.063081629936676 37.0 33.0 37.0 33.0 37.0 88-89 34.9781713638605 37.0 33.0 37.0 33.0 37.0 90-91 34.84337401582498 37.0 33.0 37.0 33.0 37.0 92-93 34.82764469810556 37.0 33.0 37.0 33.0 37.0 94-95 34.7890343729794 37.0 33.0 37.0 33.0 37.0 96-97 34.76702014324445 37.0 33.0 37.0 33.0 37.0 98-99 34.72561008699759 37.0 33.0 37.0 33.0 37.0 100 34.67140966821296 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 10.0 20 62.0 21 316.0 22 1253.0 23 3653.0 24 8712.0 25 17737.0 26 31246.0 27 50378.0 28 74212.0 29 105407.0 30 143012.0 31 192053.0 32 256861.0 33 349580.0 34 492968.0 35 769422.0 36 1498923.0 37 3452009.0 38 3463579.0 39 116411.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.79815096493355 20.05783380665202 14.20559991715487 23.938415311259558 2 14.538322491345967 21.05642772460814 41.77695907962109 22.628290704424796 3 18.00880810071044 26.44658263973878 30.515373460133034 25.029235799417748 4 12.396270358217565 18.21482533515444 39.133840486257355 30.255063820370644 5 13.331239034632288 37.76430469797026 35.518541163761405 13.385915103636044 6 29.588813949030296 38.04479331609569 18.999790166783857 13.366602568090153 7 26.14412150522053 32.83887112268751 23.387707400728665 17.629299971363295 8 24.28897461562164 36.536333700465896 21.264964218630613 17.90972746528185 9 25.688618388825486 16.829820909072936 21.28426996267435 36.197290739427224 10-11 24.14307070690217 26.659042605573585 29.04098059033683 20.15690609718742 12-13 25.112873766549754 24.32600827399394 28.96472788875684 21.596390070699467 14-15 22.2430146123354 25.528582022570944 26.757366787192304 25.47103657790135 16-17 21.798778469624875 28.66731152143953 27.26966723934026 22.26424276959533 18-19 21.822727022945454 27.85401738115451 28.984124312669262 21.33913128323077 20-21 22.665738792681967 26.989919935048825 28.84777176258741 21.496569509681805 22-23 22.43421687177502 26.931671214343233 28.658579083432727 21.975532830449016 24-25 22.170071236326695 27.08710263862823 28.737253868928114 22.005572256116963 26-27 22.09897572195989 27.16977835146062 28.704207491644386 22.027038434935108 28-29 22.036682925251323 27.25303852925194 28.729504712951147 21.980773832545587 30-31 22.279726676839264 27.085451550842176 28.62962699877952 22.00519477353903 32-33 22.11311902167884 27.216488385314324 28.597275531351173 22.073117061655662 34-35 22.305040996890614 27.332220223447322 28.50779860654243 21.854940173119633 36-37 22.43947299216222 27.265926046376265 28.279578199311516 22.015022762150004 38-39 22.12035624539458 27.405589288068242 28.49310259389769 21.980951872639487 40-41 22.424109125222024 27.257146425399643 28.322713143872114 21.996031305506218 42-43 22.23606578490767 27.344405557149447 28.16750325171468 22.2520254062282 44-45 22.307356266642994 27.455472334752752 27.999249555190854 22.2379218434134 46-47 22.469997999323088 27.41423639720484 27.724523284254126 22.391242319217948 48-49 22.369013919829705 27.53912407562086 27.693532096338064 22.39832990821137 50-51 22.357493397809698 27.683737747933368 27.59942301830991 22.35934583594702 52-53 22.500871784419544 27.615227683043337 27.493660847364797 22.39023968517232 54-55 22.496495227959162 27.474384614913504 27.54842690393381 22.48069325319352 56-57 22.488439640639037 27.60497273251492 27.43563175559609 22.470955871249952 58-59 22.440820295993927 27.662649086387788 27.53597120351187 22.360559414106408 60-61 22.562278623347463 27.651651624793143 27.47422981359207 22.311839938267326 62-63 22.503423896968485 27.750937754264026 27.41425038033843 22.331387968429055 64-65 22.425228174834924 27.749628039839962 27.370738010632596 22.45440577469252 66-67 22.53902577999913 27.70625062778202 27.24705765499207 22.507665937226783 68-69 22.43599410383738 27.6691002007853 27.34758605439897 22.54731964097835 70-71 22.482105149572583 27.45070728683715 27.356683013776458 22.71050454981381 72-73 22.515169628443083 27.494091037200818 27.285352604153502 22.705386730202598 74-75 22.39754374613484 27.615824127148997 27.291855364405066 22.6947767623111 76-77 22.537059056783825 27.54388616197171 27.218814497950806 22.700240283293656 78-79 22.446749739448677 27.576060892652855 27.197909159350242 22.77928020854823 80-81 22.62559751740423 27.549226390280353 27.110535811125917 22.714640281189496 82-83 22.53707226826146 27.541227813429675 27.29395376368982 22.627746154619043 84-85 22.619524103896648 27.587939421378543 27.180865114242525 22.611671360482283 86-87 22.487291260498925 27.613340707368337 27.252297351205346 22.647070680927392 88-89 22.483758440000237 27.57673590417655 27.236776196239166 22.702729459584045 90-91 22.493739290742344 27.601543874005934 27.24348671753366 22.66123011771806 92-93 22.559186094053278 27.554172844318455 27.305304403521767 22.581336658106505 94-95 22.421730580470587 27.634042922830464 27.339699631021556 22.604526865677393 96-97 22.459883341033667 27.696740965780357 27.436056556274497 22.40731913691148 98-99 23.635477595444762 29.631509213239145 27.559716396398727 19.17329679491737 100 22.511488812462375 30.687131500505828 21.376858516243104 25.424521170788694 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3153.0 1 2663.0 2 3112.5 3 4279.5 4 5639.5 5 8853.0 6 11563.5 7 13508.0 8 15075.0 9 15222.5 10 14110.0 11 12961.5 12 13969.5 13 18140.0 14 27515.0 15 40165.5 16 51396.0 17 59145.5 18 61546.5 19 58761.0 20 53757.5 21 48801.5 22 46141.5 23 48620.0 24 56567.0 25 69746.5 26 88063.5 27 108499.5 28 130337.0 29 154348.0 30 177549.0 31 200612.5 32 224061.5 33 247273.0 34 270339.0 35 291517.0 36 315081.0 37 337612.5 38 355184.0 39 371477.5 40 388826.0 41 403909.0 42 412935.5 43 421062.0 44 429685.0 45 439557.5 46 451064.5 47 460425.5 48 463091.0 49 456408.0 50 446427.5 51 432728.5 52 412979.0 53 390999.5 54 368281.5 55 343745.0 56 318459.5 57 290749.0 58 259448.5 59 225606.0 60 188634.0 61 153515.5 62 122576.0 63 95799.0 64 73387.0 65 57012.5 66 44946.5 67 34159.0 68 25245.5 69 18743.0 70 13462.0 71 9094.0 72 6163.0 73 4148.5 74 2803.0 75 1892.0 76 1222.0 77 759.0 78 502.5 79 365.0 80 263.5 81 181.0 82 139.5 83 103.0 84 69.0 85 48.5 86 35.0 87 26.5 88 21.0 89 15.0 90 8.5 91 3.0 92 3.0 93 4.5 94 4.5 95 3.5 96 3.0 97 3.0 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 0.0 3 0.002085636979830802 4 0.014019107699210522 5 0.009466978291058076 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0014876302861388823 26-27 0.036694970066922045 28-29 0.08445102859437201 30-31 0.0820343724656768 32-33 0.03746957673854443 34-35 0.0012959596222788783 36-37 7.271631163638885 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 4.374583533571794E-5 56-57 7.342003031561998E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.011416527894400563 74-75 0.03452065425250223 76-77 0.004684866505472556 78-79 0.0 80-81 0.0 82-83 0.003238053208148995 84-85 0.0404605446297998 86-87 0.04445497020982668 88-89 0.012379150024274607 90-91 2.2756900660325607E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 240.0 20-21 940.0 22-23 1475.0 24-25 3434.0 26-27 5383.0 28-29 7990.0 30-31 19203.0 32-33 24345.0 34-35 37738.0 36-37 46864.0 38-39 55567.0 40-41 61887.0 42-43 72918.0 44-45 88404.0 46-47 87104.0 48-49 77668.0 50-51 68408.0 52-53 64492.0 54-55 69752.0 56-57 74504.0 58-59 77228.0 60-61 76243.0 62-63 76296.0 64-65 81449.0 66-67 86035.0 68-69 84459.0 70-71 83921.0 72-73 79721.0 74-75 81265.0 76-77 80194.0 78-79 86807.0 80-81 87560.0 82-83 86177.0 84-85 86476.0 86-87 91403.0 88-89 99576.0 90-91 105613.0 92-93 112617.0 94-95 137280.0 96-97 387259.0 98-99 689947.0 100-101 7381964.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.4331331372709 #Duplication Level Percentage of deduplicated Percentage of total 1 90.62950554408971 78.33392118857337 2 6.58773659493267 11.387974283661743 3 1.5888092285169644 4.119772787343944 4 0.553709973642247 1.9143555148502043 5 0.2580824636470674 1.1153437970400926 6 0.12279269838435829 0.6368014588643994 7 0.08146235447819476 0.4928732571202555 8 0.04820375935313901 0.33331215599094655 9 0.031243614097542276 0.2430435111284147 >10 0.0963298472278467 1.2413888302407539 >50 0.001678344379163309 0.09229517170473735 >100 4.1322525959125553E-4 0.0631224236018485 >500 1.61762857478779E-5 0.010108747841724039 >1k 1.617570585084392E-5 0.015686872037575537 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.067986868829575E-6 2 0.0 2.7203960606488726E-5 0.0 0.0 9.067986868829575E-6 3 0.0 2.7203960606488726E-5 0.0 0.0 9.067986868829575E-6 4 0.0 9.974785555712533E-5 0.0 1.813597373765915E-5 9.067986868829575E-6 5 0.0 9.974785555712533E-5 0.0 2.7203960606488726E-5 9.067986868829575E-6 6 0.0 9.974785555712533E-5 0.0 2.7203960606488726E-5 9.067986868829575E-6 7 0.0 9.974785555712533E-5 0.0 2.7203960606488726E-5 9.067986868829575E-6 8 0.0 1.088158424259549E-4 0.0 3.62719474753183E-5 9.067986868829575E-6 9 0.0 1.6322376363893235E-4 0.0 6.347590808180703E-5 9.067986868829575E-6 10-11 0.0 1.6322376363893235E-4 0.0 1.3601980303244363E-4 9.067986868829575E-6 12-13 0.0 1.6322376363893235E-4 0.0 1.6775775707334714E-4 9.067986868829575E-6 14-15 0.0 2.4483564545839853E-4 0.0 2.4483564545839853E-4 2.2669967172073938E-5 16-17 0.0 2.4483564545839853E-4 0.0 3.1284554697462035E-4 3.173795404090351E-5 18-19 0.0 2.493696388928133E-4 0.0 3.7632145505642737E-4 3.62719474753183E-5 20-21 0.0 2.6750561263047247E-4 0.0 4.715353171791379E-4 3.62719474753183E-5 22-23 0.0 3.0377756010579077E-4 0.0 5.803511596050928E-4 4.080594090973309E-5 24-25 0.0 3.309815207122795E-4 0.0 6.755650217278033E-4 4.5339934344147876E-5 26-27 0.0 3.4911749444993865E-4 0.0 7.617108969816843E-4 5.440792121297745E-5 28-29 0.0 3.581854813187682E-4 0.0 9.974785555712533E-4 5.440792121297745E-5 30-31 0.0 4.352633697038196E-4 0.0 0.0016911795510367157 5.894191464739224E-5 32-33 0.0 4.352633697038196E-4 0.0 0.0037541465636954444 7.25438949506366E-5 34-35 0.0 5.032732712200415E-4 0.0 0.006302250873836554 9.067986868829575E-5 36-37 9.067986868829575E-6 5.712831727362632E-4 0.0 0.01055967070875204 9.974785555712533E-5 38-39 9.067986868829575E-6 5.712831727362632E-4 0.0 0.022783317007934307 9.974785555712533E-5 40-41 9.067986868829575E-6 6.347590808180703E-4 0.0 0.03530167288035353 9.974785555712533E-5 42-43 9.067986868829575E-6 6.528950545557294E-4 0.0 0.04332684125926771 9.974785555712533E-5 44-45 9.067986868829575E-6 7.617108969816843E-4 0.0 0.05399079381701129 9.974785555712533E-5 46-47 9.067986868829575E-6 8.387887853667357E-4 0.0 0.06535751535708915 9.974785555712533E-5 48-49 9.067986868829575E-6 8.433227788011505E-4 0.0 0.07651567319918395 1.088158424259549E-4 50-51 9.067986868829575E-6 9.340026474894462E-4 0.0 0.08754687922511513 1.088158424259549E-4 52-53 9.067986868829575E-6 9.476046277926906E-4 0.0 0.11514983125383235 1.1788382929478448E-4 54-55 9.067986868829575E-6 9.566726146615202E-4 0.0 0.14845201302960898 1.2695181616361405E-4 56-57 9.067986868829575E-6 9.793425818335941E-4 0.0 0.1839985215554209 1.3601980303244363E-4 58-59 9.067986868829575E-6 9.793425818335941E-4 0.0 0.2151470564498505 1.450877899012732E-4 60-61 9.067986868829575E-6 9.884105687024236E-4 0.0 0.22815054961975212 1.5415577677010278E-4 62-63 9.067986868829575E-6 0.0010156145293089124 0.0 0.24513942301850433 1.7229175050776193E-4 64-65 9.067986868829575E-6 0.0012241782272919925 0.0 0.25166837356406163 1.7229175050776193E-4 66-67 9.067986868829575E-6 0.0012332462141608222 0.0 0.25690513598081066 1.7229175050776193E-4 68-69 9.067986868829575E-6 0.001260450174767311 0.0 0.26235046209554286 1.7229175050776193E-4 70-71 9.067986868829575E-6 0.0012695181616361405 0.0 0.2671973010769323 1.7229175050776193E-4 72-73 9.067986868829575E-6 0.0012695181616361405 0.0 0.27137310903002826 1.858937308110063E-4 74-75 9.067986868829575E-6 0.0012921881288082144 0.0 0.274365544696742 1.9042772424542108E-4 76-77 9.067986868829575E-6 0.001364732023758851 0.0 0.2773534463700214 1.9042772424542108E-4 78-79 9.067986868829575E-6 0.001405537964668584 0.0 0.27903102394075485 1.9042772424542108E-4 80-81 9.067986868829575E-6 0.001405537964668584 0.0 0.27967485100844175 1.9496171767983587E-4 82-83 9.067986868829575E-6 0.0014146059515374137 0.0 0.28018719226653066 1.9949571111425065E-4 84-85 9.067986868829575E-6 0.0014327419252750729 0.0 0.2804093579448169 1.9949571111425065E-4 86-87 9.067986868829575E-6 0.0014599458858815615 0.0 0.280486435833202 2.0402970454866544E-4 88 9.067986868829575E-6 0.001532489780832198 0.0 0.28050003781350524 2.0856369798308023E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16225 0.0 42.39637 1 GTATCAA 27695 0.0 35.704247 1 TCAACGC 32865 0.0 29.568987 4 ATCAACG 33250 0.0 29.201534 3 CAACGCA 33575 0.0 28.913624 5 AACGCAG 34335 0.0 28.282043 6 TATCAAC 34515 0.0 28.254604 2 ACGCAGA 38760 0.0 25.097164 7 CGCAGAG 39580 0.0 24.54496 8 GTACATG 32270 0.0 21.408764 1 GCAGAGT 45860 0.0 20.970392 9 TACATGG 32410 0.0 20.68586 2 GAGTACT 25485 0.0 20.278933 12-13 ACATGGG 32880 0.0 20.001781 3 AGAGTAC 38835 0.0 19.126202 10-11 CAGAGTA 43860 0.0 18.623087 10-11 GTACTTT 28185 0.0 18.261597 14-15 CATGGGG 25400 0.0 17.830849 4 AGTACTT 28925 0.0 16.256277 12-13 ACTTTTT 33165 0.0 15.50159 16-17 >>END_MODULE